SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    279401 4v1o:B (9.7) BS01 rna 2.7.7.6 GO:0000428 ... P08518 25652824
    279402 4v1o:B (9.7) BS02 dna 2.7.7.6 GO:0000428 ... P08518 25652824
    279403 4v1o:B (9.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 25652824
    279404 4v1o:C (9.7) BS01 ZN ? GO:0000428 ... P16370 25652824
    279405 4v1o:I (9.7) BS01 ZN ? GO:0000428 ... P27999 25652824
    279406 4v1o:I (9.7) BS02 ZN ? GO:0000428 ... P27999 25652824
    279407 4v1o:J (9.7) BS01 ZN ? GO:0000428 ... P22139 25652824
    279408 4v1o:L (9.7) BS01 ZN ? GO:0000428 ... P40422 25652824
    279409 4v1o:M (9.7) BS01 dna ? GO:0000993 ... P29055 25652824
    279410 4v1o:M (9.7) BS02 dna ? GO:0000993 ... P29055 25652824
    279411 4v1o:M (9.7) BS03 ZN ? GO:0000993 ... P29055 25652824
    279412 4v1o:O (9.7) BS01 dna ? GO:0003677 ... P13393 25652824
    279413 4v1o:O (9.7) BS02 dna ? GO:0003677 ... P13393 25652824
    279414 4v1t:A (2.14) BS01 peptide ? GO:0000166 ... A0YXD2 26098679
    279415 4v1t:A (2.14) BS02 ZN ? GO:0000166 ... A0YXD2 26098679
    279416 4v1t:A (2.14) BS03 ADP ? GO:0000166 ... A0YXD2 26098679
    279417 4v1t:B (2.14) BS01 peptide ? GO:0000166 ... A0YXD2 26098679
    279418 4v1t:B (2.14) BS02 ZN ? GO:0000166 ... A0YXD2 26098679
    279419 4v1t:B (2.14) BS03 ADP ? GO:0000166 ... A0YXD2 26098679
    279420 4v1u:A (2.86) BS01 peptide ? GO:0000166 ... A0YXD2 26098679
    279421 4v1u:A (2.86) BS02 ZN ? GO:0000166 ... A0YXD2 26098679
    279422 4v1u:A (2.86) BS03 AMP ? GO:0000166 ... A0YXD2 26098679
    279423 4v1u:A (2.86) BS04 CA ? GO:0000166 ... A0YXD2 26098679
    279424 4v1u:B (2.86) BS01 peptide ? GO:0000166 ... A0YXD2 26098679
    279425 4v1u:B (2.86) BS02 ZN ? GO:0000166 ... A0YXD2 26098679
    279426 4v1u:B (2.86) BS03 AMP ? GO:0000166 ... A0YXD2 26098679
    279427 4v1u:B (2.86) BS04 CA ? GO:0000166 ... A0YXD2 26098679
    279428 4v1u:B (2.86) BS05 CA ? GO:0000166 ... A0YXD2 26098679
    279429 4v1v:A (3.01) BS01 peptide ? GO:0000166 ... A0YXD2 26098679
    279430 4v1v:A (3.01) BS02 ANP ? GO:0000166 ... A0YXD2 26098679
    279431 4v1v:A (3.01) BS03 MG ? GO:0000166 ... A0YXD2 26098679
    279432 4v1v:B (3.01) BS01 peptide ? GO:0000166 ... A0YXD2 26098679
    279433 4v1v:B (3.01) BS02 ZN ? GO:0000166 ... A0YXD2 26098679
    279434 4v1v:B (3.01) BS03 ANP ? GO:0000166 ... A0YXD2 26098679
    279435 4v1v:B (3.01) BS04 MG ? GO:0000166 ... A0YXD2 26098679
    279436 4v1x:A (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279437 4v1x:B (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279438 4v1x:C (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279439 4v1x:D (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279440 4v1x:E (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279441 4v1x:F (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279442 4v1y:A (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279443 4v1y:B (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279444 4v1y:C (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279445 4v1y:D (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279446 4v1y:E (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279447 4v1y:F (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279448 4v1y:G (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279449 4v1y:H (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279450 4v1y:I (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279451 4v1y:J (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279452 4v1y:K (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279453 4v1y:L (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    279454 4v1z:A (1.78) BS01 ZN 3.2.1.91 GO:0004553 ... Q4WM08 25615982
