SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    283801 4v5g:BP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833920
    283802 4v5g:BQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833920
    283803 4v5g:BQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833920
    283804 4v5g:BR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833920
    283805 4v5g:BS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833920
    283806 4v5g:BS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833920
    283807 4v5g:BT (3.6) BS01 rna ? GO:0003735 ... P60490 19833920
    283808 4v5g:BT (3.6) BS02 rna ? GO:0003735 ... P60490 19833920
    283809 4v5g:BU (3.6) BS01 rna ? GO:0000027 ... P60491 19833920
    283810 4v5g:BV (3.6) BS01 rna ? GO:0003723 ... P60492 19833920
    283811 4v5g:BW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833920
    283812 4v5g:BX (3.6) BS01 rna ? GO:0003735 ... Q5SHP0 19833920
    283813 4v5g:BY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833920
    283814 4v5g:BZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833920
    283815 4v5g:BZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833920
    283816 4v5g:CB (3.6) BS01 rna ? GO:0003735 ... P80371 19833920
    283817 4v5g:CC (3.6) BS01 rna ? GO:0003676 ... P80372 19833920
    283818 4v5g:CD (3.6) BS01 rna ? GO:0003723 ... P80373 19833920
    283819 4v5g:CD (3.6) BS02 ZN ? GO:0003723 ... P80373 19833920
    283820 4v5g:CE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 19833920
    283821 4v5g:CF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 19833920
    283822 4v5g:CG (3.6) BS01 rna ? GO:0000049 ... P17291 19833920
    283823 4v5g:CG (3.6) BS02 rna ? GO:0000049 ... P17291 19833920
    283824 4v5g:CH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    283825 4v5g:CI (3.6) BS01 rna ? GO:0000049 ... P80374 19833920
    283826 4v5g:CI (3.6) BS02 rna ? GO:0000049 ... P80374 19833920
    283827 4v5g:CJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 19833920
    283828 4v5g:CK (3.6) BS01 rna ? GO:0003735 ... P80376 19833920
    283829 4v5g:CK (3.6) BS02 rna ? GO:0003735 ... P80376 19833920
    283830 4v5g:CL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 19833920
    283831 4v5g:CL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 19833920
    283832 4v5g:CM (3.6) BS01 rna ? GO:0000049 ... P80377 19833920
    283833 4v5g:CM (3.6) BS02 rna ? GO:0000049 ... P80377 19833920
    283834 4v5g:CM (3.6) BS03 rna ? GO:0000049 ... P80377 19833920
    283835 4v5g:CN (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    283836 4v5g:CN (3.6) BS02 ZN N/A GO:0003735 ... N/A 19833920
    283837 4v5g:CO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 19833920
    283838 4v5g:CO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 19833920
    283839 4v5g:CP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 19833920
    283840 4v5g:CQ (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    283841 4v5g:CR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 19833920
    283842 4v5g:CS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 19833920
    283843 4v5g:CT (3.6) BS01 rna ? GO:0003723 ... P80380 19833920
    283844 4v5g:CZ (3.6) BS01 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283845 4v5g:CZ (3.6) BS02 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283846 4v5g:CZ (3.6) BS03 rna 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283847 4v5g:CZ (3.6) BS04 GDP 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283848 4v5g:CZ (3.6) BS05 KIR 3.6.5.3 GO:0003723 ... Q5SHN6 19833920
