SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    280801 4v4g:JN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280802 4v4g:JO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280803 4v4g:JP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280804 4v4g:JP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280805 4v4g:JQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280806 4v4g:JQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280807 4v4g:JR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280808 4v4g:JS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280809 4v4g:JT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280810 4v4g:JU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280811 4v4g:JV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    280812 4v4g:JW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280813 4v4g:JW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280814 4v4g:JX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280815 4v4g:JX (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    280816 4v4g:JY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280817 4v4g:JZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280818 4v4h:AB (3.46) BS01 rna ? GO:0000028 ... P0A7V0 16998486
    280819 4v4h:AC (3.46) BS01 rna ? GO:0000028 ... P0A7V3 16998486
    280820 4v4h:AD (3.46) BS01 rna ? GO:0000028 ... P0A7V8 16998486
    280821 4v4h:AE (3.46) BS01 rna ? GO:0000028 ... P0A7W1 16998486
    280822 4v4h:AF (3.46) BS01 rna ? GO:0002181 ... P02358 16998486
    280823 4v4h:AG (3.46) BS01 rna ? GO:0000028 ... P02359 16998486
    280824 4v4h:AH (3.46) BS01 rna ? GO:0000028 ... P0A7W7 16998486
    280825 4v4h:AI (3.46) BS01 rna ? GO:0000049 ... P0A7X3 16998486
    280826 4v4h:AJ (3.46) BS01 rna ? GO:0000049 ... P0A7R5 16998486
    280827 4v4h:AK (3.46) BS01 rna ? GO:0002181 ... P0A7R9 16998486
    280828 4v4h:AK (3.46) BS02 rna ? GO:0002181 ... P0A7R9 16998486
    280829 4v4h:AL (3.46) BS01 rna ? GO:0000049 ... P0A7S3 16998486
    280830 4v4h:AM (3.46) BS01 rna ? GO:0000049 ... P0A7S9 16998486
    280831 4v4h:AN (3.46) BS01 rna ? GO:0000028 ... P0AG59 16998486
    280832 4v4h:AO (3.46) BS01 rna ? GO:0000028 ... P0ADZ4 16998486
    280833 4v4h:AO (3.46) BS02 rna ? GO:0000028 ... P0ADZ4 16998486
    280834 4v4h:AP (3.46) BS01 rna ? GO:0000028 ... P0A7T3 16998486
    280835 4v4h:AQ (3.46) BS01 rna ? GO:0000028 ... P0AG63 16998486
    280836 4v4h:AR (3.46) BS01 rna ? GO:0002181 ... P0A7T7 16998486
    280837 4v4h:AS (3.46) BS01 rna ? GO:0000028 ... P0A7U3 16998486
    280838 4v4h:AT (3.46) BS01 rna ? GO:0000028 ... P0A7U7 16998486
    280839 4v4h:AU (3.46) BS01 rna ? GO:0000028 ... P68679 16998486
