SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    282201 4v52:CD (3.21) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    282202 4v52:CE (3.21) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    282203 4v52:CF (3.21) BS01 rna ? GO:0002181 ... P02358 17660832
    282204 4v52:CG (3.21) BS01 rna ? GO:0000028 ... P02359 17660832
    282205 4v52:CH (3.21) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    282206 4v52:CI (3.21) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    282207 4v52:CJ (3.21) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    282208 4v52:CJ (3.21) BS02 rna ? GO:0000049 ... P0A7R5 17660832
    282209 4v52:CK (3.21) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    282210 4v52:CL (3.21) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    282211 4v52:CM (3.21) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    282212 4v52:CN (3.21) BS01 rna ? GO:0000028 ... P0AG59 17660832
    282213 4v52:CO (3.21) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    282214 4v52:CO (3.21) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    282215 4v52:CP (3.21) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    282216 4v52:CQ (3.21) BS01 rna ? GO:0000028 ... P0AG63 17660832
    282217 4v52:CR (3.21) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    282218 4v52:CS (3.21) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    282219 4v52:CT (3.21) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    282220 4v52:CU (3.21) BS01 rna ? GO:0000028 ... P68679 17660832
    282221 4v52:D0 (3.21) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    282222 4v52:D1 (3.21) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    282223 4v52:D2 (3.21) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    282224 4v52:D3 (3.21) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    282225 4v52:D4 (3.21) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    282226 4v52:D4 (3.21) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    282227 4v52:DC (3.21) BS01 rna ? GO:0000027 ... P60422 17660832
    282228 4v52:DD (3.21) BS01 rna ? GO:0000027 ... P60438 17660832
    282229 4v52:DE (3.21) BS01 rna ? GO:0001070 ... P60723 17660832
    282230 4v52:DF (3.21) BS01 rna ? GO:0000027 ... P62399 17660832
    282231 4v52:DF (3.21) BS02 rna ? GO:0000027 ... P62399 17660832
    282232 4v52:DG (3.21) BS01 rna ? GO:0000027 ... P0AG55 17660832
    282233 4v52:DH (3.21) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    282234 4v52:DI (3.21) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    282235 4v52:DJ (3.21) BS01 rna ? GO:0002181 ... P0AA10 17660832
    282236 4v52:DK (3.21) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    282237 4v52:DK (3.21) BS02 rna ? GO:0002181 ... P0ADY3 17660832
    282238 4v52:DL (3.21) BS01 rna ? GO:0002181 ... P02413 17660832
    282239 4v52:DM (3.21) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    282240 4v52:DM (3.21) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    282241 4v52:DN (3.21) BS01 rna ? GO:0000027 ... P0AG44 17660832
    282242 4v52:DO (3.21) BS01 rna ? GO:0002181 ... P0C018 17660832
    282243 4v52:DO (3.21) BS02 rna ? GO:0002181 ... P0C018 17660832
    282244 4v52:DP (3.21) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    282245 4v52:DP (3.21) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    282246 4v52:DQ (3.21) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    282247 4v52:DR (3.21) BS01 rna ? GO:0002181 ... P0AG48 17660832
    282248 4v52:DS (3.21) BS01 rna ? GO:0002181 ... P61175 17660832
    282249 4v52:DT (3.21) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    282250 4v52:DU (3.21) BS01 rna ? GO:0000027 ... P60624 17660832
    282251 4v52:DV (3.21) BS01 rna ? GO:0000027 ... P68919 17660832
    282252 4v52:DW (3.21) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    282253 4v52:DW (3.21) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    282254 4v52:DX (3.21) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    282255 4v52:DY (3.21) BS01 rna ? GO:0000027 ... P0AG51 17660832
    282256 4v52:DY (3.21) BS02 rna ? GO:0000027 ... P0AG51 17660832
    282257 4v52:DZ (3.21) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    282258 4v53:AB (3.54) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    282259 4v53:AC (3.54) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    282260 4v53:AD (3.54) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    282261 4v53:AE (3.54) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    282262 4v53:AF (3.54) BS01 rna ? GO:0002181 ... P02358 17660832
    282263 4v53:AG (3.54) BS01 rna ? GO:0000028 ... P02359 17660832
