SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    282001 4v50:DX (3.22) BS01 rna ? GO:0000027 ... P0A7M2 17038497
    282002 4v50:DY (3.22) BS01 rna ? GO:0000027 ... P0A7M6 17038497
    282003 4v50:DZ (3.22) BS01 rna ? GO:0000027 ... P0AG51 17038497
    282004 4v50:DZ (3.22) BS02 rna ? GO:0000027 ... P0AG51 17038497
    282005 4v51:AB (2.8) BS01 rna ? GO:0003735 ... P80371 16959973
    282006 4v51:AC (2.8) BS01 rna ? GO:0003676 ... P80372 16959973
    282007 4v51:AD (2.8) BS01 rna ? GO:0003723 ... P80373 16959973
    282008 4v51:AD (2.8) BS02 ZN ? GO:0003723 ... P80373 16959973
    282009 4v51:AE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 16959973
    282010 4v51:AF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 16959973
    282011 4v51:AG (2.8) BS01 rna ? GO:0000049 ... P17291 16959973
    282012 4v51:AG (2.8) BS02 rna ? GO:0000049 ... P17291 16959973
    282013 4v51:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    282014 4v51:AI (2.8) BS01 rna ? GO:0000049 ... P62669 16959973
    282015 4v51:AJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 16959973
    282016 4v51:AJ (2.8) BS02 rna ? GO:0000049 ... Q5SHN7 16959973
    282017 4v51:AK (2.8) BS01 rna ? GO:0003735 ... P80376 16959973
    282018 4v51:AL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 16959973
    282019 4v51:AM (2.8) BS01 rna ? GO:0000049 ... P80377 16959973
    282020 4v51:AM (2.8) BS02 rna ? GO:0000049 ... P80377 16959973
    282021 4v51:AN (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    282022 4v51:AN (2.8) BS02 ZN N/A GO:0003735 ... N/A 16959973
    282023 4v51:AO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 16959973
    282024 4v51:AO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 16959973
    282025 4v51:AP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 16959973
    282026 4v51:AQ (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    282027 4v51:AR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 16959973
    282028 4v51:AS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 16959973
    282029 4v51:AT (2.8) BS01 rna ? GO:0003723 ... P80380 16959973
    282030 4v51:B0 (2.8) BS01 rna ? GO:0003735 ... P60493 16959973
    282031 4v51:B0 (2.8) BS02 rna ? GO:0003735 ... P60493 16959973
    282032 4v51:B0 (2.8) BS03 rna ? GO:0003735 ... P60493 16959973
    282033 4v51:B1 (2.8) BS01 rna ? GO:0003735 ... P60494 16959973
    282034 4v51:B1 (2.8) BS02 MG ? GO:0003735 ... P60494 16959973
    282035 4v51:B2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 16959973
    282036 4v51:B2 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 16959973
    282037 4v51:B3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 16959973
    282038 4v51:B3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 16959973
    282039 4v51:B4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 16959973
    282040 4v51:B5 (2.8) BS01 rna ? GO:0003735 ... P80339 16959973
    282041 4v51:B6 (2.8) BS01 rna ? GO:0000049 ... P35871 16959973
    282042 4v51:B7 (2.8) BS01 rna ? GO:0003735 ... P80340 16959973
    282043 4v51:B8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 16959973
    282044 4v51:BC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 16959973
    282045 4v51:BD (2.8) BS01 rna ? GO:0002181 ... P60405 16959973
    282046 4v51:BD (2.8) BS02 rna ? GO:0002181 ... P60405 16959973
    282047 4v51:BD (2.8) BS03 MG ? GO:0002181 ... P60405 16959973
    282048 4v51:BE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 16959973
    282049 4v51:BF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 16959973
    282050 4v51:BF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 16959973
    282051 4v51:BG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 16959973
    282052 4v51:BG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 16959973
    282053 4v51:BG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 16959973
    282054 4v51:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    282055 4v51:BI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 16959973
    282056 4v51:BN (2.8) BS01 rna ? GO:0003729 ... P60488 16959973
    282057 4v51:BO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 16959973
    282058 4v51:BO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 16959973
    282059 4v51:BP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 16959973
    282060 4v51:BQ (2.8) BS01 rna ? GO:0000049 ... P60489 16959973
    282061 4v51:BR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 16959973
    282062 4v51:BS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 16959973
    282063 4v51:BS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 16959973
    282064 4v51:BT (2.8) BS01 rna ? GO:0003735 ... P60490 16959973
    282065 4v51:BT (2.8) BS02 rna ? GO:0003735 ... P60490 16959973
    282066 4v51:BU (2.8) BS01 rna ? GO:0000027 ... P60491 16959973
    282067 4v51:BV (2.8) BS01 rna ? GO:0003723 ... P60492 16959973
