SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    281401 4v4r:AH (5.9) BS01 rna ? GO:0003735 ... P0DOY9 16377566
    281402 4v4r:AI (5.9) BS01 rna ? GO:0000049 ... P80374 16377566
    281403 4v4r:AI (5.9) BS02 rna ? GO:0000049 ... P80374 16377566
    281404 4v4r:AJ (5.9) BS01 rna ? GO:0000049 ... Q5SHN7 16377566
    281405 4v4r:AK (5.9) BS01 rna ? GO:0003735 ... P80376 16377566
    281406 4v4r:AL (5.9) BS01 rna ? GO:0000049 ... Q5SHN3 16377566
    281407 4v4r:AM (5.9) BS01 rna ? GO:0000049 ... P80377 16377566
    281408 4v4r:AM (5.9) BS02 rna ? GO:0000049 ... P80377 16377566
    281409 4v4r:AN (5.9) BS01 rna ? GO:0003735 ... P0DOY6 16377566
    281410 4v4r:AO (5.9) BS01 rna ? GO:0003735 ... Q5SJ76 16377566
    281411 4v4r:AP (5.9) BS01 rna ? GO:0003735 ... Q5SJH3 16377566
    281412 4v4r:AQ (5.9) BS01 rna ? GO:0003735 ... P0DOY7 16377566
    281413 4v4r:AR (5.9) BS01 rna ? GO:0003735 ... Q5SLQ0 16377566
    281414 4v4r:AS (5.9) BS01 rna ? GO:0000028 ... Q5SHP2 16377566
    281415 4v4r:AT (5.9) BS01 rna ? GO:0003723 ... P80380 16377566
    281416 4v4r:AY (5.9) BS01 rna ? GO:0003747 ... P96077 16377566
    281417 4v4r:AY (5.9) BS02 rna ? GO:0003747 ... P96077 16377566
    281418 4v4r:AY (5.9) BS03 rna ? GO:0003747 ... P96077 16377566
    281419 4v4r:B0 (5.9) BS01 rna ? GO:0000049 ... Q9RY65 16377566
    281420 4v4r:B0 (5.9) BS02 rna ? GO:0000049 ... Q9RY65 16377566
    281421 4v4r:B2 (5.9) BS01 rna ? GO:0003735 ... P10971 16377566
    281422 4v4r:B3 (5.9) BS01 rna ? GO:0003735 ... Q5SHQ6 16377566
    281423 4v4r:B3 (5.9) BS02 rna ? GO:0003735 ... Q5SHQ6 16377566
    281424 4v4r:B4 (5.9) BS01 rna ? GO:0000049 ... Q9RW44 16377566
    281425 4v4r:B4 (5.9) BS02 rna ? GO:0000049 ... Q9RW44 16377566
    281426 4v4r:B5 (5.9) BS01 rna ? GO:0003735 ... P49228 16377566
    281427 4v4r:B6 (5.9) BS01 rna ? GO:0000049 ... Q9RSS4 16377566
    281428 4v4r:B7 (5.9) BS01 rna ? GO:0003735 ... Q9RSH2 16377566
    281429 4v4r:B8 (5.9) BS01 rna ? GO:0003735 ... Q9RSW6 16377566
    281430 4v4r:B8 (5.9) BS02 rna ? GO:0003735 ... Q9RSW6 16377566
    281431 4v4r:B9 (5.9) BS01 rna ? GO:0003735 ... Q9RSK0 16377566
    281432 4v4r:BD (5.9) BS01 rna ? GO:0003723 ... Q5L3Z4 16377566
    281433 4v4r:BE (5.9) BS01 rna ? GO:0003723 ... P20279 16377566
    281434 4v4r:BF (5.9) BS01 rna ? GO:0003735 ... P12735 16377566
    281435 4v4r:BG (5.9) BS01 rna ? GO:0000049 ... P14124 16377566
    281436 4v4r:BG (5.9) BS02 rna ? GO:0000049 ... P14124 16377566
    281437 4v4r:BH (5.9) BS01 rna ? GO:0002181 ... Q5L408 16377566
    281438 4v4r:BI (5.9) BS01 rna ? GO:0003735 ... P02417 16377566
    281439 4v4r:BK (5.9) BS01 rna ? GO:0003735 ... P29395 16377566
    281440 4v4r:BN (5.9) BS01 rna ? GO:0003729 ... P29198 16377566