    280840 4v4h:B0 (3.46) BS01 rna ? GO:0000027 ... P0A7N4 16998486
    280841 4v4h:B1 (3.46) BS01 rna ? GO:0000027 ... P0A7N9 16998486
    280842 4v4h:B2 (3.46) BS01 rna ? GO:0002181 ... P0A7P5 16998486
    280843 4v4h:B3 (3.46) BS01 rna ? GO:0002181 ... P0A7Q1 16998486
    280844 4v4h:B4 (3.46) BS01 rna ? GO:0002181 ... P0A7Q6 16998486
    280845 4v4h:BC (3.46) BS01 rna ? GO:0000027 ... P60422 16998486
    280846 4v4h:BD (3.46) BS01 rna ? GO:0000027 ... P60438 16998486
    280847 4v4h:BE (3.46) BS01 rna ? GO:0001070 ... P60723 16998486
    280848 4v4h:BF (3.46) BS01 rna ? GO:0000027 ... P62399 16998486
    280849 4v4h:BF (3.46) BS02 rna ? GO:0000027 ... P62399 16998486
    280850 4v4h:BG (3.46) BS01 rna N/A GO:0003735 ... N/A 16998486
    280851 4v4h:BH (3.46) BS01 rna ? GO:0002181 ... P0A7R1 16998486
    280852 4v4h:BH (3.46) BS02 rna ? GO:0002181 ... P0A7R1 16998486
    280853 4v4h:BI (3.46) BS01 rna ? GO:0000027 ... P0A7J7 16998486
    280854 4v4h:BJ (3.46) BS01 rna N/A GO:0003735 ... N/A 16998486
    280855 4v4h:BK (3.46) BS01 rna ? GO:0002181 ... P0ADY3 16998486
    280856 4v4h:BK (3.46) BS02 rna ? GO:0002181 ... P0ADY3 16998486
    280857 4v4h:BL (3.46) BS01 rna ? GO:0002181 ... P02413 16998486
    280858 4v4h:BM (3.46) BS01 rna ? GO:0000027 ... P0ADY7 16998486
    280859 4v4h:BN (3.46) BS01 rna ? GO:0000027 ... P0AG44 16998486
    280860 4v4h:BO (3.46) BS01 rna ? GO:0002181 ... P0C018 16998486
    280861 4v4h:BO (3.46) BS02 rna ? GO:0002181 ... P0C018 16998486
    280862 4v4h:BP (3.46) BS01 rna ? GO:0000027 ... P0A7K6 16998486
    280863 4v4h:BP (3.46) BS02 rna ? GO:0000027 ... P0A7K6 16998486
    280864 4v4h:BQ (3.46) BS01 rna ? GO:0000027 ... P0A7L3 16998486
    280865 4v4h:BR (3.46) BS01 rna ? GO:0002181 ... P0AG48 16998486
    280866 4v4h:BS (3.46) BS01 rna ? GO:0002181 ... P61175 16998486
    280867 4v4h:BT (3.46) BS01 rna ? GO:0000027 ... P0ADZ0 16998486
    280868 4v4h:BU (3.46) BS01 rna ? GO:0000027 ... P60624 16998486
    280869 4v4h:BV (3.46) BS01 rna ? GO:0000027 ... P68919 16998486
    280870 4v4h:BV (3.46) BS02 rna ? GO:0000027 ... P68919 16998486
    280871 4v4h:BW (3.46) BS01 rna ? GO:0000027 ... P0A7L8 16998486
    280872 4v4h:BW (3.46) BS02 rna ? GO:0000027 ... P0A7L8 16998486
    280873 4v4h:BX (3.46) BS01 rna ? GO:0000027 ... P0A7M6 16998486
    280874 4v4h:BY (3.46) BS01 rna ? GO:0000027 ... P0AG51 16998486
    280875 4v4h:BY (3.46) BS02 rna ? GO:0000027 ... P0AG51 16998486
    280876 4v4h:BZ (3.46) BS01 rna ? GO:0002181 ... P0A7M9 16998486
    280877 4v4h:CB (3.46) BS01 rna ? GO:0000028 ... P0A7V0 16998486
    280878 4v4h:CC (3.46) BS01 rna ? GO:0000028 ... P0A7V3 16998486
    280879 4v4h:CD (3.46) BS01 rna ? GO:0000028 ... P0A7V8 16998486
    280880 4v4h:CE (3.46) BS01 rna ? GO:0000028 ... P0A7W1 16998486