    282068 4v51:BW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 16959973
    282069 4v51:BX (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 16959973
    282070 4v51:BY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 16959973
    282071 4v51:BZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 16959973
    282072 4v51:BZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 16959973
    282073 4v51:CB (2.8) BS01 rna ? GO:0003735 ... P80371 16959973
    282074 4v51:CC (2.8) BS01 rna ? GO:0003676 ... P80372 16959973
    282075 4v51:CD (2.8) BS01 rna ? GO:0003723 ... P80373 16959973
    282076 4v51:CD (2.8) BS02 ZN ? GO:0003723 ... P80373 16959973
    282077 4v51:CE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 16959973
    282078 4v51:CF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 16959973
    282079 4v51:CF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 16959973
    282080 4v51:CG (2.8) BS01 rna ? GO:0000049 ... P17291 16959973
    282081 4v51:CG (2.8) BS02 rna ? GO:0000049 ... P17291 16959973
    282082 4v51:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    282083 4v51:CI (2.8) BS01 rna ? GO:0000049 ... P62669 16959973
    282084 4v51:CJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 16959973
    282085 4v51:CK (2.8) BS01 rna ? GO:0003735 ... P80376 16959973
    282086 4v51:CL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 16959973
    282087 4v51:CM (2.8) BS01 rna ? GO:0000049 ... P80377 16959973
    282088 4v51:CN (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    282089 4v51:CN (2.8) BS02 ZN N/A GO:0003735 ... N/A 16959973
    282090 4v51:CO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 16959973
    282091 4v51:CO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 16959973
    282092 4v51:CP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 16959973
    282093 4v51:CQ (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    282094 4v51:CR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 16959973
    282095 4v51:CS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 16959973
    282096 4v51:CT (2.8) BS01 rna ? GO:0003723 ... P80380 16959973
    282097 4v51:D0 (2.8) BS01 rna ? GO:0003735 ... P60493 16959973
    282098 4v51:D0 (2.8) BS02 rna ? GO:0003735 ... P60493 16959973
    282099 4v51:D0 (2.8) BS03 rna ? GO:0003735 ... P60493 16959973
    282100 4v51:D1 (2.8) BS01 rna ? GO:0003735 ... P60494 16959973
    282101 4v51:D1 (2.8) BS02 rna ? GO:0003735 ... P60494 16959973
    282102 4v51:D2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 16959973
    282103 4v51:D3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 16959973
    282104 4v51:D3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 16959973
    282105 4v51:D5 (2.8) BS01 rna ? GO:0003735 ... P80339 16959973
    282106 4v51:D6 (2.8) BS01 rna ? GO:0000049 ... P35871 16959973
    282107 4v51:D7 (2.8) BS01 rna ? GO:0003735 ... P80340 16959973
    282108 4v51:D8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 16959973
    282109 4v51:DC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 16959973
    282110 4v51:DD (2.8) BS01 rna ? GO:0002181 ... P60405 16959973
    282111 4v51:DD (2.8) BS02 MG ? GO:0002181 ... P60405 16959973
    282112 4v51:DE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 16959973
    282113 4v51:DF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 16959973
    282114 4v51:DF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 16959973
    282115 4v51:DG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 16959973
    282116 4v51:DG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 16959973
    282117 4v51:DG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 16959973
    282118 4v51:DH (2.8) BS01 rna N/A GO:0003735 ... N/A 16959973
    282119 4v51:DI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 16959973
    282120 4v51:DI (2.8) BS02 rna ? GO:0003735 ... Q5SLQ1 16959973
    282121 4v51:DN (2.8) BS01 rna ? GO:0003729 ... P60488 16959973
    282122 4v51:DO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 16959973
    282123 4v51:DO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 16959973
    282124 4v51:DP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 16959973
    282125 4v51:DQ (2.8) BS01 rna ? GO:0000049 ... P60489 16959973
    282126 4v51:DR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 16959973
    282127 4v51:DR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 16959973
    282128 4v51:DS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 16959973
    282129 4v51:DS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 16959973
    282130 4v51:DS (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 16959973
    282131 4v51:DT (2.8) BS01 rna ? GO:0003735 ... P60490 16959973
    282132 4v51:DT (2.8) BS02 rna ? GO:0003735 ... P60490 16959973
    282133 4v51:DU (2.8) BS01 rna ? GO:0000027 ... P60491 16959973
    282134 4v51:DV (2.8) BS01 rna ? GO:0003723 ... P60492 16959973