    281441 4v4r:BO (5.9) BS01 rna ? GO:0003735 ... Q5L413 16377566
    281442 4v4r:BO (5.9) BS02 rna ? GO:0003735 ... Q5L413 16377566
    281443 4v4r:BP (5.9) BS01 rna ? GO:0003735 ... P12737 16377566
    281444 4v4r:BQ (5.9) BS01 rna N/A GO:0003735 ... N/A 16377566
    281445 4v4r:BQ (5.9) BS02 rna N/A GO:0003735 ... N/A 16377566
    281446 4v4r:BQ (5.9) BS03 rna N/A GO:0003735 ... N/A 16377566
    281447 4v4r:BR (5.9) BS01 rna ? GO:0003735 ... Q9Z9H5 16377566
    281448 4v4r:BS (5.9) BS01 rna ? GO:0000027 ... P14123 16377566
    281449 4v4r:BS (5.9) BS02 rna ? GO:0000027 ... P14123 16377566
    281450 4v4r:BT (5.9) BS01 rna ? GO:0003735 ... P14116 16377566
    281451 4v4r:BT (5.9) BS02 rna ? GO:0003735 ... P14116 16377566
    281452 4v4r:BU (5.9) BS01 rna ? GO:0000027 ... Q9RSW7 16377566
    281453 4v4r:BV (5.9) BS01 rna ? GO:0003723 ... Q9RY64 16377566
    281454 4v4r:BW (5.9) BS01 rna ? GO:0003735 ... Q5SHP3 16377566
    281455 4v4r:BX (5.9) BS01 rna ? GO:0003735 ... P12732 16377566
    281456 4v4r:BY (5.9) BS01 rna ? GO:0003723 ... P10972 16377566
    281457 4v4r:BZ (5.9) BS01 rna ? GO:0000049 ... Q9RX88 16377566
    281458 4v4r:BZ (5.9) BS02 rna ? GO:0000049 ... Q9RX88 16377566
    281459 4v4s:AB (6.76) BS01 rna ? GO:0003735 ... P80371 16377566
    281460 4v4s:AC (6.76) BS01 rna ? GO:0003676 ... P80372 16377566
    281461 4v4s:AD (6.76) BS01 rna ? GO:0003723 ... P80373 16377566
    281462 4v4s:AE (6.76) BS01 rna ? GO:0003723 ... Q5SHQ5 16377566
    281463 4v4s:AF (6.76) BS01 rna ? GO:0003735 ... Q5SLP8 16377566
    281464 4v4s:AG (6.76) BS01 rna ? GO:0000049 ... P17291 16377566
    281465 4v4s:AG (6.76) BS02 rna ? GO:0000049 ... P17291 16377566
    281466 4v4s:AH (6.76) BS01 rna ? GO:0003735 ... P0DOY9 16377566
    281467 4v4s:AI (6.76) BS01 rna ? GO:0000049 ... P80374 16377566
    281468 4v4s:AI (6.76) BS02 rna ? GO:0000049 ... P80374 16377566
    281469 4v4s:AJ (6.76) BS01 rna ? GO:0000049 ... Q5SHN7 16377566
    281470 4v4s:AK (6.76) BS01 rna ? GO:0003735 ... P80376 16377566
    281471 4v4s:AL (6.76) BS01 rna ? GO:0000049 ... Q5SHN3 16377566
    281472 4v4s:AM (6.76) BS01 rna ? GO:0000049 ... P80377 16377566
    281473 4v4s:AM (6.76) BS02 rna ? GO:0000049 ... P80377 16377566
    281474 4v4s:AN (6.76) BS01 rna ? GO:0003735 ... P0DOY6 16377566
    281475 4v4s:AO (6.76) BS01 rna ? GO:0003735 ... Q5SJ76 16377566
    281476 4v4s:AP (6.76) BS01 rna ? GO:0003735 ... Q5SJH3 16377566
    281477 4v4s:AQ (6.76) BS01 rna ? GO:0003735 ... P0DOY7 16377566
    281478 4v4s:AR (6.76) BS01 rna ? GO:0003735 ... Q5SLQ0 16377566
    281479 4v4s:AS (6.76) BS01 rna ? GO:0000028 ... Q5SHP2 16377566
    281480 4v4s:AT (6.76) BS01 rna ? GO:0003723 ... P80380 16377566
    281481 4v4s:AY (6.76) BS01 rna ? GO:0000049 ... Q5SM01 16377566