    279455 4v20:A (1.5) BS01 SHG 3.2.1.91 GO:0004553 ... Q4WM08 25615982
    279456 4v20:A (1.5) BS02 BGC 3.2.1.91 GO:0004553 ... Q4WM08 25615982
    279457 4v20:A (1.5) BS03 ZN 3.2.1.91 GO:0004553 ... Q4WM08 25615982
    279458 4v24:A (1.8) BS01 GYR 2.3.1.-
    2.7.1.91
    GO:0000287 ... Q9NYA1 25516793 MOAD: Ki=4.3nM
    BindingDB: Ki=3.6nM, IC50=28nM, Kd=5.0nM
    279459 4v24:B (1.8) BS01 GYR 2.3.1.-
    2.7.1.91
    GO:0000287 ... Q9NYA1 25516793 MOAD: Ki=4.3nM
    BindingDB: Ki=3.6nM, IC50=28nM, Kd=5.0nM
    279460 4v25:A (2.6) BS01 TF3 2.7.11.2 GO:0004672 ... Q15119 25404640 BindingDB: IC50=2000nM
    279461 4v25:A (2.6) BS02 SZ6 2.7.11.2 GO:0004672 ... Q15119 25404640 BindingDB: IC50=80nM
    279462 4v26:A (2.49) BS01 TF3 2.7.11.2 GO:0004672 ... Q15119 25404640 BindingDB: IC50=2000nM
    279463 4v26:A (2.49) BS02 7TJ 2.7.11.2 GO:0004672 ... Q15119 25404640
    279464 4v27:A (1.9) BS01 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    279465 4v27:A (1.9) BS02 IFM 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    279466 4v28:A (1.2) BS01 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    279467 4v28:A (1.2) BS02 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    279468 4v28:A (1.2) BS03 4MU 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    279469 4v29:A (1.6) BS01 CA ? GO:0005096 ... Q9LVH4 25465408
    279470 4v29:A (1.6) BS02 CA ? GO:0005096 ... Q9LVH4 25465408
    279471 4v29:B (1.6) BS01 CA ? GO:0005096 ... Q9LVH4 25465408
    279472 4v29:B (1.6) BS02 CA ? GO:0005096 ... Q9LVH4 25465408
    279473 4v2g:A (2.71) BS01 ITC ? GO:0000976 ... P0ACT4 25432019
    279474 4v2g:B (2.71) BS01 CTC ? GO:0000976 ... P0ACT4 25432019
    279475 4v2i:A (1.686) BS01 MG 3.1.1.1 GO:0016787 ... A0A023T3X2 27016194
    279476 4v2i:B (1.686) BS01 MG 3.1.1.1 GO:0016787 ... A0A023T3X2 27016194
    279477 4v2k:A (1.29) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673696
    279478 4v2k:A (1.29) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673696
    279479 4v2k:A (1.29) BS03 THJ 1.8.2.2 GO:0009055 ... D3RVD4 25673696
    279480 4v2o:B (2.13) BS01 CLQ ? GO:0005764 ... P07602 26616259 MOAD: Ka=31400M^-1
    279481 4v2o:C (2.13) BS01 CLQ ? GO:0005764 ... P07602 26616259 MOAD: Ka=31400M^-1
    279482 4v2s:A (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    279483 4v2s:B (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    279484 4v2s:C (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    279485 4v2s:D (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    279486 4v2s:E (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    279487 4v2s:F (3.48) BS01 rna ? GO:0000049 ... P0A6X3 25551292
    279488 4v2v:A (2.0) BS01 peptide 1.14.11.66
    1.14.11.69
    N/A O75164 25625844
    279489 4v2v:A (2.0) BS02 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 25625844
    279490 4v2v:B (2.0) BS01 peptide 1.14.11.66
    1.14.11.69
    N/A O75164 25625844
    279491 4v2v:B (2.0) BS02 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 25625844
    279492 4v2w:A (1.81) BS01 peptide 1.14.11.66
    1.14.11.69
    N/A O75164 25625844
    279493 4v2w:A (1.81) BS02 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 25625844
    279494 4v2w:B (1.81) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 25625844
    279495 4v2x:A (1.64) BS01 CA ? GO:0000272 ... Q9KF82 25713075
    279496 4v2y:A (1.4) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279497 4v2y:A (1.4) BS02 EF2 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=4400nM, IC50=7800nM
    279498 4v2y:B (1.4) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279499 4v2y:B (1.4) BS02 EF2 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=4400nM, IC50=7800nM
