SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    280001 4v49:AI (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280002 4v49:AJ (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    280003 4v49:AK (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280004 4v49:AL (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280005 4v49:AM (8.7) BS01 rna N/A GO:0003676 ... N/A 12853578
    280006 4v49:AM (8.7) BS02 rna N/A GO:0003676 ... N/A 12853578
    280007 4v49:AM (8.7) BS03 rna N/A GO:0003676 ... N/A 12853578
    280008 4v49:AN (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280009 4v49:AO (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280010 4v49:AP (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280011 4v49:AQ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280012 4v49:AQ (8.7) BS02 rna N/A GO:0003735 ... N/A 12853578
    280013 4v49:AR (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280014 4v49:AS (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    280015 4v49:AT (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    280016 4v49:B1 (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280017 4v49:B5 (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    280018 4v49:BA (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    280019 4v49:BB (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280020 4v49:BC (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280021 4v49:BD (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280022 4v49:BG (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280023 4v49:BI (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280024 4v49:BJ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280025 4v49:BL (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280026 4v49:BO (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280027 4v49:BQ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280028 4v49:BX (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280029 4v49:BZ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    280030 4v4a:AB (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280031 4v4a:AC (9.5) BS01 rna N/A GO:0003676 ... N/A 12853578
    280032 4v4a:AD (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    280033 4v4a:AE (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    280034 4v4a:AF (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280035 4v4a:AG (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    280036 4v4a:AH (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280037 4v4a:AI (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280038 4v4a:AJ (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    280039 4v4a:AK (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280040 4v4a:AL (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280041 4v4a:AM (9.5) BS01 rna N/A GO:0003676 ... N/A 12853578
    280042 4v4a:AM (9.5) BS02 rna N/A GO:0003676 ... N/A 12853578
    280043 4v4a:AN (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280044 4v4a:AO (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280045 4v4a:AP (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280046 4v4a:AQ (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280047 4v4a:AQ (9.5) BS02 rna N/A GO:0003735 ... N/A 12853578
    280048 4v4a:AR (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280049 4v4a:AS (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    280050 4v4a:AT (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    280051 4v4a:B1 (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280052 4v4a:B5 (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    280053 4v4a:BA (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    280054 4v4a:BB (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280055 4v4a:BC (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280056 4v4a:BG (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280057 4v4a:BJ (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280058 4v4a:BL (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280059 4v4a:BO (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280060 4v4a:BQ (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280061 4v4a:BX (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280062 4v4a:BZ (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    280063 4v4b:AB (11.7) BS01 rna ? GO:0003735 ... P32905 14976550
    280064 4v4b:AC (11.7) BS01 rna ? GO:0003723 ... P05750 14976550
    280065 4v4b:AC (11.7) BS02 peptide ? GO:0003723 ... P05750 14976550
    280066 4v4b:AD (11.7) BS01 rna ? GO:0000462 ... O13516 14976550
    280067 4v4b:AE (11.7) BS01 rna ? GO:0003723 ... P25443 14976550
    280068 4v4b:AG (11.7) BS01 rna ? GO:0003723 ... P26783 14976550
    280069 4v4b:AH (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280070 4v4b:AI (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280071 4v4b:AJ (11.7) BS01 rna ? GO:0003723 ... P38701 14976550
    280072 4v4b:AJ (11.7) BS02 peptide ? GO:0003723 ... P38701 14976550
    280073 4v4b:AK (11.7) BS01 rna ? GO:0000028 ... P06367 14976550
    280074 4v4b:AL (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280075 4v4b:AM (11.7) BS01 rna N/A GO:0003676 ... N/A 14976550
    280076 4v4b:AO (11.7) BS01 rna ? GO:0003735 ... P05756 14976550
    280077 4v4b:AQ (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280078 4v4b:AS (11.7) BS01 rna ? GO:0003723 ... Q01855 14976550
    280079 4v4b:AT (11.7) BS01 rna 3.6.5.- GO:0003746 ... P32324 14976550
    280080 4v4b:AT (11.7) BS02 rna 3.6.5.- GO:0003746 ... P32324 14976550
    280081 4v4b:B0 (11.7) BS01 rna ? GO:0002181 ... P38061 14976550
    280082 4v4b:B9 (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280083 4v4b:BA (11.7) BS01 rna N/A GO:0003723 ... N/A 14976550
    280084 4v4b:BB (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280085 4v4b:BC (11.7) BS01 rna ? GO:0000027 ... P14126 14976550
    280086 4v4b:BD (11.7) BS01 rna ? GO:0002181 ... P49626 14976550
    280087 4v4b:BE (11.7) BS01 rna ? GO:0003735 ... P26321 14976550
    280088 4v4b:BE (11.7) BS02 rna ? GO:0003735 ... P26321 14976550
    280089 4v4b:BF (11.7) BS01 rna ? GO:0000463 ... P05737 14976550
    280090 4v4b:BF (11.7) BS02 rna ? GO:0000463 ... P05737 14976550
    280091 4v4b:BG (11.7) BS01 rna ? GO:0003723 ... P17076 14976550
    280092 4v4b:BH (11.7) BS01 rna ? GO:0002181 ... P05738 14976550
    280093 4v4b:BI (11.7) BS01 rna ? GO:0003735 ... P41805 14976550
    280094 4v4b:BJ (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280095 4v4b:BJ (11.7) BS02 rna N/A GO:0003735 ... N/A 14976550
    280096 4v4b:BK (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280097 4v4b:BL (11.7) BS01 rna ? GO:0002181 ... P05748 14976550
    280098 4v4b:BM (11.7) BS01 rna ? GO:0003735 ... P26784 14976550
    280099 4v4b:BN (11.7) BS01 rna ? GO:0000448 ... P05740 14976550
