SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    284001 4v5j:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 20421507
    284002 4v5j:B1 (3.1) BS02 rna ? GO:0003735 ... P60494 20421507
    284003 4v5j:B1 (3.1) BS03 MG ? GO:0003735 ... P60494 20421507
    284004 4v5j:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 20421507
    284005 4v5j:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 20421507
    284006 4v5j:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 20421507
    284007 4v5j:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 20421507
    284008 4v5j:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 20421507
    284009 4v5j:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 20421507
    284010 4v5j:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 20421507
    284011 4v5j:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 20421507
    284012 4v5j:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 20421507
    284013 4v5j:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 20421507
    284014 4v5j:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 20421507
    284015 4v5j:BD (3.1) BS01 rna ? GO:0002181 ... P60405 20421507
    284016 4v5j:BD (3.1) BS02 rna ? GO:0002181 ... P60405 20421507
    284017 4v5j:BD (3.1) BS03 MG ? GO:0002181 ... P60405 20421507
    284018 4v5j:BD (3.1) BS04 MG ? GO:0002181 ... P60405 20421507
    284019 4v5j:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 20421507
    284020 4v5j:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 20421507
    284021 4v5j:BF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 20421507
    284022 4v5j:BF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 20421507
    284023 4v5j:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 20421507
    284024 4v5j:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 20421507
    284025 4v5j:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 20421507
    284026 4v5j:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 20421507
    284027 4v5j:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 20421507
    284028 4v5j:BJ (3.1) BS01 rna N/A N/A N/A 20421507
    284029 4v5j:BK (3.1) BS01 rna ? GO:0003735 ... Q5SLP6 20421507
    284030 4v5j:BN (3.1) BS01 rna ? GO:0003729 ... P60488 20421507
    284031 4v5j:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 20421507
    284032 4v5j:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 20421507
    284033 4v5j:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 20421507
    284034 4v5j:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 20421507
    284035 4v5j:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 20421507
    284036 4v5j:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 20421507
    284037 4v5j:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 20421507
    284038 4v5j:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 20421507
    284039 4v5j:BT (3.1) BS01 rna ? GO:0003735 ... P60490 20421507
    284040 4v5j:BT (3.1) BS02 rna ? GO:0003735 ... P60490 20421507
    284041 4v5j:BU (3.1) BS01 rna ? GO:0000027 ... P60491 20421507
    284042 4v5j:BV (3.1) BS01 rna ? GO:0003723 ... P60492 20421507
    284043 4v5j:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 20421507
    284044 4v5j:BX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 20421507
    284045 4v5j:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 20421507
    284046 4v5j:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 20421507
    284047 4v5j:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 20421507
    284048 4v5j:BZ (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 20421507
    284049 4v5j:CB (3.1) BS01 rna ? GO:0003735 ... P80371 20421507
    284050 4v5j:CC (3.1) BS01 rna ? GO:0003676 ... P80372 20421507
    284051 4v5j:CD (3.1) BS01 rna ? GO:0003723 ... P80373 20421507
    284052 4v5j:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 20421507
    284053 4v5j:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 20421507
    284054 4v5j:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 20421507
    284055 4v5j:CG (3.1) BS01 rna ? GO:0000049 ... P17291 20421507
    284056 4v5j:CG (3.1) BS02 rna ? GO:0000049 ... P17291 20421507
    284057 4v5j:CG (3.1) BS03 rna ? GO:0000049 ... P17291 20421507
    284058 4v5j:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 20421507
    284059 4v5j:CI (3.1) BS01 rna ? GO:0000049 ... P62669 20421507
    284060 4v5j:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 20421507
    284061 4v5j:CK (3.1) BS01 rna ? GO:0003735 ... P80376 20421507
    284062 4v5j:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 20421507
    284063 4v5j:CM (3.1) BS01 rna ? GO:0000049 ... P80377 20421507
    284064 4v5j:CM (3.1) BS02 rna ? GO:0000049 ... P80377 20421507
    284065 4v5j:CM (3.1) BS03 rna ? GO:0000049 ... P80377 20421507
    284066 4v5j:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 20421507
