SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    282601 4v55:DO (4.0) BS02 rna ? GO:0002181 ... P0C018 17660832
    282602 4v55:DP (4.0) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    282603 4v55:DP (4.0) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    282604 4v55:DQ (4.0) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    282605 4v55:DR (4.0) BS01 rna ? GO:0002181 ... P0AG48 17660832
    282606 4v55:DS (4.0) BS01 rna ? GO:0002181 ... P61175 17660832
    282607 4v55:DT (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    282608 4v55:DU (4.0) BS01 rna ? GO:0000027 ... P60624 17660832
    282609 4v55:DV (4.0) BS01 rna ? GO:0000027 ... P68919 17660832
    282610 4v55:DW (4.0) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    282611 4v55:DW (4.0) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    282612 4v55:DX (4.0) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    282613 4v55:DY (4.0) BS01 rna ? GO:0000027 ... P0AG51 17660832
    282614 4v55:DY (4.0) BS02 rna ? GO:0000027 ... P0AG51 17660832
    282615 4v55:DZ (4.0) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    282616 4v56:AB (3.93) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    282617 4v56:AC (3.93) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    282618 4v56:AD (3.93) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    282619 4v56:AE (3.93) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    282620 4v56:AE (3.93) BS02 SCM ? GO:0000028 ... P0A7W1 17696316
    282621 4v56:AF (3.93) BS01 rna ? GO:0002181 ... P02358 17696316
    282622 4v56:AG (3.93) BS01 rna ? GO:0000028 ... P02359 17696316
    282623 4v56:AH (3.93) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    282624 4v56:AI (3.93) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    282625 4v56:AJ (3.93) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    282626 4v56:AK (3.93) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    282627 4v56:AL (3.93) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    282628 4v56:AM (3.93) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    282629 4v56:AN (3.93) BS01 rna ? GO:0000028 ... P0AG59 17696316
    282630 4v56:AO (3.93) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    282631 4v56:AO (3.93) BS02 rna ? GO:0000028 ... P0ADZ4 17696316
    282632 4v56:AP (3.93) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    282633 4v56:AQ (3.93) BS01 rna ? GO:0000028 ... P0AG63 17696316
    282634 4v56:AR (3.93) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    282635 4v56:AS (3.93) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    282636 4v56:AT (3.93) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    282637 4v56:AU (3.93) BS01 rna ? GO:0000028 ... P68679 17696316
    282638 4v56:B0 (3.93) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    282639 4v56:B1 (3.93) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    282640 4v56:B2 (3.93) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    282641 4v56:B3 (3.93) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    282642 4v56:B4 (3.93) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    282643 4v56:B4 (3.93) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    282644 4v56:BC (3.93) BS01 rna ? GO:0000027 ... P60422 17696316
    282645 4v56:BD (3.93) BS01 rna ? GO:0000027 ... P60438 17696316
    282646 4v56:BE (3.93) BS01 rna ? GO:0001070 ... P60723 17696316
    282647 4v56:BF (3.93) BS01 rna ? GO:0000027 ... P62399 17696316
    282648 4v56:BF (3.93) BS02 rna ? GO:0000027 ... P62399 17696316
    282649 4v56:BG (3.93) BS01 rna ? GO:0000027 ... P0AG55 17696316
    282650 4v56:BH (3.93) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    282651 4v56:BH (3.93) BS02 rna ? GO:0002181 ... P0A7R1 17696316
    282652 4v56:BI (3.93) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    282653 4v56:BJ (3.93) BS01 rna ? GO:0002181 ... P0AA10 17696316
    282654 4v56:BK (3.93) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    282655 4v56:BK (3.93) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    282656 4v56:BL (3.93) BS01 rna ? GO:0002181 ... P02413 17696316
    282657 4v56:BM (3.93) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    282658 4v56:BM (3.93) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    282659 4v56:BN (3.93) BS01 rna ? GO:0000027 ... P0AG44 17696316
    282660 4v56:BO (3.93) BS01 rna ? GO:0002181 ... P0C018 17696316
    282661 4v56:BO (3.93) BS02 rna ? GO:0002181 ... P0C018 17696316
    282662 4v56:BP (3.93) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    282663 4v56:BP (3.93) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    282664 4v56:BQ (3.93) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    282665 4v56:BR (3.93) BS01 rna ? GO:0002181 ... P0AG48 17696316