    281482 4v4s:AY (6.76) BS02 rna ? GO:0000049 ... Q5SM01 16377566
    281483 4v4s:B0 (6.76) BS01 rna ? GO:0000049 ... Q9RY65 16377566
    281484 4v4s:B0 (6.76) BS02 rna ? GO:0000049 ... Q9RY65 16377566
    281485 4v4s:B2 (6.76) BS01 rna ? GO:0003735 ... P10971 16377566
    281486 4v4s:B3 (6.76) BS01 rna ? GO:0003735 ... Q5SHQ6 16377566
    281487 4v4s:B3 (6.76) BS02 rna ? GO:0003735 ... Q5SHQ6 16377566
    281488 4v4s:B4 (6.76) BS01 rna ? GO:0000049 ... Q9RW44 16377566
    281489 4v4s:B4 (6.76) BS02 rna ? GO:0000049 ... Q9RW44 16377566
    281490 4v4s:B5 (6.76) BS01 rna ? GO:0003735 ... P49228 16377566
    281491 4v4s:B6 (6.76) BS01 rna ? GO:0000049 ... Q9RSS4 16377566
    281492 4v4s:B7 (6.76) BS01 rna ? GO:0003735 ... Q9RSH2 16377566
    281493 4v4s:B8 (6.76) BS01 rna ? GO:0003735 ... Q9RSW6 16377566
    281494 4v4s:B9 (6.76) BS01 rna ? GO:0003735 ... Q9RSK0 16377566
    281495 4v4s:BD (6.76) BS01 rna ? GO:0003723 ... Q5L3Z4 16377566
    281496 4v4s:BE (6.76) BS01 rna ? GO:0003723 ... P20279 16377566
    281497 4v4s:BF (6.76) BS01 rna ? GO:0003735 ... P12735 16377566
    281498 4v4s:BG (6.76) BS01 rna ? GO:0000049 ... P14124 16377566
    281499 4v4s:BG (6.76) BS02 rna ? GO:0000049 ... P14124 16377566
    281500 4v4s:BG (6.76) BS03 rna ? GO:0000049 ... P14124 16377566
    281501 4v4s:BH (6.76) BS01 rna ? GO:0002181 ... Q5L408 16377566
    281502 4v4s:BI (6.76) BS01 rna ? GO:0003735 ... P02417 16377566
    281503 4v4s:BK (6.76) BS01 rna ? GO:0003735 ... P29395 16377566
    281504 4v4s:BN (6.76) BS01 rna ? GO:0003729 ... P29198 16377566
    281505 4v4s:BO (6.76) BS01 rna ? GO:0003735 ... Q5L413 16377566
    281506 4v4s:BO (6.76) BS02 rna ? GO:0003735 ... Q5L413 16377566
    281507 4v4s:BP (6.76) BS01 rna ? GO:0003735 ... P12737 16377566
    281508 4v4s:BQ (6.76) BS01 rna N/A GO:0003735 ... N/A 16377566
    281509 4v4s:BQ (6.76) BS02 rna N/A GO:0003735 ... N/A 16377566
    281510 4v4s:BR (6.76) BS01 rna ? GO:0003735 ... Q9Z9H5 16377566
    281511 4v4s:BS (6.76) BS01 rna ? GO:0000027 ... P14123 16377566
    281512 4v4s:BS (6.76) BS02 rna ? GO:0000027 ... P14123 16377566
    281513 4v4s:BT (6.76) BS01 rna ? GO:0003735 ... P14116 16377566
    281514 4v4s:BU (6.76) BS01 rna ? GO:0000027 ... Q9RSW7 16377566
    281515 4v4s:BV (6.76) BS01 rna ? GO:0003723 ... Q9RY64 16377566
    281516 4v4s:BW (6.76) BS01 rna ? GO:0003735 ... Q5SHP3 16377566
    281517 4v4s:BX (6.76) BS01 rna ? GO:0003735 ... P12732 16377566
    281518 4v4s:BY (6.76) BS01 rna ? GO:0003723 ... P10972 16377566
    281519 4v4s:BZ (6.76) BS01 rna ? GO:0000049 ... Q9RX88 16377566
    281520 4v4s:BZ (6.76) BS02 rna ? GO:0000049 ... Q9RX88 16377566
    281521 4v4t:AB (6.46) BS01 rna ? GO:0003735 ... P80371 16377566