    280881 4v4h:CF (3.46) BS01 rna ? GO:0002181 ... P02358 16998486
    280882 4v4h:CG (3.46) BS01 rna ? GO:0000028 ... P02359 16998486
    280883 4v4h:CH (3.46) BS01 rna ? GO:0000028 ... P0A7W7 16998486
    280884 4v4h:CI (3.46) BS01 rna ? GO:0000049 ... P0A7X3 16998486
    280885 4v4h:CJ (3.46) BS01 rna ? GO:0000049 ... P0A7R5 16998486
    280886 4v4h:CJ (3.46) BS02 rna ? GO:0000049 ... P0A7R5 16998486
    280887 4v4h:CK (3.46) BS01 rna ? GO:0002181 ... P0A7R9 16998486
    280888 4v4h:CL (3.46) BS01 rna ? GO:0000049 ... P0A7S3 16998486
    280889 4v4h:CM (3.46) BS01 rna ? GO:0000049 ... P0A7S9 16998486
    280890 4v4h:CN (3.46) BS01 rna ? GO:0000028 ... P0AG59 16998486
    280891 4v4h:CO (3.46) BS01 rna ? GO:0000028 ... P0ADZ4 16998486
    280892 4v4h:CO (3.46) BS02 rna ? GO:0000028 ... P0ADZ4 16998486
    280893 4v4h:CP (3.46) BS01 rna ? GO:0000028 ... P0A7T3 16998486
    280894 4v4h:CQ (3.46) BS01 rna ? GO:0000028 ... P0AG63 16998486
    280895 4v4h:CR (3.46) BS01 rna ? GO:0002181 ... P0A7T7 16998486
    280896 4v4h:CS (3.46) BS01 rna ? GO:0000028 ... P0A7U3 16998486
    280897 4v4h:CT (3.46) BS01 rna ? GO:0000028 ... P0A7U7 16998486
    280898 4v4h:CU (3.46) BS01 rna ? GO:0000028 ... P68679 16998486
    280899 4v4h:D0 (3.46) BS01 rna ? GO:0000027 ... P0A7N4 16998486
    280900 4v4h:D1 (3.46) BS01 rna ? GO:0000027 ... P0A7N9 16998486
    280901 4v4h:D2 (3.46) BS01 rna ? GO:0002181 ... P0A7P5 16998486
    280902 4v4h:D3 (3.46) BS01 rna ? GO:0002181 ... P0A7Q1 16998486
    280903 4v4h:D4 (3.46) BS01 rna ? GO:0002181 ... P0A7Q6 16998486
    280904 4v4h:DC (3.46) BS01 rna ? GO:0000027 ... P60422 16998486
    280905 4v4h:DD (3.46) BS01 rna ? GO:0000027 ... P60438 16998486
    280906 4v4h:DE (3.46) BS01 rna ? GO:0001070 ... P60723 16998486
    280907 4v4h:DF (3.46) BS01 rna ? GO:0000027 ... P62399 16998486
    280908 4v4h:DF (3.46) BS02 rna ? GO:0000027 ... P62399 16998486
    280909 4v4h:DG (3.46) BS01 rna N/A GO:0003735 ... N/A 16998486
    280910 4v4h:DH (3.46) BS01 rna ? GO:0002181 ... P0A7R1 16998486
    280911 4v4h:DI (3.46) BS01 rna ? GO:0000027 ... P0A7J7 16998486
    280912 4v4h:DJ (3.46) BS01 rna N/A GO:0003735 ... N/A 16998486
    280913 4v4h:DK (3.46) BS01 rna ? GO:0002181 ... P0ADY3 16998486
    280914 4v4h:DK (3.46) BS02 rna ? GO:0002181 ... P0ADY3 16998486
    280915 4v4h:DL (3.46) BS01 rna ? GO:0002181 ... P02413 16998486
    280916 4v4h:DM (3.46) BS01 rna ? GO:0000027 ... P0ADY7 16998486
    280917 4v4h:DN (3.46) BS01 rna ? GO:0000027 ... P0AG44 16998486
    280918 4v4h:DO (3.46) BS01 rna ? GO:0002181 ... P0C018 16998486
    280919 4v4h:DO (3.46) BS02 rna ? GO:0002181 ... P0C018 16998486
    280920 4v4h:DP (3.46) BS01 rna ? GO:0000027 ... P0A7K6 16998486