    283849 4v5g:D0 (3.6) BS01 rna ? GO:0003735 ... P60493 19833920
    283850 4v5g:D0 (3.6) BS02 rna ? GO:0003735 ... P60493 19833920
    283851 4v5g:D0 (3.6) BS03 rna ? GO:0003735 ... P60493 19833920
    283852 4v5g:D1 (3.6) BS01 rna ? GO:0003735 ... P60494 19833920
    283853 4v5g:D1 (3.6) BS02 rna ? GO:0003735 ... P60494 19833920
    283854 4v5g:D2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 19833920
    283855 4v5g:D3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 19833920
    283856 4v5g:D3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 19833920
    283857 4v5g:D5 (3.6) BS01 rna ? GO:0003735 ... P80339 19833920
    283858 4v5g:D6 (3.6) BS01 rna ? GO:0000049 ... P35871 19833920
    283859 4v5g:D7 (3.6) BS01 rna ? GO:0003735 ... P80340 19833920
    283860 4v5g:D8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 19833920
    283861 4v5g:D9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 19833920
    283862 4v5g:D9 (3.6) BS02 ZN ? GO:0003735 ... Q5SHR2 19833920
    283863 4v5g:DC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 19833920
    283864 4v5g:DC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 19833920
    283865 4v5g:DD (3.6) BS01 rna ? GO:0002181 ... P60405 19833920
    283866 4v5g:DD (3.6) BS02 rna ? GO:0002181 ... P60405 19833920
    283867 4v5g:DE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 19833920
    283868 4v5g:DF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 19833920
    283869 4v5g:DG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 19833920
    283870 4v5g:DG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 19833920
    283871 4v5g:DG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 19833920
    283872 4v5g:DH (3.6) BS01 rna N/A GO:0003735 ... N/A 19833920
    283873 4v5g:DJ (3.6) BS01 rna N/A N/A N/A 19833920
    283874 4v5g:DK (3.6) BS01 rna N/A N/A N/A 19833920
    283875 4v5g:DN (3.6) BS01 rna ? GO:0003729 ... P60488 19833920
    283876 4v5g:DO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 19833920
    283877 4v5g:DO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 19833920
    283878 4v5g:DP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 19833920
    283879 4v5g:DQ (3.6) BS01 rna ? GO:0000049 ... P60489 19833920
    283880 4v5g:DQ (3.6) BS02 rna ? GO:0000049 ... P60489 19833920
    283881 4v5g:DR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 19833920
    283882 4v5g:DS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 19833920
    283883 4v5g:DS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 19833920
    283884 4v5g:DT (3.6) BS01 rna ? GO:0003735 ... P60490 19833920
    283885 4v5g:DT (3.6) BS02 rna ? GO:0003735 ... P60490 19833920
    283886 4v5g:DU (3.6) BS01 rna ? GO:0000027 ... P60491 19833920
    283887 4v5g:DV (3.6) BS01 rna ? GO:0003723 ... P60492 19833920
    283888 4v5g:DW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 19833920
    283889 4v5g:DX (3.6) BS01 rna ? GO:0003735 ... Q5SHP0 19833920
    283890 4v5g:DY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 19833920
    283891 4v5g:DZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 19833920
    283892 4v5g:DZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 19833920
    283893 4v5h:AB (5.8) BS01 rna ? GO:0000028 ... P0A7V0 19933110
    283894 4v5h:AC (5.8) BS01 rna ? GO:0003676 ... P0A7V3 19933110
    283895 4v5h:AD (5.8) BS01 rna ? GO:0000028 ... P0A7V8 19933110
    283896 4v5h:AE (5.8) BS01 rna ? GO:0000028 ... P0A7W1 19933110
