SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    281001 4v4j:E (3.83) BS02 rna ? GO:0000049 ... Q5SHQ0 17940016
    281002 4v4j:E (3.83) BS03 rna ? GO:0000049 ... Q5SHQ0 17940016
    281003 4v4j:F (3.83) BS01 rna ? GO:0002181 ... P0DOY8 17940016
    281004 4v4j:G (3.83) BS01 rna ? GO:0003735 ... Q5SLQ1 17940016
    281005 4v4j:H (3.83) BS01 rna ? GO:0003729 ... P60488 17940016
    281006 4v4j:I (3.83) BS01 rna ? GO:0003735 ... Q5SHP8 17940016
    281007 4v4j:I (3.83) BS02 rna ? GO:0003735 ... Q5SHP8 17940016
    281008 4v4j:J (3.83) BS01 rna ? GO:0003735 ... Q5SHQ7 17940016
    281009 4v4j:K (3.83) BS01 rna ? GO:0000049 ... P60489 17940016
    281010 4v4j:L (3.83) BS01 rna ? GO:0003735 ... Q9Z9H5 17940016
    281011 4v4j:M (3.83) BS01 rna ? GO:0003735 ... Q5SHQ4 17940016
    281012 4v4j:M (3.83) BS02 rna ? GO:0003735 ... Q5SHQ4 17940016
    281013 4v4j:N (3.83) BS01 rna ? GO:0003735 ... P60490 17940016
    281014 4v4j:N (3.83) BS02 rna ? GO:0003735 ... P60490 17940016
    281015 4v4j:O (3.83) BS01 rna ? GO:0000027 ... P60491 17940016
    281016 4v4j:P (3.83) BS01 rna ? GO:0003723 ... P60492 17940016
    281017 4v4j:Q (3.83) BS01 rna ? GO:0003735 ... Q5SHP3 17940016
    281018 4v4j:R (3.83) BS01 rna ? GO:0003735 ... Q5SHP0 17940016
    281019 4v4j:S (3.83) BS01 rna ? GO:0003723 ... Q5SHP9 17940016
    281020 4v4j:T (3.83) BS01 rna ? GO:0003723 ... Q5SHZ1 17940016
    281021 4v4j:T (3.83) BS02 rna ? GO:0003723 ... Q5SHZ1 17940016
    281022 4v4j:U (3.83) BS01 rna ? GO:0003735 ... P60493 17940016
    281023 4v4j:U (3.83) BS02 rna ? GO:0003735 ... P60493 17940016
    281024 4v4j:V (3.83) BS01 rna ? GO:0003735 ... P60494 17940016
    281025 4v4j:V (3.83) BS02 rna ? GO:0003735 ... P60494 17940016
    281026 4v4j:W (3.83) BS01 rna ? GO:0003735 ... Q5SHP6 17940016
    281027 4v4j:X (3.83) BS01 rna ? GO:0003735 ... Q5SHQ6 17940016
    281028 4v4j:Y (3.83) BS01 rna ? GO:0003735 ... P80339 17940016
    281029 4v4j:Z (3.83) BS01 rna ? GO:0003735 ... P80340 17940016
    281030 4v4j:a (3.83) BS01 rna ? GO:0003735 ... Q5SKU1 17940016
    281031 4v4j:b (3.83) BS01 rna ? GO:0003735 ... Q5SHR2 17940016
    281032 4v4j:c (3.83) BS01 rna ? GO:0003735 ... P80371 17940016
    281033 4v4j:d (3.83) BS01 rna ? GO:0003676 ... P80372 17940016
    281034 4v4j:e (3.83) BS01 rna ? GO:0003723 ... P80373 17940016
    281035 4v4j:f (3.83) BS01 rna ? GO:0003723 ... Q5SHQ5 17940016
    281036 4v4j:g (3.83) BS01 rna ? GO:0003735 ... Q5SLP8 17940016
    281037 4v4j:h (3.83) BS01 rna ? GO:0000049 ... P17291 17940016
    281038 4v4j:h (3.83) BS02 rna ? GO:0000049 ... P17291 17940016
    281039 4v4j:i (3.83) BS01 rna ? GO:0003735 ... P0DOY9 17940016
    281040 4v4j:j (3.83) BS01 rna ? GO:0000049 ... P80374 17940016
    281041 4v4j:k (3.83) BS01 rna ? GO:0000049 ... Q5SHN7 17940016
    281042 4v4j:l (3.83) BS01 rna ? GO:0003735 ... P80376 17940016
    281043 4v4j:m (3.83) BS01 rna ? GO:0000049 ... Q5SHN3 17940016
    281044 4v4j:n (3.83) BS01 rna ? GO:0000049 ... P80377 17940016
    281045 4v4j:n (3.83) BS02 rna ? GO:0000049 ... P80377 17940016
    281046 4v4j:n (3.83) BS03 peptide ? GO:0000049 ... P80377 17940016
    281047 4v4j:o (3.83) BS01 rna ? GO:0003735 ... P0DOY6 17940016
    281048 4v4j:p (3.83) BS01 rna ? GO:0003735 ... Q5SJ76 17940016
    281049 4v4j:p (3.83) BS02 rna ? GO:0003735 ... Q5SJ76 17940016
    281050 4v4j:q (3.83) BS01 rna ? GO:0003735 ... Q5SJH3 17940016
    281051 4v4j:r (3.83) BS01 rna ? GO:0003735 ... P0DOY7 17940016
    281052 4v4j:s (3.83) BS01 rna ? GO:0003735 ... Q5SLQ0 17940016
    281053 4v4j:t (3.83) BS01 rna ? GO:0000028 ... Q5SHP2 17940016
    281054 4v4j:u (3.83) BS01 rna ? GO:0003723 ... P80380 17940016
    281055 4v4l:A (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281056 4v4l:B (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281057 4v4l:C (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281058 4v4l:D (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281059 4v4l:E (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281060 4v4l:F (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281061 4v4l:G (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281062 4v4l:H (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281063 4v4l:I (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281064 4v4l:J (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281065 4v4l:K (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281066 4v4l:L (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281067 4v4l:M (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281068 4v4l:N (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281069 4v4l:O (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281070 4v4l:P (6.9) BS01 DTP ? GO:0043531 ... Q7KLI1 21220123
    281071 4v4m:0 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281072 4v4m:1 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281073 4v4m:2 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281074 4v4m:3 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281075 4v4m:4 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281076 4v4m:5 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281077 4v4m:6 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281078 4v4m:7 (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281079 4v4m:A (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281080 4v4m:B (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281081 4v4m:C (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281082 4v4m:D (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281083 4v4m:E (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281084 4v4m:F (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281085 4v4m:G (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281086 4v4m:H (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281087 4v4m:I (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281088 4v4m:J (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281089 4v4m:K (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281090 4v4m:L (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281091 4v4m:M (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281092 4v4m:N (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281093 4v4m:O (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281094 4v4m:P (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281095 4v4m:Q (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281096 4v4m:R (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281097 4v4m:S (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281098 4v4m:T (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281099 4v4m:U (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281100 4v4m:V (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281101 4v4m:W (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281102 