    279500 4v2y:C (1.4) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279501 4v2y:C (1.4) BS02 EF2 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=4400nM, IC50=7800nM
    279502 4v2z:A (1.45) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279503 4v2z:A (1.45) BS02 Y70 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=800nM
    279504 4v2z:B (1.45) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279505 4v2z:B (1.45) BS02 Y70 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=800nM
    279506 4v2z:C (1.45) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279507 4v2z:C (1.45) BS02 Y70 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=800nM
    279508 4v30:A (1.85) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279509 4v30:A (1.85) BS02 LVY ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=3100nM
    279510 4v30:B (1.85) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279511 4v30:B (1.85) BS02 LVY ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=3100nM
    279512 4v30:C (1.85) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279513 4v30:C (1.85) BS02 LVY ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=3100nM
    279514 4v31:A (1.8) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279515 4v31:A (1.8) BS02 DUR ? GO:0046872 ... A4TVL0 25448889
    279516 4v31:B (1.8) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279517 4v31:B (1.8) BS02 DUR ? GO:0046872 ... A4TVL0 25448889
    279518 4v31:C (1.8) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279519 4v31:C (1.8) BS02 DUR ? GO:0046872 ... A4TVL0 25448889
    279520 4v32:A (1.9) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279521 4v32:A (1.9) BS02 EF2 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=4400nM, IC50=7800nM
    279522 4v32:B (1.9) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279523 4v32:B (1.9) BS02 EF2 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=4400nM, IC50=7800nM
    279524 4v32:C (1.9) BS01 ZN ? GO:0046872 ... A4TVL0 25448889
    279525 4v32:C (1.9) BS02 EF2 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=4400nM, IC50=7800nM
    279526 4v33:A (1.48) BS01 ZN ? GO:0003674 ... A0A6L8P8I1 25825488
    279527 4v33:B (1.48) BS01 ZN ? GO:0003674 ... A0A6L8P8I1 25825488
    279528 4v35:A (2.3) BS01 GOL 2.3.2.3 N/A Q9I537 26261323
    279529 4v35:A (2.3) BS02 GOL 2.3.2.3 N/A Q9I537 26261323
    279530 4v35:A (2.3) BS03 CA 2.3.2.3 N/A Q9I537 26261323
    279531 4v36:A (2.1) BS01 LYN 2.3.2.3 N/A Q65MA9 26261323
    279532 4v37:A (2.1) BS01 NAD 1.2.1.-
    1.2.1.19
    1.2.1.47
    1.2.1.8
    GO:0008802 ... P17202 N/A
    279533 4v37:A (2.1) BS02 0D8 1.2.1.-
    1.2.1.19
    1.2.1.47
    1.2.1.8
    GO:0008802 ... P17202 N/A
    279534 4v37:B (2.1) BS01 NAD 1.2.1.-
    1.2.1.19
    1.2.1.47
    1.2.1.8
    GO:0008802 ... P17202 N/A
    279535 4v37:B (2.1) BS02 0D8 1.2.1.-
    1.2.1.19
    1.2.1.47
    1.2.1.8
    GO:0008802 ... P17202 N/A
    279536 4v37:C (2.1) BS01 NAD 1.2.1.-
    1.2.1.19
    1.2.1.47
    1.2.1.8
    GO:0008802 ... P17202 N/A
    279537 4v37:C (2.1) BS02 0D8 1.2.1.-
    1.2.1.19
    1.2.1.47
    1.2.1.8
    GO:0008802 ... P17202 N/A
    279538 4v37:C (2.1) BS03 0D8 1.2.1.-
    1.2.1.19
    1.2.1.47
    1.2.1.8
    GO:0008802 ... P17202 N/A
    279539 4v37:D (2.1) BS01 NAD 1.2.1.-
    1.2.1.19
    1.2.1.47
    1.2.1.8
    GO:0008802 ... P17202 N/A
    279540 4v37:D (2.1) BS02 0D8 1.2.1.-
    1.2.1.19
    1.2.1.47
    1.2.1.8
    GO:0008802 ... P17202 N/A
    279541 4v3b:A (2.18) BS01 C ? GO:0016757 ... K9UUI6 25619424
    279542 4v3c:A (1.84) BS01 C ? GO:0016757 ... K9UUI6 25619424