    282666 4v56:BS (3.93) BS01 rna ? GO:0002181 ... P61175 17696316
    282667 4v56:BT (3.93) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    282668 4v56:BU (3.93) BS01 rna ? GO:0000027 ... P60624 17696316
    282669 4v56:BV (3.93) BS01 rna ? GO:0000027 ... P68919 17696316
    282670 4v56:BV (3.93) BS02 rna ? GO:0000027 ... P68919 17696316
    282671 4v56:BW (3.93) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    282672 4v56:BW (3.93) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    282673 4v56:BX (3.93) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    282674 4v56:BY (3.93) BS01 rna ? GO:0000027 ... P0AG51 17696316
    282675 4v56:BY (3.93) BS02 rna ? GO:0000027 ... P0AG51 17696316
    282676 4v56:BZ (3.93) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    282677 4v56:CB (3.93) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    282678 4v56:CC (3.93) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    282679 4v56:CD (3.93) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    282680 4v56:CE (3.93) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    282681 4v56:CF (3.93) BS01 rna ? GO:0002181 ... P02358 17696316
    282682 4v56:CG (3.93) BS01 rna ? GO:0000028 ... P02359 17696316
    282683 4v56:CH (3.93) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    282684 4v56:CI (3.93) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    282685 4v56:CJ (3.93) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    282686 4v56:CJ (3.93) BS02 rna ? GO:0000049 ... P0A7R5 17696316
    282687 4v56:CK (3.93) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    282688 4v56:CL (3.93) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    282689 4v56:CM (3.93) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    282690 4v56:CN (3.93) BS01 rna ? GO:0000028 ... P0AG59 17696316
    282691 4v56:CO (3.93) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    282692 4v56:CO (3.93) BS02 rna ? GO:0000028 ... P0ADZ4 17696316
    282693 4v56:CP (3.93) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    282694 4v56:CQ (3.93) BS01 rna ? GO:0000028 ... P0AG63 17696316
    282695 4v56:CR (3.93) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    282696 4v56:CS (3.93) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    282697 4v56:CT (3.93) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    282698 4v56:CU (3.93) BS01 rna ? GO:0000028 ... P68679 17696316
    282699 4v56:D0 (3.93) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    282700 4v56:D1 (3.93) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    282701 4v56:D2 (3.93) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    282702 4v56:D3 (3.93) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    282703 4v56:D4 (3.93) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    282704 4v56:D4 (3.93) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    282705 4v56:DC (3.93) BS01 rna ? GO:0000027 ... P60422 17696316
    282706 4v56:DD (3.93) BS01 rna ? GO:0000027 ... P60438 17696316
    282707 4v56:DE (3.93) BS01 rna ? GO:0001070 ... P60723 17696316
    282708 4v56:DF (3.93) BS01 rna ? GO:0000027 ... P62399 17696316
    282709 4v56:DF (3.93) BS02 rna ? GO:0000027 ... P62399 17696316
    282710 4v56:DG (3.93) BS01 rna ? GO:0000027 ... P0AG55 17696316
    282711 4v56:DH (3.93) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    282712 4v56:DI (3.93) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    282713 4v56:DJ (3.93) BS01 rna ? GO:0002181 ... P0AA10 17696316
    282714 4v56:DK (3.93) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    282715 4v56:DK (3.93) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    282716 4v56:DL (3.93) BS01 rna ? GO:0002181 ... P02413 17696316
    282717 4v56:DM (3.93) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    282718 4v56:DM (3.93) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    282719 4v56:DN (3.93) BS01 rna ? GO:0000027 ... P0AG44 17696316
    282720 4v56:DO (3.93) BS01 rna ? GO:0002181 ... P0C018 17696316
    282721 4v56:DO (3.93) BS02 rna ? GO:0002181 ... P0C018 17696316
    282722 4v56:DP (3.93) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    282723 4v56:DP (3.93) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    282724 4v56:DQ (3.93) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    282725 4v56:DR (3.93) BS01 rna ? GO:0002181 ... P0AG48 17696316
    282726 4v56:DS (3.93) BS01 rna ? GO:0002181 ... P61175 17696316
    282727 4v56:DT (3.93) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    282728 4v56:DU (3.93) BS01 rna ? GO:0000027 ... P60624 17696316
    282729 4v56:DV (3.93) BS01 rna ? GO:0000027 ... P68919 17696316
    282730 4v56:DW (3.93) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    282731 4v56:DW (3.93) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    282732 4v56:DX (3.93) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    282733 4v56:DY (3.93) BS01 rna ? GO:0000027 ... P0AG51 17696316