4v4m:X (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281103 4v4m:Y (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281104 4v4m:Z (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281105 4v4m:a (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281106 4v4m:b (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281107 4v4m:c (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281108 4v4m:d (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281109 4v4m:e (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281110 4v4m:f (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281111 4v4m:g (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281112 4v4m:h (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281113 4v4m:i (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281114 4v4m:j (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281115 4v4m:k (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281116 4v4m:l (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281117 4v4m:m (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281118 4v4m:n (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281119 4v4m:o (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281120 4v4m:p (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281121 4v4m:q (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281122 4v4m:r (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281123 4v4m:s (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281124 4v4m:t (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281125 4v4m:u (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281126 4v4m:v (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281127 4v4m:w (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281128 4v4m:x (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281129 4v4m:y (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281130 4v4m:z (1.45) BS01 CA ? GO:0003723 ... P03606 21839089
    281131 4v4n:A5 (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281132 4v4n:AA (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281133 4v4n:AB (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281134 4v4n:AC (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281135 4v4n:AD (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281136 4v4n:AE (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281137 4v4n:AE (9.0) BS02 rna N/A GO:0003735 ... N/A 24153188
    281138 4v4n:AF (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281139 4v4n:AG (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281140 4v4n:AH (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281141 4v4n:AI (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281142 4v4n:AJ (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281143 4v4n:AK (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281144 4v4n:AL (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281145 4v4n:AM (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281146 4v4n:AN (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281147 4v4n:AO (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281148 4v4n:AO (9.0) BS02 rna N/A GO:0003735 ... N/A 24153188
    281149 4v4n:AP (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281150 4v4n:AQ (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281151 4v4n:AR (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281152 4v4n:AR (9.0) BS02 rna N/A GO:0003735 ... N/A 24153188
    281153 4v4n:AS (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281154 4v4n:AT (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281155 4v4n:AU (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281156 4v4n:AV (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281157 4v4n:AW (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281158 4v4n:AX (9.0) BS01 rna ? GO:0005048 ... Q60175 24153188
    281159 4v4n:AY (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281160 4v4n:AY (9.0) BS02 rna N/A GO:0003735 ... N/A 24153188
    281161 4v4n:AZ (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281162 4v4n:Aa (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281163 4v4n:Ab (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281164 4v4n:Ad (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281165 4v4n:Ae (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281166 4v4n:Af (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281167 4v4n:Ag (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281168 4v4n:Ai (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281169 4v4n:Aj (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281170 4v4n:Ak (9.0) BS01 rna N/A N/A N/A 24153188
    281171 4v4n:B3 (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281172 4v4n:BA (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281173 4v4n:BB (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281174 4v4n:BC (9.0) BS01 rna N/A GO:0003676 ... N/A 24153188
    281175 4v4n:BD (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281176 4v4n:BE (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281177 4v4n:BF (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281178 4v4n:BG (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281179 4v4n:BH (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281180 4v4n:BI (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281181 4v4n:BJ (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281182 4v4n:BK (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281183 4v4n:BL (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281184 4v4n:BM (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281185 4v4n:BN (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281186 4v4n:BO (9.0) BS01 rna N/A GO:0003676 ... N/A 24153188
    281187 4v4n:BP (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281188 4v4n:BQ (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281189 4v4n:BR (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281190 4v4n:BS (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281191 4v4n:BT (9.0) BS01 rna N/A GO:0003723 ... N/A 24153188
    281192 4v4n:BU (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281193 4v4n:BV (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281194 4v4n:BW (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281195 4v4n:BX (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281196 4v4n:BY (9.0) BS01 rna N/A GO:0003735 ... N/A 24153188
    281197 4v4o:A (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    281198 4v4o:B (2.8) BS01 ADP 5.6.1.7 GO:0005524 ... P61490 15296740
    281199 4v4o:C (2.8) BS01 MG 5.6.1.7 GO:0005524 ... P61490 15296740
    281200 4v4o:C (2.8) BS02 ADP 5.6.1.7 GO:0005524 ... P61490 15296740

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).