    280921 4v4h:DP (3.46) BS02 rna ? GO:0000027 ... P0A7K6 16998486
    280922 4v4h:DQ (3.46) BS01 rna ? GO:0000027 ... P0A7L3 16998486
    280923 4v4h:DR (3.46) BS01 rna ? GO:0002181 ... P0AG48 16998486
    280924 4v4h:DS (3.46) BS01 rna ? GO:0002181 ... P61175 16998486
    280925 4v4h:DT (3.46) BS01 rna ? GO:0000027 ... P0ADZ0 16998486
    280926 4v4h:DU (3.46) BS01 rna ? GO:0000027 ... P60624 16998486
    280927 4v4h:DV (3.46) BS01 rna ? GO:0000027 ... P68919 16998486
    280928 4v4h:DW (3.46) BS01 rna ? GO:0000027 ... P0A7L8 16998486
    280929 4v4h:DX (3.46) BS01 rna ? GO:0000027 ... P0A7M6 16998486
    280930 4v4h:DY (3.46) BS01 rna ? GO:0000027 ... P0AG51 16998486
    280931 4v4h:DY (3.46) BS02 rna ? GO:0000027 ... P0AG51 16998486
    280932 4v4h:DZ (3.46) BS01 rna ? GO:0002181 ... P0A7M9 16998486
    280933 4v4i:A (3.71) BS01 rna ? GO:0000049 ... Q5SLP7 16962654
    280934 4v4i:A (3.71) BS02 rna ? GO:0000049 ... Q5SLP7 16962654
    280935 4v4i:B (3.71) BS01 rna ? GO:0002181 ... P60405 16962654
    280936 4v4i:B (3.71) BS02 rna ? GO:0002181 ... P60405 16962654
    280937 4v4i:C (3.71) BS01 rna ? GO:0003735 ... Q5SHN8 16962654
    280938 4v4i:D (3.71) BS01 rna ? GO:0003735 ... Q5SHN9 16962654
    280939 4v4i:E (3.71) BS01 rna ? GO:0000049 ... Q5SHQ0 16962654
    280940 4v4i:E (3.71) BS02 rna ? GO:0000049 ... Q5SHQ0 16962654
    280941 4v4i:E (3.71) BS03 rna ? GO:0000049 ... Q5SHQ0 16962654
    280942 4v4i:F (3.71) BS01 rna ? GO:0002181 ... P0DOY8 16962654
    280943 4v4i:G (3.71) BS01 rna ? GO:0003735 ... Q5SLQ1 16962654
    280944 4v4i:H (3.71) BS01 rna ? GO:0003729 ... P60488 16962654
    280945 4v4i:I (3.71) BS01 rna ? GO:0003735 ... Q5SHP8 16962654
    280946 4v4i:I (3.71) BS02 rna ? GO:0003735 ... Q5SHP8 16962654
    280947 4v4i:J (3.71) BS01 rna ? GO:0003735 ... Q5SHQ7 16962654
    280948 4v4i:K (3.71) BS01 rna ? GO:0000049 ... P60489 16962654
    280949 4v4i:L (3.71) BS01 rna ? GO:0003735 ... Q9Z9H5 16962654
    280950 4v4i:M (3.71) BS01 rna ? GO:0003735 ... Q5SHQ4 16962654
    280951 4v4i:M (3.71) BS02 rna ? GO:0003735 ... Q5SHQ4 16962654
    280952 4v4i:N (3.71) BS01 rna ? GO:0003735 ... P60490 16962654
    280953 4v4i:N (3.71) BS02 rna ? GO:0003735 ... P60490 16962654
    280954 4v4i:O (3.71) BS01 rna ? GO:0000027 ... P60491 16962654
    280955 4v4i:P (3.71) BS01 rna ? GO:0003723 ... P60492 16962654
    280956 4v4i:Q (3.71) BS01 rna ? GO:0003735 ... Q5SHP3 16962654
    280957 4v4i:R (3.71) BS01 rna ? GO:0003735 ... Q5SHP0 16962654
    280958 4v4i:S (3.71) BS01 rna ? GO:0003723 ... Q5SHP9 16962654
    280959 4v4i:T (3.71) BS01 rna ? GO:0003723 ... Q5SHZ1 16962654
    280960 4v4i:T (3.71) BS02 rna ? GO:0003723 ... Q5SHZ1 16962654
