SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    283401 4v5d:D2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 19363482
    283402 4v5d:D2 (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 19363482
    283403 4v5d:D2 (3.5) BS03 MG ? GO:0003735 ... Q5SHP6 19363482
    283404 4v5d:D3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 19363482
    283405 4v5d:D5 (3.5) BS01 rna ? GO:0003735 ... P80339 19363482
    283406 4v5d:D6 (3.5) BS01 rna ? GO:0000049 ... P35871 19363482
    283407 4v5d:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 19363482
    283408 4v5d:D7 (3.5) BS02 MG ? GO:0003735 ... P80340 19363482
    283409 4v5d:D8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 19363482
    283410 4v5d:D9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 19363482
    283411 4v5d:D9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 19363482
    283412 4v5d:DC (3.5) BS01 rna ? GO:0000049 ... Q5SLP7 19363482
    283413 4v5d:DD (3.5) BS01 rna ? GO:0002181 ... P60405 19363482
    283414 4v5d:DD (3.5) BS02 MG ? GO:0002181 ... P60405 19363482
    283415 4v5d:DE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 19363482
    283416 4v5d:DF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 19363482
    283417 4v5d:DF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 19363482
    283418 4v5d:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 19363482
    283419 4v5d:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 19363482
    283420 4v5d:DG (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 19363482
    283421 4v5d:DH (3.5) BS01 rna N/A GO:0003735 ... N/A 19363482
    283422 4v5d:DI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 19363482
    283423 4v5d:DN (3.5) BS01 rna ? GO:0003729 ... P60488 19363482
    283424 4v5d:DO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 19363482
    283425 4v5d:DO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 19363482
    283426 4v5d:DP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 19363482
    283427 4v5d:DQ (3.5) BS01 rna ? GO:0000049 ... P60489 19363482
    283428 4v5d:DQ (3.5) BS02 rna ? GO:0000049 ... P60489 19363482
    283429 4v5d:DQ (3.5) BS03 rna ? GO:0000049 ... P60489 19363482
    283430 4v5d:DR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 19363482
    283431 4v5d:DR (3.5) BS02 MG ? GO:0003735 ... Q9Z9H5 19363482
    283432 4v5d:DS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 19363482
    283433 4v5d:DS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 19363482
    283434 4v5d:DT (3.5) BS01 rna ? GO:0003735 ... P60490 19363482
    283435 4v5d:DT (3.5) BS02 rna ? GO:0003735 ... P60490 19363482
    283436 4v5d:DU (3.5) BS01 rna ? GO:0000027 ... P60491 19363482
    283437 4v5d:DV (3.5) BS01 rna ? GO:0003723 ... P60492 19363482
    283438 4v5d:DV (3.5) BS02 MG ? GO:0003723 ... P60492 19363482
    283439 4v5d:DW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 19363482
    283440 4v5d:DX (3.5) BS01 rna ? GO:0003735 ... Q5SHP0 19363482
    283441 4v5d:DX (3.5) BS02 MG ? GO:0003735 ... Q5SHP0 19363482
    283442 4v5d:DY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 19363482
    283443 4v5d:DZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 19363482
    283444 4v5d:DZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 19363482
    283445 4v5e:AB (3.45) BS01 rna ? GO:0003735 ... P80371 18988853
    283446 4v5e:AC (3.45) BS01 rna ? GO:0003676 ... P80372 18988853
    283447 4v5e:AD (3.45) BS01 rna ? GO:0003723 ... P80373 18988853
    283448 4v5e:AD (3.45) BS02 ZN ? GO:0003723 ... P80373 18988853
    283449 4v5e:AE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 18988853
