SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    283601 4v5f:AI (3.6) BS01 rna ? GO:0000049 ... P80374 19833919
    283602 4v5f:AJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833919
    283603 4v5f:AK (3.6) BS01 rna ? GO:0003735 ... P80376 19833919
    283604 4v5f:AL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833919
    283605 4v5f:AM (3.6) BS01 rna ? GO:0000049 ... P80377 19833919
    283606 4v5f:AM (3.6) BS02 rna ? GO:0000049 ... P80377 19833919
    283607 4v5f:AN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    283608 4v5f:AN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833919
    283609 4v5f:AO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833919
    283610 4v5f:AP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833919
    283611 4v5f:AQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    283612 4v5f:AR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833919
    283613 4v5f:AS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833919
    283614 4v5f:AT (3.6) BS01 rna ? GO:0003723 ... P80380 19833919
    283615 4v5f:AY (3.6) BS01 rna ? GO:0003746 ... Q5SHN5 19833919
    283616 4v5f:AY (3.6) BS02 rna ? GO:0003746 ... Q5SHN5 19833919
    283617 4v5f:AY (3.6) BS03 rna ? GO:0003746 ... Q5SHN5 19833919
    283618 4v5f:AY (3.6) BS04 rna ? GO:0003746 ... Q5SHN5 19833919
    283619 4v5f:AY (3.6) BS05 FUA ? GO:0003746 ... Q5SHN5 19833919
    283620 4v5f:AY (3.6) BS06 GDP ? GO:0003746 ... Q5SHN5 19833919
    283621 4v5f:B0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833919
    283622 4v5f:B0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833919
    283623 4v5f:B0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833919
    283624 4v5f:B1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833919
    283625 4v5f:B2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833919
    283626 4v5f:B3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833919
    283627 4v5f:B3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 19833919
    283628 4v5f:B4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 19833919
    283629 4v5f:B5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833919
    283630 4v5f:B6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833919
    283631 4v5f:B7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833919
    283632 4v5f:B8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833919
    283633 4v5f:B9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833919
    283634 4v5f:B9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833919
    283635 4v5f:BC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833919
    283636 4v5f:BC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833919
    283637 4v5f:BD (3.6) BS01 rna ? GO:0002181 ... P60405 19833919
    283638 4v5f:BE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833919
    283639 4v5f:BF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833919
    283640 4v5f:BG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833919
    283641 4v5f:BG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833919
    283642 4v5f:BG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833919
    283643 4v5f:BH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    283644 4v5f:BJ (3.6) BS01 rna N/A N/A N/A 19833919
    283645 4v5f:BK (3.6) BS01 rna ? GO:0003735 ... Q5SLP6 19833919
    283646 4v5f:BL (3.6) BS01 peptide N/A N/A N/A 19833919
    283647 4v5f:BN (3.6) BS01 rna ? GO:0003729 ... P60488 19833919
    283648 4v5f:BO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833919
    283649 4v5f:BO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 19833919
    283650 4v5f:BP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833919
    283651 4v5f:BQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833919
    283652 4v5f:BQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833919
    283653 4v5f:BR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833919
    283654 4v5f:BS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833919
    283655 4v5f:BS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833919
    283656 4v5f:BT (3.6) BS01 rna ? GO:0003735 ... P60490 19833919
    283657 4v5f:BT (3.6) BS02 rna ? GO:0003735 ... P60490 19833919
    283658 4v5f:BU (3.6) BS01 rna ? GO:0000027 ... P60491 19833919
    283659 4v5f:BV (3.6) BS01 rna ? GO:0003723 ... P60492 19833919
    283660 4v5f:BW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833919
    283661 4v5f:BX (3.6) BS01 rna ? GO:0003735 ... Q5SHP0 19833919
    283662 4v5f:BY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833919
    283663 4v5f:BZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833919
    283664 4v5f:BZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833919
    283665 4v5f:Bl (3.6) BS01 peptide N/A N/A N/A 19833919
    283666 4v5f:CB (3.6) BS01 rna ? GO:0003735 ... P80371 19833919
    283667 4v5f:CC (3.6) BS01 rna ? GO:0003676 ... P80372 19833919