    282135 4v51:DW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 16959973
    282136 4v51:DX (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 16959973
    282137 4v51:DY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 16959973
    282138 4v51:DZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 16959973
    282139 4v52:AB (3.21) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    282140 4v52:AC (3.21) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    282141 4v52:AD (3.21) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    282142 4v52:AE (3.21) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    282143 4v52:AF (3.21) BS01 rna ? GO:0002181 ... P02358 17660832
    282144 4v52:AG (3.21) BS01 rna ? GO:0000028 ... P02359 17660832
    282145 4v52:AH (3.21) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    282146 4v52:AI (3.21) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    282147 4v52:AJ (3.21) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    282148 4v52:AK (3.21) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    282149 4v52:AL (3.21) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    282150 4v52:AM (3.21) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    282151 4v52:AN (3.21) BS01 rna ? GO:0000028 ... P0AG59 17660832
    282152 4v52:AO (3.21) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    282153 4v52:AO (3.21) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    282154 4v52:AP (3.21) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    282155 4v52:AQ (3.21) BS01 rna ? GO:0000028 ... P0AG63 17660832
    282156 4v52:AR (3.21) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    282157 4v52:AS (3.21) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    282158 4v52:AT (3.21) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    282159 4v52:AU (3.21) BS01 rna ? GO:0000028 ... P68679 17660832
    282160 4v52:B0 (3.21) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    282161 4v52:B1 (3.21) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    282162 4v52:B2 (3.21) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    282163 4v52:B3 (3.21) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    282164 4v52:B4 (3.21) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    282165 4v52:B4 (3.21) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    282166 4v52:BC (3.21) BS01 rna ? GO:0000027 ... P60422 17660832
    282167 4v52:BD (3.21) BS01 rna ? GO:0000027 ... P60438 17660832
    282168 4v52:BE (3.21) BS01 rna ? GO:0001070 ... P60723 17660832
    282169 4v52:BF (3.21) BS01 rna ? GO:0000027 ... P62399 17660832
    282170 4v52:BF (3.21) BS02 rna ? GO:0000027 ... P62399 17660832
    282171 4v52:BG (3.21) BS01 rna ? GO:0000027 ... P0AG55 17660832
    282172 4v52:BH (3.21) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    282173 4v52:BH (3.21) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    282174 4v52:BI (3.21) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    282175 4v52:BJ (3.21) BS01 rna ? GO:0002181 ... P0AA10 17660832
    282176 4v52:BK (3.21) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    282177 4v52:BK (3.21) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    282178 4v52:BL (3.21) BS01 rna ? GO:0002181 ... P02413 17660832
    282179 4v52:BM (3.21) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    282180 4v52:BM (3.21) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    282181 4v52:BN (3.21) BS01 rna ? GO:0000027 ... P0AG44 17660832
    282182 4v52:BO (3.21) BS01 rna ? GO:0002181 ... P0C018 17660832
    282183 4v52:BO (3.21) BS02 rna ? GO:0002181 ... P0C018 17660832
    282184 4v52:BP (3.21) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    282185 4v52:BP (3.21) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    282186 4v52:BQ (3.21) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    282187 4v52:BR (3.21) BS01 rna ? GO:0002181 ... P0AG48 17660832
    282188 4v52:BS (3.21) BS01 rna ? GO:0002181 ... P61175 17660832
    282189 4v52:BT (3.21) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    282190 4v52:BU (3.21) BS01 rna ? GO:0000027 ... P60624 17660832
    282191 4v52:BV (3.21) BS01 rna ? GO:0000027 ... P68919 17660832
    282192 4v52:BV (3.21) BS02 rna ? GO:0000027 ... P68919 17660832
    282193 4v52:BW (3.21) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    282194 4v52:BW (3.21) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    282195 4v52:BX (3.21) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    282196 4v52:BY (3.21) BS01 rna ? GO:0000027 ... P0AG51 17660832
    282197 4v52:BY (3.21) BS02 rna ? GO:0000027 ... P0AG51 17660832
    282198 4v52:BZ (3.21) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    282199 4v52:CB (3.21) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    282200 4v52:CC (3.21) BS01 rna ? GO:0000028 ... P0A7V3 17660832

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).