    283450 4v5e:AF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 18988853
    283451 4v5e:AG (3.45) BS01 rna ? GO:0000049 ... P17291 18988853
    283452 4v5e:AG (3.45) BS02 rna ? GO:0000049 ... P17291 18988853
    283453 4v5e:AH (3.45) BS01 rna ? GO:0003735 ... P0DOY9 18988853
    283454 4v5e:AI (3.45) BS01 rna ? GO:0000049 ... P80374 18988853
    283455 4v5e:AI (3.45) BS02 rna ? GO:0000049 ... P80374 18988853
    283456 4v5e:AJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 18988853
    283457 4v5e:AK (3.45) BS01 rna ? GO:0003735 ... P80376 18988853
    283458 4v5e:AL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 18988853
    283459 4v5e:AM (3.45) BS01 rna ? GO:0000049 ... P80377 18988853
    283460 4v5e:AN (3.45) BS01 rna ? GO:0003735 ... P0DOY6 18988853
    283461 4v5e:AN (3.45) BS02 ZN ? GO:0003735 ... P0DOY6 18988853
    283462 4v5e:AO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 18988853
    283463 4v5e:AO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 18988853
    283464 4v5e:AP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 18988853
    283465 4v5e:AQ (3.45) BS01 rna ? GO:0003735 ... P0DOY7 18988853
    283466 4v5e:AR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 18988853
    283467 4v5e:AS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 18988853
    283468 4v5e:AT (3.45) BS01 rna ? GO:0003723 ... P80380 18988853
    283469 4v5e:AY (3.45) BS01 rna ? GO:0000049 ... Q5SM01 18988853
    283470 4v5e:AY (3.45) BS02 rna ? GO:0000049 ... Q5SM01 18988853
    283471 4v5e:AY (3.45) BS03 rna ? GO:0000049 ... Q5SM01 18988853
    283472 4v5e:AY (3.45) BS04 rna ? GO:0000049 ... Q5SM01 18988853
    283473 4v5e:B0 (3.45) BS01 rna ? GO:0003735 ... P60493 18988853
    283474 4v5e:B0 (3.45) BS02 rna ? GO:0003735 ... P60493 18988853
    283475 4v5e:B1 (3.45) BS01 rna ? GO:0003735 ... P60494 18988853
    283476 4v5e:B2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 18988853
    283477 4v5e:B3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 18988853
    283478 4v5e:B3 (3.45) BS02 rna ? GO:0003735 ... Q5SHQ6 18988853
    283479 4v5e:B5 (3.45) BS01 rna ? GO:0003735 ... P80339 18988853
    283480 4v5e:B6 (3.45) BS01 rna ? GO:0000049 ... P35871 18988853
    283481 4v5e:B7 (3.45) BS01 rna ? GO:0003735 ... P80340 18988853
    283482 4v5e:B8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 18988853
    283483 4v5e:B9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 18988853
    283484 4v5e:B9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 18988853
    283485 4v5e:BC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 18988853
    283486 4v5e:BC (3.45) BS02 rna ? GO:0000049 ... Q5SLP7 18988853
    283487 4v5e:BD (3.45) BS01 rna ? GO:0002181 ... P60405 18988853
    283488 4v5e:BD (3.45) BS02 MG ? GO:0002181 ... P60405 18988853
    283489 4v5e:BD (3.45) BS03 MG ? GO:0002181 ... P60405 18988853
    283490 4v5e:BE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 18988853
    283491 4v5e:BF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 18988853
    283492 4v5e:BG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 18988853
    283493 4v5e:BG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 18988853
    283494 4v5e:BG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 18988853
    283495 4v5e:BH (3.45) BS01 rna ? GO:0002181 ... P0DOY8 18988853
    283496 4v5e:BI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 18988853
    283497 4v5e:BJ (3.45) BS01 rna N/A N/A N/A 18988853
    283498 4v5e:BK (3.45) BS01 rna ? GO:0003735 ... Q5SLP6 18988853
    283499 4v5e:BN (3.45) BS01 rna ? GO:0003729 ... P60488 18988853