    282264 4v53:AH (3.54) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    282265 4v53:AI (3.54) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    282266 4v53:AJ (3.54) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    282267 4v53:AK (3.54) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    282268 4v53:AL (3.54) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    282269 4v53:AM (3.54) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    282270 4v53:AN (3.54) BS01 rna ? GO:0000028 ... P0AG59 17660832
    282271 4v53:AO (3.54) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    282272 4v53:AO (3.54) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    282273 4v53:AP (3.54) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    282274 4v53:AQ (3.54) BS01 rna ? GO:0000028 ... P0AG63 17660832
    282275 4v53:AR (3.54) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    282276 4v53:AS (3.54) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    282277 4v53:AT (3.54) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    282278 4v53:AU (3.54) BS01 rna ? GO:0000028 ... P68679 17660832
    282279 4v53:B0 (3.54) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    282280 4v53:B1 (3.54) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    282281 4v53:B2 (3.54) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    282282 4v53:B3 (3.54) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    282283 4v53:B4 (3.54) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    282284 4v53:B4 (3.54) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    282285 4v53:BC (3.54) BS01 rna ? GO:0000027 ... P60422 17660832
    282286 4v53:BC (3.54) BS02 rna ? GO:0000027 ... P60422 17660832
    282287 4v53:BD (3.54) BS01 rna ? GO:0000027 ... P60438 17660832
    282288 4v53:BE (3.54) BS01 rna ? GO:0001070 ... P60723 17660832
    282289 4v53:BF (3.54) BS01 rna ? GO:0000027 ... P62399 17660832
    282290 4v53:BF (3.54) BS02 rna ? GO:0000027 ... P62399 17660832
    282291 4v53:BG (3.54) BS01 rna ? GO:0000027 ... P0AG55 17660832
    282292 4v53:BH (3.54) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    282293 4v53:BH (3.54) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    282294 4v53:BI (3.54) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    282295 4v53:BJ (3.54) BS01 rna ? GO:0002181 ... P0AA10 17660832
    282296 4v53:BK (3.54) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    282297 4v53:BL (3.54) BS01 rna ? GO:0002181 ... P02413 17660832
    282298 4v53:BM (3.54) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    282299 4v53:BM (3.54) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    282300 4v53:BN (3.54) BS01 rna ? GO:0000027 ... P0AG44 17660832
    282301 4v53:BO (3.54) BS01 rna ? GO:0002181 ... P0C018 17660832
    282302 4v53:BO (3.54) BS02 rna ? GO:0002181 ... P0C018 17660832
    282303 4v53:BP (3.54) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    282304 4v53:BP (3.54) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    282305 4v53:BQ (3.54) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    282306 4v53:BR (3.54) BS01 rna ? GO:0002181 ... P0AG48 17660832
    282307 4v53:BS (3.54) BS01 rna ? GO:0002181 ... P61175 17660832
    282308 4v53:BT (3.54) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    282309 4v53:BU (3.54) BS01 rna ? GO:0000027 ... P60624 17660832
    282310 4v53:BV (3.54) BS01 rna ? GO:0000027 ... P68919 17660832
    282311 4v53:BV (3.54) BS02 rna ? GO:0000027 ... P68919 17660832
    282312 4v53:BW (3.54) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    282313 4v53:BW (3.54) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    282314 4v53:BX (3.54) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    282315 4v53:BY (3.54) BS01 rna ? GO:0000027 ... P0AG51 17660832
    282316 4v53:BY (3.54) BS02 rna ? GO:0000027 ... P0AG51 17660832
    282317 4v53:BZ (3.54) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    282318 4v53:CB (3.54) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    282319 4v53:CC (3.54) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    282320 4v53:CD (3.54) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    282321 4v53:CE (3.54) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    282322 4v53:CF (3.54) BS01 rna ? GO:0002181 ... P02358 17660832
    282323 4v53:CG (3.54) BS01 rna ? GO:0000028 ... P02359 17660832
    282324 4v53:CH (3.54) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    282325 4v53:CI (3.54) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    282326 4v53:CJ (3.54) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    282327 4v53:CJ (3.54) BS02 rna ? GO:0000049 ... P0A7R5 17660832
    282328 4v53:CK (3.54) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    282329 4v53:CL (3.54) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    282330 4v53:CM (3.54) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    282331 4v53:CN (3.54) BS01 rna ? GO:0000028 ... P0AG59 17660832
    282332 4v53:CO (3.54) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    282333 4v53:CO (3.54) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    282334 4v53:CP (3.54) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    282335 4v53:CQ (3.54) BS01 rna ? GO:0000028 ... P0AG63 17660832