    283897 4v5h:AF (5.8) BS01 rna ? GO:0003735 ... P02358 19933110
    283898 4v5h:AG (5.8) BS01 rna ? GO:0003723 ... P02359 19933110
    283899 4v5h:AG (5.8) BS02 rna ? GO:0003723 ... P02359 19933110
    283900 4v5h:AH (5.8) BS01 rna ? GO:0000028 ... P0A7W7 19933110
    283901 4v5h:AI (5.8) BS01 rna ? GO:0000049 ... P0A7X3 19933110
    283902 4v5h:AJ (5.8) BS01 rna ? GO:0000049 ... P0A7R5 19933110
    283903 4v5h:AK (5.8) BS01 rna ? GO:0002181 ... P0A7R9 19933110
    283904 4v5h:AL (5.8) BS01 rna ? GO:0000049 ... P0A7S3 19933110
    283905 4v5h:AM (5.8) BS01 rna ? GO:0000049 ... P0A7S9 19933110
    283906 4v5h:AM (5.8) BS02 rna ? GO:0000049 ... P0A7S9 19933110
    283907 4v5h:AN (5.8) BS01 rna ? GO:0000028 ... P0AG59 19933110
    283908 4v5h:AO (5.8) BS01 rna ? GO:0003735 ... Q8X9M2 19933110
    283909 4v5h:AO (5.8) BS02 rna ? GO:0003735 ... Q8X9M2 19933110
    283910 4v5h:AP (5.8) BS01 rna ? GO:0000028 ... P0A7T3 19933110
    283911 4v5h:AQ (5.8) BS01 rna ? GO:0000028 ... P0AG63 19933110
    283912 4v5h:AR (5.8) BS01 rna ? GO:0003735 ... P0A7T7 19933110
    283913 4v5h:AS (5.8) BS01 rna ? GO:0003723 ... P0A7U3 19933110
    283914 4v5h:AT (5.8) BS01 rna ? GO:0000028 ... P0A7U7 19933110
    283915 4v5h:AU (5.8) BS01 rna ? GO:0003735 ... P68679 19933110
    283916 4v5h:B0 (5.8) BS01 rna ? GO:0000027 ... P0A7M2 19933110
    283917 4v5h:B1 (5.8) BS01 rna ? GO:0000027 ... P0A7M6 19933110
    283918 4v5h:B2 (5.8) BS01 rna ? GO:0000027 ... P0AG51 19933110
    283919 4v5h:B2 (5.8) BS02 rna ? GO:0000027 ... P0AG51 19933110
    283920 4v5h:B3 (5.8) BS01 rna ? GO:0000027 ... P0A7N4 19933110
    283921 4v5h:B4 (5.8) BS01 rna ? GO:0000027 ... P0A7N9 19933110
    283922 4v5h:B5 (5.8) BS01 rna ? GO:0000027 ... P0A7L0 19933110
    283923 4v5h:B6 (5.8) BS01 rna ? GO:0002181 ... P0A7P5 19933110
    283924 4v5h:B7 (5.8) BS01 rna ? GO:0002181 ... P0A7Q1 19933110
    283925 4v5h:B8 (5.8) BS01 rna ? GO:0002181 ... P0A7Q6 19933110
    283926 4v5h:BC (5.8) BS01 rna ? GO:0000027 ... P60422 19933110
    283927 4v5h:BD (5.8) BS01 rna ? GO:0000027 ... P60438 19933110
    283928 4v5h:BE (5.8) BS01 rna ? GO:0001070 ... P60723 19933110
    283929 4v5h:BF (5.8) BS01 rna ? GO:0000027 ... P62399 19933110
    283930 4v5h:BF (5.8) BS02 rna ? GO:0000027 ... P62399 19933110
    283931 4v5h:BF (5.8) BS03 rna ? GO:0000027 ... P62399 19933110
    283932 4v5h:BG (5.8) BS01 rna ? GO:0000027 ... P0AG55 19933110
    283933 4v5h:BH (5.8) BS01 rna ? GO:0002181 ... P0A7R1 19933110
    283934 4v5h:BI (5.8) BS01 rna ? GO:0000027 ... P0A7J7 19933110
    283935 4v5h:BJ (5.8) BS01 rna ? GO:0002181 ... P0AA10 19933110
    283936 4v5h:BK (5.8) BS01 rna ? GO:0002181 ... P0ADY3 19933110
    283937 4v5h:BK (5.8) BS02 rna ? GO:0002181 ... P0ADY3 19933110
    283938 4v5h:BL (5.8) BS01 rna ? GO:0002181 ... P02413 19933110
    283939 4v5h:BM (5.8) BS01 rna ? GO:0000027 ... P0ADY7 19933110
    283940 4v5h:BM (5.8) BS02 rna ? GO:0000027 ... P0ADY7 19933110
    283941 4v5h:BN (5.8) BS01 rna ? GO:0000027 ... P0AG44 19933110
    283942 4v5h:BO (5.8) BS01 rna ? GO:0002181 ... P0C018 19933110
    283943 4v5h:BO (5.8) BS02 rna ? GO:0002181 ... P0C018 19933110
    283944 4v5h:BP (5.8) BS01 rna ? GO:0000027 ... P0A7K6 19933110
    283945 4v5h:BP (5.8) BS02 rna ? GO:0000027 ... P0A7K6 19933110
    283946 4v5h:BQ (5.8) BS01 rna ? GO:0000027 ... P0A7L3 19933110
    283947 4v5h:BR (5.8) BS01 rna ? GO:0002181 ... P0AG48 19933110
    283948 4v5h:BS (5.8) BS01 rna ? GO:0002181 ... P61175 19933110
    283949 4v5h:BT (5.8) BS01 rna ? GO:0000027 ... P0ADZ0 19933110