    283500 4v5e:BO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 18988853
    283501 4v5e:BP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 18988853
    283502 4v5e:BP (3.45) BS02 MG ? GO:0003735 ... Q5SHQ7 18988853
    283503 4v5e:BQ (3.45) BS01 rna ? GO:0000049 ... P60489 18988853
    283504 4v5e:BQ (3.45) BS02 rna ? GO:0000049 ... P60489 18988853
    283505 4v5e:BR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 18988853
    283506 4v5e:BS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 18988853
    283507 4v5e:BS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 18988853
    283508 4v5e:BT (3.45) BS01 rna ? GO:0003735 ... P60490 18988853
    283509 4v5e:BT (3.45) BS02 rna ? GO:0003735 ... P60490 18988853
    283510 4v5e:BU (3.45) BS01 rna ? GO:0000027 ... P60491 18988853
    283511 4v5e:BV (3.45) BS01 rna ? GO:0003723 ... P60492 18988853
    283512 4v5e:BW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 18988853
    283513 4v5e:BX (3.45) BS01 rna ? GO:0003735 ... Q5SHP0 18988853
    283514 4v5e:BY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 18988853
    283515 4v5e:BZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 18988853
    283516 4v5e:BZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 18988853
    283517 4v5e:CB (3.45) BS01 rna ? GO:0003735 ... P80371 18988853
    283518 4v5e:CC (3.45) BS01 rna ? GO:0003676 ... P80372 18988853
    283519 4v5e:CD (3.45) BS01 rna ? GO:0003723 ... P80373 18988853
    283520 4v5e:CD (3.45) BS02 ZN ? GO:0003723 ... P80373 18988853
    283521 4v5e:CE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 18988853
    283522 4v5e:CF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 18988853
    283523 4v5e:CG (3.45) BS01 rna ? GO:0000049 ... P17291 18988853
    283524 4v5e:CG (3.45) BS02 rna ? GO:0000049 ... P17291 18988853
    283525 4v5e:CH (3.45) BS01 rna ? GO:0003735 ... P0DOY9 18988853
    283526 4v5e:CI (3.45) BS01 rna ? GO:0000049 ... P80374 18988853
    283527 4v5e:CI (3.45) BS02 rna ? GO:0000049 ... P80374 18988853
    283528 4v5e:CJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 18988853
    283529 4v5e:CK (3.45) BS01 rna ? GO:0003735 ... P80376 18988853
    283530 4v5e:CL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 18988853
    283531 4v5e:CL (3.45) BS02 MG ? GO:0000049 ... Q5SHN3 18988853
    283532 4v5e:CM (3.45) BS01 rna ? GO:0000049 ... P80377 18988853
    283533 4v5e:CM (3.45) BS02 rna ? GO:0000049 ... P80377 18988853
    283534 4v5e:CN (3.45) BS01 rna ? GO:0003735 ... P0DOY6 18988853
    283535 4v5e:CN (3.45) BS02 MG ? GO:0003735 ... P0DOY6 18988853
    283536 4v5e:CN (3.45) BS03 ZN ? GO:0003735 ... P0DOY6 18988853
    283537 4v5e:CO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 18988853
    283538 4v5e:CO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 18988853
    283539 4v5e:CP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 18988853
    283540 4v5e:CQ (3.45) BS01 rna ? GO:0003735 ... P0DOY7 18988853
    283541 4v5e:CR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 18988853
    283542 4v5e:CS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 18988853
    283543 4v5e:CT (3.45) BS01 rna ? GO:0003723 ... P80380 18988853
    283544 4v5e:CY (3.45) BS01 rna ? GO:0000049 ... Q5SM01 18988853
    283545 4v5e:CY (3.45) BS02 rna ? GO:0000049 ... Q5SM01 18988853
    283546 4v5e:CY (3.45) BS03 rna ? GO:0000049 ... Q5SM01 18988853
    283547 4v5e:CY (3.45) BS04 rna ? GO:0000049 ... Q5SM01 18988853
    283548 4v5e:D0 (3.45) BS01 rna ? GO:0003735 ... P60493 18988853
    283549 4v5e:D0 (3.45) BS02 rna ? GO:0003735 ... P60493 18988853
    283550 4v5e:D1 (3.45) BS01 rna ? GO:0003735 ... P60494 18988853