    281522 4v4t:AC (6.46) BS01 rna ? GO:0003676 ... P80372 16377566
    281523 4v4t:AD (6.46) BS01 rna ? GO:0003723 ... P80373 16377566
    281524 4v4t:AE (6.46) BS01 rna ? GO:0003723 ... Q5SHQ5 16377566
    281525 4v4t:AF (6.46) BS01 rna ? GO:0003735 ... Q5SLP8 16377566
    281526 4v4t:AG (6.46) BS01 rna ? GO:0000049 ... P17291 16377566
    281527 4v4t:AG (6.46) BS02 rna ? GO:0000049 ... P17291 16377566
    281528 4v4t:AH (6.46) BS01 rna ? GO:0003735 ... P0DOY9 16377566
    281529 4v4t:AI (6.46) BS01 rna ? GO:0000049 ... P80374 16377566
    281530 4v4t:AI (6.46) BS02 rna ? GO:0000049 ... P80374 16377566
    281531 4v4t:AJ (6.46) BS01 rna ? GO:0000049 ... Q5SHN7 16377566
    281532 4v4t:AK (6.46) BS01 rna ? GO:0003735 ... P80376 16377566
    281533 4v4t:AL (6.46) BS01 rna ? GO:0000049 ... Q5SHN3 16377566
    281534 4v4t:AM (6.46) BS01 rna ? GO:0000049 ... P80377 16377566
    281535 4v4t:AM (6.46) BS02 rna ? GO:0000049 ... P80377 16377566
    281536 4v4t:AM (6.46) BS03 rna ? GO:0000049 ... P80377 16377566
    281537 4v4t:AN (6.46) BS01 rna ? GO:0003735 ... P0DOY6 16377566
    281538 4v4t:AO (6.46) BS01 rna ? GO:0003735 ... Q5SJ76 16377566
    281539 4v4t:AO (6.46) BS02 rna ? GO:0003735 ... Q5SJ76 16377566
    281540 4v4t:AP (6.46) BS01 rna ? GO:0003735 ... Q5SJH3 16377566
    281541 4v4t:AQ (6.46) BS01 rna ? GO:0003735 ... P0DOY7 16377566
    281542 4v4t:AR (6.46) BS01 rna ? GO:0003735 ... Q5SLQ0 16377566
    281543 4v4t:AS (6.46) BS01 rna ? GO:0000028 ... Q5SHP2 16377566
    281544 4v4t:AT (6.46) BS01 rna ? GO:0003723 ... P80380 16377566
    281545 4v4t:B0 (6.46) BS01 rna ? GO:0000049 ... Q9RY65 16377566
    281546 4v4t:B0 (6.46) BS02 rna ? GO:0000049 ... Q9RY65 16377566
    281547 4v4t:B2 (6.46) BS01 rna ? GO:0003735 ... P10971 16377566
    281548 4v4t:B3 (6.46) BS01 rna ? GO:0003735 ... Q5SHQ6 16377566
    281549 4v4t:B3 (6.46) BS02 rna ? GO:0003735 ... Q5SHQ6 16377566
    281550 4v4t:B4 (6.46) BS01 rna ? GO:0000049 ... Q9RW44 16377566
    281551 4v4t:B4 (6.46) BS02 rna ? GO:0000049 ... Q9RW44 16377566
    281552 4v4t:B5 (6.46) BS01 rna ? GO:0003735 ... P49228 16377566
    281553 4v4t:B6 (6.46) BS01 rna ? GO:0000049 ... Q9RSS4 16377566
    281554 4v4t:B7 (6.46) BS01 rna ? GO:0003735 ... Q9RSH2 16377566
    281555 4v4t:B8 (6.46) BS01 rna ? GO:0003735 ... Q9RSW6 16377566
    281556 4v4t:B9 (6.46) BS01 rna ? GO:0003735 ... Q9RSK0 16377566
    281557 4v4t:BD (6.46) BS01 rna ? GO:0003723 ... Q5L3Z4 16377566
    281558 4v4t:BE (6.46) BS01 rna ? GO:0003723 ... P20279 16377566
    281559 4v4t:BF (6.46) BS01 rna ? GO:0003735 ... P12735 16377566
    281560 4v4t:BG (6.46) BS01 rna ? GO:0000049 ... P14124 16377566
    281561 4v4t:BG (6.46) BS02 rna ? GO:0000049 ... P14124 16377566