    283950 4v5h:BU (5.8) BS01 rna ? GO:0000027 ... P60624 19933110
    283951 4v5h:BW (5.8) BS01 rna ? GO:0000027 ... P68919 19933110
    283952 4v5h:BY (5.8) BS01 rna ? GO:0000027 ... P0A7L8 19933110
    283953 4v5h:BY (5.8) BS02 rna ? GO:0000027 ... P0A7L8 19933110
    283954 4v5i:AS (5.464) BS01 CA N/A N/A N/A 20351260
    283955 4v5i:AT (5.464) BS01 CA N/A N/A N/A 20351260
    283956 4v5i:AU (5.464) BS01 CA N/A N/A N/A 20351260
    283957 4v5i:AV (5.464) BS01 CA N/A N/A N/A 20351260
    283958 4v5i:AW (5.464) BS01 CA N/A N/A N/A 20351260
    283959 4v5i:AX (5.464) BS01 CA N/A N/A N/A 20351260
    283960 4v5i:BS (5.464) BS01 CA N/A N/A N/A 20351260
    283961 4v5i:BT (5.464) BS01 CA N/A N/A N/A 20351260
    283962 4v5i:BU (5.464) BS01 CA N/A N/A N/A 20351260
    283963 4v5i:BV (5.464) BS01 CA N/A N/A N/A 20351260
    283964 4v5i:BW (5.464) BS01 CA N/A N/A N/A 20351260
    283965 4v5i:BX (5.464) BS01 CA N/A N/A N/A 20351260
    283966 4v5j:AB (3.1) BS01 rna ? GO:0003735 ... P80371 20421507
    283967 4v5j:AC (3.1) BS01 rna ? GO:0003676 ... P80372 20421507
    283968 4v5j:AD (3.1) BS01 rna ? GO:0003723 ... P80373 20421507
    283969 4v5j:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 20421507
    283970 4v5j:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 20421507
    283971 4v5j:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 20421507
    283972 4v5j:AG (3.1) BS01 rna ? GO:0000049 ... P17291 20421507
    283973 4v5j:AG (3.1) BS02 rna ? GO:0000049 ... P17291 20421507
    283974 4v5j:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 20421507
    283975 4v5j:AI (3.1) BS01 rna ? GO:0000049 ... P62669 20421507
    283976 4v5j:AI (3.1) BS02 rna ? GO:0000049 ... P62669 20421507
    283977 4v5j:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 20421507
    283978 4v5j:AK (3.1) BS01 rna ? GO:0003735 ... P80376 20421507
    283979 4v5j:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 20421507
    283980 4v5j:AL (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 20421507
    283981 4v5j:AM (3.1) BS01 rna ? GO:0000049 ... P80377 20421507
    283982 4v5j:AM (3.1) BS02 rna ? GO:0000049 ... P80377 20421507
    283983 4v5j:AM (3.1) BS03 rna ? GO:0000049 ... P80377 20421507
    283984 4v5j:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 20421507
    283985 4v5j:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 20421507
    283986 4v5j:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 20421507
    283987 4v5j:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 20421507
    283988 4v5j:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 20421507
    283989 4v5j:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 20421507
    283990 4v5j:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 20421507
    283991 4v5j:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 20421507
    283992 4v5j:AS (3.1) BS02 MG ? GO:0000028 ... Q5SHP2 20421507
    283993 4v5j:AT (3.1) BS01 rna ? GO:0003723 ... P80380 20421507
    283994 4v5j:AY (3.1) BS01 rna ? GO:0000049 ... Q5SM01 20421507
    283995 4v5j:AY (3.1) BS02 rna ? GO:0000049 ... Q5SM01 20421507
    283996 4v5j:AY (3.1) BS03 rna ? GO:0000049 ... Q5SM01 20421507
    283997 4v5j:AY (3.1) BS04 rna ? GO:0000049 ... Q5SM01 20421507
    283998 4v5j:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 20421507
    283999 4v5j:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 20421507
    284000 4v5j:B0 (3.1) BS03 rna ? GO:0003735 ... P60493 20421507

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).