    280961 4v4i:U (3.71) BS01 rna ? GO:0003735 ... P60493 16962654
    280962 4v4i:U (3.71) BS02 rna ? GO:0003735 ... P60493 16962654
    280963 4v4i:V (3.71) BS01 rna ? GO:0003735 ... P60494 16962654
    280964 4v4i:V (3.71) BS02 rna ? GO:0003735 ... P60494 16962654
    280965 4v4i:W (3.71) BS01 rna ? GO:0003735 ... Q5SHP6 16962654
    280966 4v4i:X (3.71) BS01 rna ? GO:0003735 ... Q5SHQ6 16962654
    280967 4v4i:X (3.71) BS02 rna ? GO:0003735 ... Q5SHQ6 16962654
    280968 4v4i:Y (3.71) BS01 rna ? GO:0003735 ... P80339 16962654
    280969 4v4i:Z (3.71) BS01 rna ? GO:0003735 ... P80340 16962654
    280970 4v4i:a (3.71) BS01 rna ? GO:0003735 ... Q5SKU1 16962654
    280971 4v4i:b (3.71) BS01 rna ? GO:0003735 ... Q5SHR2 16962654
    280972 4v4i:c (3.71) BS01 rna ? GO:0003735 ... P80371 16962654
    280973 4v4i:d (3.71) BS01 rna ? GO:0003676 ... P80372 16962654
    280974 4v4i:e (3.71) BS01 rna ? GO:0003723 ... P80373 16962654
    280975 4v4i:f (3.71) BS01 rna ? GO:0003723 ... Q5SHQ5 16962654
    280976 4v4i:g (3.71) BS01 rna ? GO:0003735 ... Q5SLP8 16962654
    280977 4v4i:h (3.71) BS01 rna ? GO:0000049 ... P17291 16962654
    280978 4v4i:h (3.71) BS02 rna ? GO:0000049 ... P17291 16962654
    280979 4v4i:h (3.71) BS03 rna ? GO:0000049 ... P17291 16962654
    280980 4v4i:i (3.71) BS01 rna ? GO:0003735 ... P0DOY9 16962654
    280981 4v4i:j (3.71) BS01 rna ? GO:0000049 ... P80374 16962654
    280982 4v4i:k (3.71) BS01 rna ? GO:0000049 ... Q5SHN7 16962654
    280983 4v4i:l (3.71) BS01 rna ? GO:0003735 ... P80376 16962654
    280984 4v4i:m (3.71) BS01 rna ? GO:0000049 ... Q5SHN3 16962654
    280985 4v4i:n (3.71) BS01 rna ? GO:0000049 ... P80377 16962654
    280986 4v4i:n (3.71) BS02 rna ? GO:0000049 ... P80377 16962654
    280987 4v4i:o (3.71) BS01 rna ? GO:0003735 ... P0DOY6 16962654
    280988 4v4i:p (3.71) BS01 rna ? GO:0003735 ... Q5SJ76 16962654
    280989 4v4i:p (3.71) BS02 rna ? GO:0003735 ... Q5SJ76 16962654
    280990 4v4i:q (3.71) BS01 rna ? GO:0003735 ... Q5SJH3 16962654
    280991 4v4i:r (3.71) BS01 rna ? GO:0003735 ... P0DOY7 16962654
    280992 4v4i:s (3.71) BS01 rna ? GO:0003735 ... Q5SLQ0 16962654
    280993 4v4i:t (3.71) BS01 rna ? GO:0000028 ... Q5SHP2 16962654
    280994 4v4i:u (3.71) BS01 rna ? GO:0003723 ... P80380 16962654
    280995 4v4j:A (3.83) BS01 rna ? GO:0000049 ... Q5SLP7 17940016
    280996 4v4j:A (3.83) BS02 rna ? GO:0000049 ... Q5SLP7 17940016
    280997 4v4j:B (3.83) BS01 rna ? GO:0002181 ... P60405 17940016
    280998 4v4j:C (3.83) BS01 rna ? GO:0003735 ... Q5SHN8 17940016
    280999 4v4j:D (3.83) BS01 rna ? GO:0003735 ... Q5SHN9 17940016
    281000 4v4j:E (3.83) BS01 rna ? GO:0000049 ... Q5SHQ0 17940016

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).