    283551 4v5e:D2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 18988853
    283552 4v5e:D3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 18988853
    283553 4v5e:D5 (3.45) BS01 rna ? GO:0003735 ... P80339 18988853
    283554 4v5e:D6 (3.45) BS01 rna ? GO:0000049 ... P35871 18988853
    283555 4v5e:D7 (3.45) BS01 rna ? GO:0003735 ... P80340 18988853
    283556 4v5e:D8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 18988853
    283557 4v5e:D9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 18988853
    283558 4v5e:D9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 18988853
    283559 4v5e:DC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 18988853
    283560 4v5e:DD (3.45) BS01 rna ? GO:0002181 ... P60405 18988853
    283561 4v5e:DD (3.45) BS02 MG ? GO:0002181 ... P60405 18988853
    283562 4v5e:DE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 18988853
    283563 4v5e:DF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 18988853
    283564 4v5e:DG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 18988853
    283565 4v5e:DG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 18988853
    283566 4v5e:DG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 18988853
    283567 4v5e:DH (3.45) BS01 rna ? GO:0002181 ... P0DOY8 18988853
    283568 4v5e:DH (3.45) BS02 MG ? GO:0002181 ... P0DOY8 18988853
    283569 4v5e:DI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 18988853
    283570 4v5e:DI (3.45) BS02 rna ? GO:0003735 ... Q5SLQ1 18988853
    283571 4v5e:DJ (3.45) BS01 rna N/A N/A N/A 18988853
    283572 4v5e:DK (3.45) BS01 rna ? GO:0003735 ... Q5SLP6 18988853
    283573 4v5e:DN (3.45) BS01 rna ? GO:0003729 ... P60488 18988853
    283574 4v5e:DO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 18988853
    283575 4v5e:DO (3.45) BS02 rna ? GO:0003735 ... Q5SHP8 18988853
    283576 4v5e:DP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 18988853
    283577 4v5e:DQ (3.45) BS01 rna ? GO:0000049 ... P60489 18988853
    283578 4v5e:DQ (3.45) BS02 rna ? GO:0000049 ... P60489 18988853
    283579 4v5e:DR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 18988853
    283580 4v5e:DR (3.45) BS02 MG ? GO:0003735 ... Q9Z9H5 18988853
    283581 4v5e:DS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 18988853
    283582 4v5e:DS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 18988853
    283583 4v5e:DT (3.45) BS01 rna ? GO:0003735 ... P60490 18988853
    283584 4v5e:DT (3.45) BS02 rna ? GO:0003735 ... P60490 18988853
    283585 4v5e:DU (3.45) BS01 rna ? GO:0000027 ... P60491 18988853
    283586 4v5e:DV (3.45) BS01 rna ? GO:0003723 ... P60492 18988853
    283587 4v5e:DW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 18988853
    283588 4v5e:DX (3.45) BS01 rna ? GO:0003735 ... Q5SHP0 18988853
    283589 4v5e:DY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 18988853
    283590 4v5e:DZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 18988853
    283591 4v5e:DZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 18988853
    283592 4v5f:AB (3.6) BS01 rna ? GO:0003735 ... P80371 19833919
    283593 4v5f:AC (3.6) BS01 rna ? GO:0003676 ... P80372 19833919
    283594 4v5f:AD (3.6) BS01 rna ? GO:0003723 ... P80373 19833919
    283595 4v5f:AD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833919
    283596 4v5f:AE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833919
    283597 4v5f:AF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833919
    283598 4v5f:AG (3.6) BS01 rna ? GO:0000049 ... P17291 19833919
    283599 4v5f:AG (3.6) BS02 rna ? GO:0000049 ... P17291 19833919
    283600 4v5f:AH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).