SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    280401 4v4f:AD (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280402 4v4f:AD (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280403 4v4f:AD (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280404 4v4f:AE (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280405 4v4f:AE (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280406 4v4f:AE (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280407 4v4f:AE (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280408 4v4f:AF (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280409 4v4f:AF (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280410 4v4f:AF (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280411 4v4f:AF (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280412 4v4f:AG (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280413 4v4f:AG (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280414 4v4f:AG (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280415 4v4f:AG (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280416 4v4f:AH (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280417 4v4f:AH (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280418 4v4f:AH (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280419 4v4f:AH (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280420 4v4f:AI (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280421 4v4f:AI (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280422 4v4f:AI (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280423 4v4f:AI (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280424 4v4f:AJ (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280425 4v4f:AJ (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280426 4v4f:AJ (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280427 4v4f:AJ (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280428 4v4f:AK (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280429 4v4f:AK (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280430 4v4f:AK (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280431 4v4f:AK (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280432 4v4f:AL (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280433 4v4f:AL (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280434 4v4f:AM (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280435 4v4f:AM (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280436 4v4f:AN (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280437 4v4f:AN (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280438 4v4f:AO (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280439 4v4f:AO (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280440 4v4f:AP (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280441 4v4f:AP (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280442 4v4f:AQ (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280443 4v4f:AQ (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280444 4v4f:AR (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280445 4v4f:AR (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280446 4v4f:AS (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280447 4v4f:AS (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280448 4v4f:AT (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280449 4v4f:AT (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280450 4v4f:AU (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280451 4v4f:AU (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280452 4v4f:AV (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280453 4v4f:AV (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280454 4v4f:BA (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280455 4v4f:BA (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280456 4v4f:BA (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280457 4v4f:BA (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280458 4v4f:BB (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280459 4v4f:BB (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280460 4v4f:BB (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280461 4v4f:BB (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280462 4v4f:BC (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280463 4v4f:BC (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280464 4v4f:BC (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280465 4v4f:BC (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280466 4v4f:BD (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280467 4v4f:BD (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280468 4v4f:BD (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280469 4v4f:BD (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280470 4v4f:BE (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280471 4v4f:BE (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280472 4v4f:BE (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280473 4v4f:BE (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280474 4v4f:BF (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280475 4v4f:BF (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280476 4v4f:BF (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280477 4v4f:BF (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280478 4v4f:BG (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280479 4v4f:BG (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280480 4v4f:BG (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280481 4v4f:BG (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280482 4v4f:BH (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280483 4v4f:BH (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280484 4v4f:BH (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280485 4v4f:BH (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280486 4v4f:BI (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280487 4v4f:BI (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280488 4v4f:BI (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280489 4v4f:BI (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280490 4v4f:BJ (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280491 4v4f:BJ (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280492 4v4f:BJ (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280493 4v4f:BJ (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280494 4v4f:BK (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 15050822
    280495 4v4f:BK (1.9) BS02 rna ? GO:0003723 ... Q9X6J6 15050822
    280496 4v4f:BK (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    280497 4v4f:BK (1.9) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    280498 4v4f:BL (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280499 4v4f:BL (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280500 4v4f:BM (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280501 4v4f:BM (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280502 4v4f:BN (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280503 4v4f:BN (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280504 4v4f:BO (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280505 4v4f:BO (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280506 4v4f:BP (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280507 4v4f:BP (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280508 4v4f:BQ (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280509 4v4f:BQ (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280510 4v4f:BR (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280511 4v4f:BR (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280512 4v4f:BS (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280513 4v4f:BS (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280514 4v4f:BT (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280515 4v4f:BT (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280516 4v4f:BU (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280517 4v4f:BU (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280518 4v4f:BV (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    280519 4v4f:BV (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    280520 4v4g:AB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280521 4v4g:AC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280522 4v4g:AD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280523 4v4g:AE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280524 4v4g:AF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280525 4v4g:AG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280526 4v4g:AH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280527 4v4g:AI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280528 4v4g:AJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280529 4v4g:AK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280530 4v4g:AL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280531 4v4g:AM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280532 4v4g:AM (11.5) BS02 rna N/A GO:0003676 ... N/A 15502846
    280533 4v4g:AN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280534 4v4g:AO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280535 4v4g:AO (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280536 4v4g:AP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280537 4v4g:AQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280538 4v4g:AQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280539 4v4g:AR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280540 4v4g:AS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280541 4v4g:AT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280542 4v4g:AT (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    280543 4v4g:Aa (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    280544 4v4g:B1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280545 4v4g:B2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280546 4v4g:B3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280547 4v4g:B4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280548 4v4g:B5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280549 4v4g:B6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280550 4v4g:B7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280551 4v4g:BD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280552 4v4g:BD (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    280553 4v4g:BE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280554 4v4g:BF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280555 4v4g:BG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280556 4v4g:BG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280557 4v4g:BH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280558 4v4g:BI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280559 4v4g:BJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280560 4v4g:BK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280561 4v4g:BL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280562 4v4g:BL (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280563 4v4g:BM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280564 4v4g:BN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280565 4v4g:BN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280566 4v4g:BO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280567 4v4g:BP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280568 4v4g:BP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280569 4v4g:BQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280570 4v4g:BQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280571 4v4g:BR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280572 4v4g:BS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280573 4v4g:BT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280574 4v4g:BU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280575 4v4g:BV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280576 4v4g:BW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280577 4v4g:BW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280578 4v4g:BX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280579 4v4g:BY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280580 4v4g:BZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280581 4v4g:CB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280582 4v4g:CC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280583 4v4g:CD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280584 4v4g:CE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280585 4v4g:CF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280586 4v4g:CG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280587 4v4g:CH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280588 4v4g:CI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280589 4v4g:CJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280590 4v4g:CK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280591 4v4g:CL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280592 4v4g:CM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280593 4v4g:CN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280594 4v4g:CO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280595 4v4g:CO (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280596 4v4g:CP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280597 4v4g:CQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280598 4v4g:CR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280599 4v4g:CS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280600 4v4g:CT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).