    280100 4v4b:BO (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280101 4v4b:BP (11.7) BS01 rna N/A GO:0003723 ... N/A 14976550
    280102 4v4b:BQ (11.7) BS01 rna ? GO:0003735 ... Q02753 14976550
    280103 4v4b:BR (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280104 4v4b:BR (11.7) BS02 rna N/A GO:0003735 ... N/A 14976550
    280105 4v4b:BS (11.7) BS01 rna ? GO:0003735 ... P04449 14976550
    280106 4v4b:BT (11.7) BS01 rna ? GO:0003735 ... P04456 14976550
    280107 4v4b:BU (11.7) BS01 rna ? GO:0002181 ... P05743 14976550
    280108 4v4b:BV (11.7) BS01 rna ? GO:0002181 ... P02406 14976550
    280109 4v4b:BW (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280110 4v4b:BX (11.7) BS01 rna N/A GO:0000463 ... N/A 14976550
    280111 4v4b:BY (11.7) BS01 rna ? GO:0000448 ... P49166 14976550
    280112 4v4b:BZ (11.7) BS01 rna N/A GO:0003735 ... N/A 14976550
    280113 4v4c:A (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280114 4v4c:A (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280115 4v4c:A (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280116 4v4c:B (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280117 4v4c:B (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280118 4v4c:B (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280119 4v4c:B (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280120 4v4c:C (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280121 4v4c:C (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280122 4v4c:C (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280123 4v4c:D (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280124 4v4c:D (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280125 4v4c:D (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280126 4v4c:D (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280127 4v4c:E (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280128 4v4c:E (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280129 4v4c:E (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280130 4v4c:F (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280131 4v4c:F (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280132 4v4c:F (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280133 4v4c:F (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280134 4v4c:G (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280135 4v4c:G (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280136 4v4c:G (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280137 4v4c:H (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280138 4v4c:H (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280139 4v4c:H (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280140 4v4c:H (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280141 4v4c:I (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280142 4v4c:I (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280143 4v4c:I (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280144 4v4c:J (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280145 4v4c:J (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280146 4v4c:J (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280147 4v4c:J (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280148 4v4c:K (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280149 4v4c:K (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280150 4v4c:K (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280151 4v4c:L (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280152 4v4c:L (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280153 4v4c:L (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280154 4v4c:L (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280155 4v4c:M (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280156 4v4c:M (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280157 4v4c:M (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280158 4v4c:N (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280159 4v4c:N (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280160 4v4c:N (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280161 4v4c:N (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280162 4v4c:O (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280163 4v4c:O (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280164 4v4c:O (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280165 4v4c:P (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280166 4v4c:P (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280167 4v4c:P (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280168 4v4c:P (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280169 4v4c:Q (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280170 4v4c:Q (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280171 4v4c:Q (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280172 4v4c:R (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280173 4v4c:R (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280174 4v4c:R (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280175 4v4c:R (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280176 4v4c:S (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280177 4v4c:S (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280178 4v4c:S (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280179 4v4c:T (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280180 4v4c:T (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280181 4v4c:T (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280182 4v4c:T (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280183 4v4c:U (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280184 4v4c:U (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280185 4v4c:U (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280186 4v4c:V (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280187 4v4c:V (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280188 4v4c:V (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280189 4v4c:V (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280190 4v4c:W (2.35) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280191 4v4c:W (2.35) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280192 4v4c:W (2.35) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280193 4v4c:X (2.35) BS01 CA 1.97.1.2 GO:0016491 ... P80564 15284442
    280194 4v4c:X (2.35) BS02 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280195 4v4c:X (2.35) BS03 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280196 4v4c:X (2.35) BS04 SF4 1.97.1.2 GO:0016491 ... P80564 15284442
    280197 4v4d:A (2.2) BS01 CA 1.97.1.2 GO:0009055 ... P80563 15284442
    280198 4v4d:A (2.2) BS02 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280199 4v4d:A (2.2) BS03 MGD 1.97.1.2 GO:0009055 ... P80563 15284442
    280200 4v4d:A (2.2) BS04 PYG 1.97.1.2 GO:0009055 ... P80563 15284442

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).