    284067 4v5j:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 20421507
    284068 4v5j:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 20421507
    284069 4v5j:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 20421507
    284070 4v5j:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 20421507
    284071 4v5j:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 20421507
    284072 4v5j:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 20421507
    284073 4v5j:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 20421507
    284074 4v5j:CS (3.1) BS02 MG ? GO:0000028 ... Q5SHP2 20421507
    284075 4v5j:CT (3.1) BS01 rna ? GO:0003723 ... P80380 20421507
    284076 4v5j:CY (3.1) BS01 rna ? GO:0000049 ... Q5SM01 20421507
    284077 4v5j:CY (3.1) BS02 rna ? GO:0000049 ... Q5SM01 20421507
    284078 4v5j:CY (3.1) BS03 rna ? GO:0000049 ... Q5SM01 20421507
    284079 4v5j:CY (3.1) BS04 rna ? GO:0000049 ... Q5SM01 20421507
    284080 4v5j:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 20421507
    284081 4v5j:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 20421507
    284082 4v5j:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 20421507
    284083 4v5j:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 20421507
    284084 4v5j:D1 (3.1) BS02 rna ? GO:0003735 ... P60494 20421507
    284085 4v5j:D1 (3.1) BS03 MG ? GO:0003735 ... P60494 20421507
    284086 4v5j:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 20421507
    284087 4v5j:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 20421507
    284088 4v5j:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 20421507
    284089 4v5j:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 20421507
    284090 4v5j:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 20421507
    284091 4v5j:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 20421507
    284092 4v5j:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 20421507
    284093 4v5j:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 20421507
    284094 4v5j:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 20421507
    284095 4v5j:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 20421507
    284096 4v5j:DC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 20421507
    284097 4v5j:DD (3.1) BS01 rna ? GO:0002181 ... P60405 20421507
    284098 4v5j:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 20421507
    284099 4v5j:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 20421507
    284100 4v5j:DF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 20421507
    284101 4v5j:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 20421507
    284102 4v5j:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 20421507
    284103 4v5j:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 20421507
    284104 4v5j:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 20421507
    284105 4v5j:DI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 20421507
    284106 4v5j:DI (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 20421507
    284107 4v5j:DJ (3.1) BS01 rna N/A N/A N/A 20421507
    284108 4v5j:DK (3.1) BS01 rna ? GO:0003735 ... Q5SLP6 20421507
    284109 4v5j:DN (3.1) BS01 rna ? GO:0003729 ... P60488 20421507
    284110 4v5j:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 20421507
    284111 4v5j:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 20421507
    284112 4v5j:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 20421507
    284113 4v5j:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 20421507
    284114 4v5j:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 20421507
    284115 4v5j:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 20421507
    284116 4v5j:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 20421507
    284117 4v5j:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 20421507
    284118 4v5j:DT (3.1) BS01 rna ? GO:0003735 ... P60490 20421507
    284119 4v5j:DT (3.1) BS02 rna ? GO:0003735 ... P60490 20421507
    284120 4v5j:DU (3.1) BS01 rna ? GO:0000027 ... P60491 20421507
    284121 4v5j:DV (3.1) BS01 rna ? GO:0003723 ... P60492 20421507
    284122 4v5j:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 20421507
    284123 4v5j:DX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 20421507
    284124 4v5j:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 20421507
    284125 4v5j:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 20421507
    284126 4v5j:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 20421507
    284127 4v5j:DZ (3.1) BS03 MG ? GO:0003723 ... Q5SHZ1 20421507
    284128 4v5k:AB (3.2) BS01 rna ? GO:0003735 ... P80371 20852642
    284129 4v5k:AC (3.2) BS01 rna ? GO:0003676 ... P80372 20852642
    284130 4v5k:AC (3.2) BS02 rna ? GO:0003676 ... P80372 20852642
    284131 4v5k:AC (3.2) BS03 MG ? GO:0003676 ... P80372 20852642
    284132 4v5k:AD (3.2) BS01 rna ? GO:0003723 ... P80373 20852642
    284133 4v5k:AD (3.2) BS02 MG ? GO:0003723 ... P80373 20852642