    282336 4v53:CR (3.54) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    282337 4v53:CS (3.54) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    282338 4v53:CT (3.54) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    282339 4v53:CU (3.54) BS01 rna ? GO:0000028 ... P68679 17660832
    282340 4v53:D0 (3.54) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    282341 4v53:D1 (3.54) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    282342 4v53:D2 (3.54) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    282343 4v53:D3 (3.54) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    282344 4v53:D4 (3.54) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    282345 4v53:D4 (3.54) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    282346 4v53:DC (3.54) BS01 rna ? GO:0000027 ... P60422 17660832
    282347 4v53:DD (3.54) BS01 rna ? GO:0000027 ... P60438 17660832
    282348 4v53:DE (3.54) BS01 rna ? GO:0001070 ... P60723 17660832
    282349 4v53:DF (3.54) BS01 rna ? GO:0000027 ... P62399 17660832
    282350 4v53:DF (3.54) BS02 rna ? GO:0000027 ... P62399 17660832
    282351 4v53:DG (3.54) BS01 rna ? GO:0000027 ... P0AG55 17660832
    282352 4v53:DH (3.54) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    282353 4v53:DI (3.54) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    282354 4v53:DJ (3.54) BS01 rna ? GO:0002181 ... P0AA10 17660832
    282355 4v53:DK (3.54) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    282356 4v53:DL (3.54) BS01 rna ? GO:0002181 ... P02413 17660832
    282357 4v53:DM (3.54) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    282358 4v53:DM (3.54) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    282359 4v53:DN (3.54) BS01 rna ? GO:0000027 ... P0AG44 17660832
    282360 4v53:DO (3.54) BS01 rna ? GO:0002181 ... P0C018 17660832
    282361 4v53:DO (3.54) BS02 rna ? GO:0002181 ... P0C018 17660832
    282362 4v53:DP (3.54) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    282363 4v53:DP (3.54) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    282364 4v53:DQ (3.54) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    282365 4v53:DR (3.54) BS01 rna ? GO:0002181 ... P0AG48 17660832
    282366 4v53:DS (3.54) BS01 rna ? GO:0002181 ... P61175 17660832
    282367 4v53:DT (3.54) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    282368 4v53:DU (3.54) BS01 rna ? GO:0000027 ... P60624 17660832
    282369 4v53:DV (3.54) BS01 rna ? GO:0000027 ... P68919 17660832
    282370 4v53:DW (3.54) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    282371 4v53:DW (3.54) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    282372 4v53:DX (3.54) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    282373 4v53:DY (3.54) BS01 rna ? GO:0000027 ... P0AG51 17660832
    282374 4v53:DY (3.54) BS02 rna ? GO:0000027 ... P0AG51 17660832
    282375 4v53:DZ (3.54) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    282376 4v54:AB (3.3) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    282377 4v54:AC (3.3) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    282378 4v54:AD (3.3) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    282379 4v54:AE (3.3) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    282380 4v54:AF (3.3) BS01 rna ? GO:0002181 ... P02358 17660832
    282381 4v54:AG (3.3) BS01 rna ? GO:0000028 ... P02359 17660832
    282382 4v54:AH (3.3) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    282383 4v54:AI (3.3) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    282384 4v54:AJ (3.3) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    282385 4v54:AK (3.3) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    282386 4v54:AL (3.3) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    282387 4v54:AM (3.3) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    282388 4v54:AN (3.3) BS01 rna ? GO:0000028 ... P0AG59 17660832
    282389 4v54:AO (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    282390 4v54:AO (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    282391 4v54:AP (3.3) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    282392 4v54:AQ (3.3) BS01 rna ? GO:0000028 ... P0AG63 17660832
    282393 4v54:AR (3.3) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    282394 4v54:AS (3.3) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    282395 4v54:AT (3.3) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    282396 4v54:AU (3.3) BS01 rna ? GO:0000028 ... P68679 17660832
    282397 4v54:B0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    282398 4v54:B1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    282399 4v54:B2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    282400 4v54:B3 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 17660832

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).