    283668 4v5f:CD (3.6) BS01 rna ? GO:0003723 ... P80373 19833919
    283669 4v5f:CD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833919
    283670 4v5f:CE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833919
    283671 4v5f:CF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833919
    283672 4v5f:CG (3.6) BS01 rna ? GO:0000049 ... P17291 19833919
    283673 4v5f:CG (3.6) BS02 rna ? GO:0000049 ... P17291 19833919
    283674 4v5f:CH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    283675 4v5f:CI (3.6) BS01 rna ? GO:0000049 ... P80374 19833919
    283676 4v5f:CI (3.6) BS02 rna ? GO:0000049 ... P80374 19833919
    283677 4v5f:CJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833919
    283678 4v5f:CK (3.6) BS01 rna ? GO:0003735 ... P80376 19833919
    283679 4v5f:CL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833919
    283680 4v5f:CM (3.6) BS01 rna ? GO:0000049 ... P80377 19833919
    283681 4v5f:CM (3.6) BS02 rna ? GO:0000049 ... P80377 19833919
    283682 4v5f:CN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    283683 4v5f:CN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833919
    283684 4v5f:CO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833919
    283685 4v5f:CO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 19833919
    283686 4v5f:CP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833919
    283687 4v5f:CQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    283688 4v5f:CR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833919
    283689 4v5f:CS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833919
    283690 4v5f:CT (3.6) BS01 rna ? GO:0003723 ... P80380 19833919
    283691 4v5f:CY (3.6) BS01 rna ? GO:0003746 ... Q5SHN5 19833919
    283692 4v5f:CY (3.6) BS02 rna ? GO:0003746 ... Q5SHN5 19833919
    283693 4v5f:CY (3.6) BS03 rna ? GO:0003746 ... Q5SHN5 19833919
    283694 4v5f:CY (3.6) BS04 rna ? GO:0003746 ... Q5SHN5 19833919
    283695 4v5f:CY (3.6) BS05 FUA ? GO:0003746 ... Q5SHN5 19833919
    283696 4v5f:CY (3.6) BS06 GDP ? GO:0003746 ... Q5SHN5 19833919
    283697 4v5f:D0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833919
    283698 4v5f:D0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833919
    283699 4v5f:D0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833919
    283700 4v5f:D1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833919
    283701 4v5f:D1 (3.6) BS02 rna ? GO:0003735 ... P60494 19833919
    283702 4v5f:D2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833919
    283703 4v5f:D3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833919
    283704 4v5f:D3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 19833919
    283705 4v5f:D4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 19833919
    283706 4v5f:D5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833919
    283707 4v5f:D6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833919
    283708 4v5f:D7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833919
    283709 4v5f:D8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833919
    283710 4v5f:D9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833919
    283711 4v5f:D9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833919
    283712 4v5f:DC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833919
    283713 4v5f:DC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833919
    283714 4v5f:DD (3.6) BS01 rna ? GO:0002181 ... P60405 19833919
    283715 4v5f:DD (3.6) BS02 rna ? GO:0002181 ... P60405 19833919
    283716 4v5f:DE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833919
    283717 4v5f:DF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833919
    283718 4v5f:DG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833919
    283719 4v5f:DG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833919
    283720 4v5f:DG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833919
    283721 4v5f:DH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833919
    283722 4v5f:DJ (3.6) BS01 rna N/A N/A N/A 19833919
    283723 4v5f:DK (3.6) BS01 rna ? GO:0003735 ... Q5SLP6 19833919
    283724 4v5f:DL (3.6) BS01 peptide N/A N/A N/A 19833919
    283725 4v5f:DN (3.6) BS01 rna ? GO:0003729 ... P60488 19833919
    283726 4v5f:DO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833919
    283727 4v5f:DO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 19833919
    283728 4v5f:DP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833919
    283729 4v5f:DQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833919
    283730 4v5f:DQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833919
    283731 4v5f:DR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833919
    283732 4v5f:DS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833919
    283733 4v5f:DS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833919
    283734 4v5f:DT (3.6) BS01 rna ? GO:0003735 ... P60490 19833919