    284134 4v5k:AE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 20852642
    284135 4v5k:AE (3.2) BS02 rna ? GO:0003723 ... Q5SHQ5 20852642
    284136 4v5k:AF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 20852642
    284137 4v5k:AG (3.2) BS01 rna ? GO:0000049 ... P17291 20852642
    284138 4v5k:AG (3.2) BS02 rna ? GO:0000049 ... P17291 20852642
    284139 4v5k:AH (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    284140 4v5k:AI (3.2) BS01 rna ? GO:0000049 ... P80374 20852642
    284141 4v5k:AI (3.2) BS02 MG ? GO:0000049 ... P80374 20852642
    284142 4v5k:AI (3.2) BS03 MG ? GO:0000049 ... P80374 20852642
    284143 4v5k:AJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 20852642
    284144 4v5k:AK (3.2) BS01 rna ? GO:0003735 ... P80376 20852642
    284145 4v5k:AK (3.2) BS02 MG ? GO:0003735 ... P80376 20852642
    284146 4v5k:AL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 20852642
    284147 4v5k:AL (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 20852642
    284148 4v5k:AL (3.2) BS03 MG ? GO:0000049 ... Q5SHN3 20852642
    284149 4v5k:AL (3.2) BS04 MG ? GO:0000049 ... Q5SHN3 20852642
    284150 4v5k:AM (3.2) BS01 rna ? GO:0000049 ... P80377 20852642
    284151 4v5k:AN (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    284152 4v5k:AN (3.2) BS02 MG N/A GO:0003735 ... N/A 20852642
    284153 4v5k:AN (3.2) BS03 ZN N/A GO:0003735 ... N/A 20852642
    284154 4v5k:AN (3.2) BS04 MG N/A GO:0003735 ... N/A 20852642
    284155 4v5k:AO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 20852642
    284156 4v5k:AO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 20852642
    284157 4v5k:AP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 20852642
    284158 4v5k:AP (3.2) BS02 MG ? GO:0003735 ... Q5SJH3 20852642
    284159 4v5k:AQ (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    284160 4v5k:AR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 20852642
    284161 4v5k:AS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 20852642
    284162 4v5k:AT (3.2) BS01 rna ? GO:0003723 ... P80380 20852642
    284163 4v5k:AY (3.2) BS01 rna 4.6.1.- GO:0003723 ... P00646 20852642
    284164 4v5k:AY (3.2) BS02 rna 4.6.1.- GO:0003723 ... P00646 20852642
    284165 4v5k:AY (3.2) BS03 rna 4.6.1.- GO:0003723 ... P00646 20852642
    284166 4v5k:AY (3.2) BS04 rna 4.6.1.- GO:0003723 ... P00646 20852642
    284167 4v5k:B0 (3.2) BS01 rna ? GO:0003735 ... P60493 20852642
    284168 4v5k:B0 (3.2) BS02 rna ? GO:0003735 ... P60493 20852642
    284169 4v5k:B1 (3.2) BS01 rna ? GO:0003735 ... P60494 20852642
    284170 4v5k:B2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 20852642
    284171 4v5k:B3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 20852642
    284172 4v5k:B3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 20852642
    284173 4v5k:B5 (3.2) BS01 rna ? GO:0003735 ... P80339 20852642
    284174 4v5k:B6 (3.2) BS01 rna ? GO:0000049 ... P35871 20852642
    284175 4v5k:B6 (3.2) BS02 MG ? GO:0000049 ... P35871 20852642
    284176 4v5k:B7 (3.2) BS01 rna ? GO:0003735 ... P80340 20852642
    284177 4v5k:B8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 20852642
    284178 4v5k:B9 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 20852642
    284179 4v5k:BC (3.2) BS01 rna ? GO:0000049 ... Q5SLP7 20852642
    284180 4v5k:BD (3.2) BS01 rna ? GO:0002181 ... P60405 20852642
    284181 4v5k:BD (3.2) BS02 MG ? GO:0002181 ... P60405 20852642
    284182 4v5k:BD (3.2) BS03 MG ? GO:0002181 ... P60405 20852642
    284183 4v5k:BD (3.2) BS04 MG ? GO:0002181 ... P60405 20852642
    284184 4v5k:BE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 20852642
    284185 4v5k:BE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 20852642
    284186 4v5k:BE (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 20852642
    284187 4v5k:BF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 20852642
    284188 4v5k:BG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 20852642
    284189 4v5k:BG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 20852642
    284190 4v5k:BG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 20852642
    284191 4v5k:BH (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    284192 4v5k:BH (3.2) BS02 MG N/A GO:0003735 ... N/A 20852642
    284193 4v5k:BI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 20852642
    284194 4v5k:BJ (3.2) BS01 rna N/A N/A N/A 20852642
    284195 4v5k:BN (3.2) BS01 rna ? GO:0003729 ... P60488 20852642
    284196 4v5k:BO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 20852642
    284197 4v5k:BO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 20852642
    284198 4v5k:BP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 20852642
    284199 4v5k:BP (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 20852642
    284200 4v5k:BQ (3.2) BS01 rna ? GO:0000049 ... P60489 20852642

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).