    281562 4v4t:BG (6.46) BS03 rna ? GO:0000049 ... P14124 16377566
    281563 4v4t:BH (6.46) BS01 rna ? GO:0002181 ... Q5L408 16377566
    281564 4v4t:BI (6.46) BS01 rna ? GO:0003735 ... P02417 16377566
    281565 4v4t:BK (6.46) BS01 rna ? GO:0003735 ... P29395 16377566
    281566 4v4t:BN (6.46) BS01 rna ? GO:0003729 ... P29198 16377566
    281567 4v4t:BO (6.46) BS01 rna ? GO:0003735 ... Q5L413 16377566
    281568 4v4t:BO (6.46) BS02 rna ? GO:0003735 ... Q5L413 16377566
    281569 4v4t:BP (6.46) BS01 rna ? GO:0003735 ... P12737 16377566
    281570 4v4t:BQ (6.46) BS01 rna N/A GO:0003735 ... N/A 16377566
    281571 4v4t:BQ (6.46) BS02 rna N/A GO:0003735 ... N/A 16377566
    281572 4v4t:BQ (6.46) BS03 rna N/A GO:0003735 ... N/A 16377566
    281573 4v4t:BR (6.46) BS01 rna ? GO:0003735 ... Q9Z9H5 16377566
    281574 4v4t:BS (6.46) BS01 rna ? GO:0000027 ... P14123 16377566
    281575 4v4t:BS (6.46) BS02 rna ? GO:0000027 ... P14123 16377566
    281576 4v4t:BT (6.46) BS01 rna ? GO:0003735 ... P14116 16377566
    281577 4v4t:BT (6.46) BS02 rna ? GO:0003735 ... P14116 16377566
    281578 4v4t:BU (6.46) BS01 rna ? GO:0000027 ... Q9RSW7 16377566
    281579 4v4t:BV (6.46) BS01 rna ? GO:0003723 ... Q9RY64 16377566
    281580 4v4t:BW (6.46) BS01 rna ? GO:0003735 ... Q5SHP3 16377566
    281581 4v4t:BX (6.46) BS01 rna ? GO:0003735 ... P12732 16377566
    281582 4v4t:BY (6.46) BS01 rna ? GO:0003723 ... P10972 16377566
    281583 4v4t:BZ (6.46) BS01 rna ? GO:0000049 ... Q9RX88 16377566
    281584 4v4t:BZ (6.46) BS02 rna ? GO:0000049 ... Q9RX88 16377566
    281585 4v4u:A (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    281586 4v4u:A (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    281587 4v4u:B (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    281588 4v4u:B (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    281589 4v4u:C (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    281590 4v4u:C (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    281591 4v4u:D (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    281592 4v4u:D (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    281593 4v4u:E (10.0) BS01 peptide ? GO:0005198 ... P03276 15861131
    281594 4v4u:E (10.0) BS02 peptide ? GO:0005198 ... P03276 15861131
    281595 4v4v:AB (15.0) BS01 rna ? GO:0000028 ... P0A7V0 16713583
    281596 4v4v:AC (15.0) BS01 rna ? GO:0003676 ... P0A7V3 16713583
    281597 4v4v:AD (15.0) BS01 rna ? GO:0000028 ... P0A7V8 16713583
    281598 4v4v:AE (15.0) BS01 rna ? GO:0003723 ... P0A7W1 16713583
    281599 4v4v:AG (15.0) BS01 rna ? GO:0003723 ... P02359 16713583
    281600 4v4v:AG (15.0) BS02 rna ? GO:0003723 ... P02359 16713583

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).