    282734 4v56:DY (3.93) BS02 rna ? GO:0000027 ... P0AG51 17696316
    282735 4v56:DZ (3.93) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    282736 4v57:AB (3.5) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    282737 4v57:AC (3.5) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    282738 4v57:AD (3.5) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    282739 4v57:AE (3.5) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    282740 4v57:AF (3.5) BS01 rna ? GO:0002181 ... P02358 17696316
    282741 4v57:AG (3.5) BS01 rna ? GO:0000028 ... P02359 17696316
    282742 4v57:AH (3.5) BS01 rna ? GO:0000028 ... P0A7W7 17696316
    282743 4v57:AI (3.5) BS01 rna ? GO:0000049 ... P0A7X3 17696316
    282744 4v57:AJ (3.5) BS01 rna ? GO:0000049 ... P0A7R5 17696316
    282745 4v57:AK (3.5) BS01 rna ? GO:0002181 ... P0A7R9 17696316
    282746 4v57:AL (3.5) BS01 rna ? GO:0000049 ... P0A7S3 17696316
    282747 4v57:AM (3.5) BS01 rna ? GO:0000049 ... P0A7S9 17696316
    282748 4v57:AN (3.5) BS01 rna ? GO:0000028 ... P0AG59 17696316
    282749 4v57:AO (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 17696316
    282750 4v57:AO (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 17696316
    282751 4v57:AP (3.5) BS01 rna ? GO:0000028 ... P0A7T3 17696316
    282752 4v57:AQ (3.5) BS01 rna ? GO:0000028 ... P0AG63 17696316
    282753 4v57:AR (3.5) BS01 rna ? GO:0002181 ... P0A7T7 17696316
    282754 4v57:AS (3.5) BS01 rna ? GO:0000028 ... P0A7U3 17696316
    282755 4v57:AT (3.5) BS01 rna ? GO:0000028 ... P0A7U7 17696316
    282756 4v57:AU (3.5) BS01 rna ? GO:0000028 ... P68679 17696316
    282757 4v57:B0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 17696316
    282758 4v57:B1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 17696316
    282759 4v57:B2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 17696316
    282760 4v57:B3 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 17696316
    282761 4v57:B4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 17696316
    282762 4v57:B4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 17696316
    282763 4v57:BC (3.5) BS01 rna ? GO:0000027 ... P60422 17696316
    282764 4v57:BD (3.5) BS01 rna ? GO:0000027 ... P60438 17696316
    282765 4v57:BE (3.5) BS01 rna ? GO:0001070 ... P60723 17696316
    282766 4v57:BF (3.5) BS01 rna ? GO:0000027 ... P62399 17696316
    282767 4v57:BF (3.5) BS02 rna ? GO:0000027 ... P62399 17696316
    282768 4v57:BG (3.5) BS01 rna ? GO:0000027 ... P0AG55 17696316
    282769 4v57:BH (3.5) BS01 rna ? GO:0002181 ... P0A7R1 17696316
    282770 4v57:BH (3.5) BS02 rna ? GO:0002181 ... P0A7R1 17696316
    282771 4v57:BI (3.5) BS01 rna ? GO:0000027 ... P0A7J7 17696316
    282772 4v57:BJ (3.5) BS01 rna ? GO:0002181 ... P0AA10 17696316
    282773 4v57:BK (3.5) BS01 rna ? GO:0002181 ... P0ADY3 17696316
    282774 4v57:BK (3.5) BS02 rna ? GO:0002181 ... P0ADY3 17696316
    282775 4v57:BL (3.5) BS01 rna ? GO:0002181 ... P02413 17696316
    282776 4v57:BM (3.5) BS01 rna ? GO:0000027 ... P0ADY7 17696316
    282777 4v57:BM (3.5) BS02 rna ? GO:0000027 ... P0ADY7 17696316
    282778 4v57:BN (3.5) BS01 rna ? GO:0000027 ... P0AG44 17696316
    282779 4v57:BO (3.5) BS01 rna ? GO:0002181 ... P0C018 17696316
    282780 4v57:BO (3.5) BS02 rna ? GO:0002181 ... P0C018 17696316
    282781 4v57:BP (3.5) BS01 rna ? GO:0000027 ... P0A7K6 17696316
    282782 4v57:BP (3.5) BS02 rna ? GO:0000027 ... P0A7K6 17696316
    282783 4v57:BQ (3.5) BS01 rna ? GO:0000027 ... P0A7L3 17696316
    282784 4v57:BR (3.5) BS01 rna ? GO:0002181 ... P0AG48 17696316
    282785 4v57:BS (3.5) BS01 rna ? GO:0002181 ... P61175 17696316
    282786 4v57:BT (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 17696316
    282787 4v57:BU (3.5) BS01 rna ? GO:0000027 ... P60624 17696316
    282788 4v57:BV (3.5) BS01 rna ? GO:0000027 ... P68919 17696316
    282789 4v57:BV (3.5) BS02 rna ? GO:0000027 ... P68919 17696316
    282790 4v57:BW (3.5) BS01 rna ? GO:0000027 ... P0A7L8 17696316
    282791 4v57:BW (3.5) BS02 rna ? GO:0000027 ... P0A7L8 17696316
    282792 4v57:BX (3.5) BS01 rna ? GO:0000027 ... P0A7M6 17696316
    282793 4v57:BY (3.5) BS01 rna ? GO:0000027 ... P0AG51 17696316
    282794 4v57:BY (3.5) BS02 rna ? GO:0000027 ... P0AG51 17696316
    282795 4v57:BZ (3.5) BS01 rna ? GO:0000027 ... P0A7M2 17696316
    282796 4v57:CB (3.5) BS01 rna ? GO:0000028 ... P0A7V0 17696316
    282797 4v57:CC (3.5) BS01 rna ? GO:0000028 ... P0A7V3 17696316
    282798 4v57:CD (3.5) BS01 rna ? GO:0000028 ... P0A7V8 17696316
    282799 4v57:CE (3.5) BS01 rna ? GO:0000028 ... P0A7W1 17696316
    282800 4v57:CF (3.5) BS01 rna ? GO:0002181 ... P02358 17696316

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).