SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    280601 4v4g:Ca (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    280602 4v4g:D1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280603 4v4g:D2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280604 4v4g:D3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280605 4v4g:D4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280606 4v4g:D5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280607 4v4g:D6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280608 4v4g:D7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280609 4v4g:DD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280610 4v4g:DD (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    280611 4v4g:DE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280612 4v4g:DF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280613 4v4g:DG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280614 4v4g:DG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280615 4v4g:DG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    280616 4v4g:DH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280617 4v4g:DI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280618 4v4g:DJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280619 4v4g:DK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280620 4v4g:DL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280621 4v4g:DM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280622 4v4g:DN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280623 4v4g:DN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280624 4v4g:DO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280625 4v4g:DP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280626 4v4g:DP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280627 4v4g:DQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280628 4v4g:DQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280629 4v4g:DR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280630 4v4g:DS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280631 4v4g:DT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280632 4v4g:DU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280633 4v4g:DV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280634 4v4g:DW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280635 4v4g:DW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280636 4v4g:DX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280637 4v4g:DY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280638 4v4g:DZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280639 4v4g:DZ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280640 4v4g:EB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280641 4v4g:EC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280642 4v4g:ED (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280643 4v4g:EE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280644 4v4g:EF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280645 4v4g:EG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280646 4v4g:EH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280647 4v4g:EI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280648 4v4g:EJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280649 4v4g:EK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280650 4v4g:EL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280651 4v4g:EM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280652 4v4g:EM (11.5) BS02 rna N/A GO:0003676 ... N/A 15502846
    280653 4v4g:EN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280654 4v4g:EO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280655 4v4g:EP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280656 4v4g:EQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280657 4v4g:ER (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280658 4v4g:ES (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280659 4v4g:ET (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280660 4v4g:Ea (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    280661 4v4g:F1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280662 4v4g:F2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280663 4v4g:F3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280664 4v4g:F4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280665 4v4g:F5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280666 4v4g:F6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280667 4v4g:F7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280668 4v4g:FD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280669 4v4g:FD (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    280670 4v4g:FE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280671 4v4g:FF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280672 4v4g:FG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280673 4v4g:FG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280674 4v4g:FG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    280675 4v4g:FH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280676 4v4g:FI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280677 4v4g:FJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280678 4v4g:FK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280679 4v4g:FL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280680 4v4g:FM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280681 4v4g:FN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280682 4v4g:FN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280683 4v4g:FO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280684 4v4g:FP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280685 4v4g:FP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280686 4v4g:FQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280687 4v4g:FQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280688 4v4g:FR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280689 4v4g:FS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280690 4v4g:FT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280691 4v4g:FU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280692 4v4g:FV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280693 4v4g:FW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280694 4v4g:FW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280695 4v4g:FX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280696 4v4g:FX (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280697 4v4g:FY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280698 4v4g:FZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280699 4v4g:FZ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280700 4v4g:GB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280701 4v4g:GC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280702 4v4g:GD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280703 4v4g:GE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280704 4v4g:GF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280705 4v4g:GG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280706 4v4g:GH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280707 4v4g:GI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280708 4v4g:GJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280709 4v4g:GK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280710 4v4g:GL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280711 4v4g:GM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280712 4v4g:GN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280713 4v4g:GO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280714 4v4g:GO (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280715 4v4g:GP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280716 4v4g:GQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280717 4v4g:GR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280718 4v4g:GS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280719 4v4g:GT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280720 4v4g:GT (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    280721 4v4g:Ga (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    280722 4v4g:H1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280723 4v4g:H2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280724 4v4g:H3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280725 4v4g:H4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280726 4v4g:H5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280727 4v4g:H6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280728 4v4g:H7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280729 4v4g:HD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280730 4v4g:HD (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    280731 4v4g:HE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280732 4v4g:HF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280733 4v4g:HG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280734 4v4g:HG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280735 4v4g:HG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    280736 4v4g:HH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280737 4v4g:HI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280738 4v4g:HJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280739 4v4g:HK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280740 4v4g:HL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280741 4v4g:HL (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280742 4v4g:HM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280743 4v4g:HN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280744 4v4g:HN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280745 4v4g:HO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280746 4v4g:HP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280747 4v4g:HP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280748 4v4g:HQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280749 4v4g:HQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280750 4v4g:HR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280751 4v4g:HS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280752 4v4g:HT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280753 4v4g:HU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280754 4v4g:HV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280755 4v4g:HW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280756 4v4g:HW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280757 4v4g:HX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280758 4v4g:HY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280759 4v4g:HZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280760 4v4g:IB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280761 4v4g:IC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280762 4v4g:ID (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280763 4v4g:IE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280764 4v4g:IF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280765 4v4g:IG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280766 4v4g:IH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280767 4v4g:II (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280768 4v4g:IJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280769 4v4g:IK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280770 4v4g:IL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280771 4v4g:IM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    280772 4v4g:IN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280773 4v4g:IO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280774 4v4g:IO (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280775 4v4g:IP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280776 4v4g:IQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280777 4v4g:IR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280778 4v4g:IS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280779 4v4g:IT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280780 4v4g:Ia (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    280781 4v4g:J1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280782 4v4g:J2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280783 4v4g:J3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280784 4v4g:J4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280785 4v4g:J5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280786 4v4g:J6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280787 4v4g:J7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280788 4v4g:JD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280789 4v4g:JE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280790 4v4g:JF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280791 4v4g:JG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280792 4v4g:JG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280793 4v4g:JG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    280794 4v4g:JH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280795 4v4g:JI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280796 4v4g:JJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280797 4v4g:JK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280798 4v4g:JL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280799 4v4g:JM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280800 4v4g:JN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).