    283735 4v5f:DT (3.6) BS02 rna ? GO:0003735 ... P60490 19833919
    283736 4v5f:DU (3.6) BS01 rna ? GO:0000027 ... P60491 19833919
    283737 4v5f:DV (3.6) BS01 rna ? GO:0003723 ... P60492 19833919
    283738 4v5f:DW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833919
    283739 4v5f:DX (3.6) BS01 rna ? GO:0003735 ... Q5SHP0 19833919
    283740 4v5f:DY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833919
    283741 4v5f:DZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833919
    283742 4v5f:DZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833919
    283743 4v5f:Dl (3.6) BS01 peptide N/A N/A N/A 19833919
    283744 4v5g:AB (3.6) BS01 rna ? GO:0003735 ... P80371 19833920
    283745 4v5g:AC (3.6) BS01 rna ? GO:0003676 ... P80372 19833920
    283746 4v5g:AD (3.6) BS01 rna ? GO:0003723 ... P80373 19833920
    283747 4v5g:AD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833920
    283748 4v5g:AE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833920
    283749 4v5g:AF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833920
    283750 4v5g:AG (3.6) BS01 rna ? GO:0000049 ... P17291 19833920
    283751 4v5g:AG (3.6) BS02 rna ? GO:0000049 ... P17291 19833920
    283752 4v5g:AH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    283753 4v5g:AI (3.6) BS01 rna ? GO:0000049 ... P80374 19833920
    283754 4v5g:AI (3.6) BS02 rna ? GO:0000049 ... P80374 19833920
    283755 4v5g:AJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833920
    283756 4v5g:AK (3.6) BS01 rna ? GO:0003735 ... P80376 19833920
    283757 4v5g:AK (3.6) BS02 rna ? GO:0003735 ... P80376 19833920
    283758 4v5g:AL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833920
    283759 4v5g:AL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 19833920
    283760 4v5g:AM (3.6) BS01 rna ? GO:0000049 ... P80377 19833920
    283761 4v5g:AM (3.6) BS02 rna ? GO:0000049 ... P80377 19833920
    283762 4v5g:AM (3.6) BS03 rna ? GO:0000049 ... P80377 19833920
    283763 4v5g:AN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    283764 4v5g:AN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833920
    283765 4v5g:AO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833920
    283766 4v5g:AP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833920
    283767 4v5g:AQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    283768 4v5g:AR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833920
    283769 4v5g:AS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833920
    283770 4v5g:AT (3.6) BS01 rna ? GO:0003723 ... P80380 19833920
    283771 4v5g:AZ (3.6) BS01 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283772 4v5g:AZ (3.6) BS02 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283773 4v5g:AZ (3.6) BS03 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283774 4v5g:AZ (3.6) BS04 GDP 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283775 4v5g:AZ (3.6) BS05 KIR 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283776 4v5g:B0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833920
    283777 4v5g:B0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833920
    283778 4v5g:B0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833920
    283779 4v5g:B1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833920
    283780 4v5g:B2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833920
    283781 4v5g:B3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833920
    283782 4v5g:B5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833920
    283783 4v5g:B6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833920
    283784 4v5g:B7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833920
    283785 4v5g:B8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833920
    283786 4v5g:B9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833920
    283787 4v5g:B9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833920
    283788 4v5g:BC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833920
    283789 4v5g:BC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833920
    283790 4v5g:BD (3.6) BS01 rna ? GO:0002181 ... P60405 19833920
    283791 4v5g:BE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833920
    283792 4v5g:BF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833920
    283793 4v5g:BG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833920
    283794 4v5g:BG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833920
    283795 4v5g:BG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833920
    283796 4v5g:BH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    283797 4v5g:BJ (3.6) BS01 rna N/A N/A N/A 19833920
    283798 4v5g:BK (3.6) BS01 rna N/A N/A N/A 19833920
    283799 4v5g:BN (3.6) BS01 rna ? GO:0003729 ... P60488 19833920
    283800 4v5g:BO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833920

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).