    279543 4v3g:A (2.513) BS01 C8E ? GO:0098657 ... Q48391 26015567
    279544 4v3g:A (2.513) BS02 C8E ? GO:0098657 ... Q48391 26015567
    279545 4v3g:A (2.513) BS03 C8E ? GO:0098657 ... Q48391 26015567
    279546 4v3g:A (2.513) BS04 C8E ? GO:0098657 ... Q48391 26015567
    279547 4v3g:A (2.513) BS05 C8E ? GO:0098657 ... Q48391 26015567
    279548 4v3g:B (2.513) BS01 C8E ? GO:0098657 ... Q48391 26015567
    279549 4v3g:B (2.513) BS02 C8E ? GO:0098657 ... Q48391 26015567
    279550 4v3g:B (2.513) BS03 C8E ? GO:0098657 ... Q48391 26015567
    279551 4v3h:A (1.83) BS01 C8E ? GO:0098657 ... Q48391 26015567
    279552 4v3h:A (1.83) BS02 C8E ? GO:0098657 ... Q48391 26015567
    279553 4v3h:A (1.83) BS03 C8E ? GO:0098657 ... Q48391 26015567
    279554 4v3h:A (1.83) BS04 C8E ? GO:0098657 ... Q48391 26015567
    279555 4v3h:B (1.83) BS01 C8E ? GO:0098657 ... Q48391 26015567
    279556 4v3h:B (1.83) BS02 C8E ? GO:0098657 ... Q48391 26015567
    279557 4v3h:B (1.83) BS03 C8E ? GO:0098657 ... Q48391 26015567
    279558 4v3h:B (1.83) BS04 C8E ? GO:0098657 ... Q48391 26015567
    279559 4v3h:B (1.83) BS05 C8E ? GO:0098657 ... Q48391 26015567
    279560 4v3i:A (1.499) BS01 peptide ? GO:0003674 ... Q9KN50 25471186
    279561 4v3k:C (2.04) BS01 ZN 2.3.2.27 N/A Q9H0F5 25801170
    279562 4v3k:C (2.04) BS02 ZN 2.3.2.27 N/A Q9H0F5 25801170
    279563 4v3k:F (2.04) BS01 ZN 2.3.2.27 N/A Q9H0F5 25801170
    279564 4v3k:F (2.04) BS02 ZN 2.3.2.27 N/A Q9H0F5 25801170
    279565 4v3l:C (1.53) BS01 ZN 2.3.2.27 N/A Q9H0F5 25801170
    279566 4v3l:C (1.53) BS02 ZN 2.3.2.27 N/A Q9H0F5 25801170
    279567 4v3o:A (2.0) BS01 CA N/A N/A N/A 26894544
    279568 4v3o:A (2.0) BS02 CA N/A N/A N/A 26894544
    279569 4v3o:A (2.0) BS03 CA N/A N/A N/A 26894544
    279570 4v3o:A (2.0) BS04 CA N/A N/A N/A 26894544
    279571 4v3o:A (2.0) BS05 CA N/A N/A N/A 26894544
    279572 4v3o:B (2.0) BS01 CA N/A N/A N/A 26894544
    279573 4v3o:B (2.0) BS02 CA N/A N/A N/A 26894544
    279574 4v3o:B (2.0) BS03 CA N/A N/A N/A 26894544
    279575 4v3o:B (2.0) BS04 CA N/A N/A N/A 26894544
    279576 4v3o:B (2.0) BS05 CA N/A N/A N/A 26894544
    279577 4v3o:C (2.0) BS01 CA N/A N/A N/A 26894544
    279578 4v3o:C (2.0) BS02 CA N/A N/A N/A 26894544
    279579 4v3o:C (2.0) BS03 CA N/A N/A N/A 26894544
    279580 4v3o:C (2.0) BS04 CA N/A N/A N/A 26894544
    279581 4v3o:C (2.0) BS05 CA N/A N/A N/A 26894544
    279582 4v3o:D (2.0) BS01 CA N/A N/A N/A 26894544
    279583 4v3o:D (2.0) BS02 CA N/A N/A N/A 26894544
    279584 4v3o:D (2.0) BS03 CA N/A N/A N/A 26894544
    279585 4v3o:D (2.0) BS04 CA N/A N/A N/A 26894544
    279586 4v3o:D (2.0) BS05 CA N/A N/A N/A 26894544
    279587 4v3p:LA (34.0) BS01 rna ? GO:0003723 ... Q5I7L3 25376914
    279588 4v3p:LB (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    279589 4v3p:LB (34.0) BS02 rna N/A GO:0003723 ... N/A 25376914
    279590 4v3p:LB (34.0) BS03 peptide N/A GO:0003723 ... N/A 25376914
    279591 4v3p:LC (34.0) BS01 rna ? GO:0003723 ... Q7X744 25376914
    279592 4v3p:LD (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    279593 4v3p:LD (34.0) BS02 rna N/A GO:0003735 ... N/A 25376914
    279594 4v3p:LE (34.0) BS01 rna ? GO:0003723 ... Q5I7L2 25376914
    279595 4v3p:LE (34.0) BS02 rna ? GO:0003723 ... Q5I7L2 25376914
    279596 4v3p:LF (34.0) BS01 rna N/A GO:0003735 ... N/A 25376914
    279597 4v3p:LG (34.0) BS01 rna ? GO:0003735 ... Q5I7L4 25376914
    279598 4v3p:LH (34.0) BS01 rna N/A GO:0003723 ... N/A 25376914
    279599 4v3p:LH (34.0) BS02 rna N/A GO:0003723 ... N/A 25376914
    279600 4v3p:LH (34.0) BS03 peptide N/A GO:0003723 ... N/A 25376914

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).