SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    284201 4v5k:BQ (3.2) BS02 rna ? GO:0000049 ... P60489 20852642
    284202 4v5k:BQ (3.2) BS03 MG ? GO:0000049 ... P60489 20852642
    284203 4v5k:BR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 20852642
    284204 4v5k:BR (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 20852642
    284205 4v5k:BS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 20852642
    284206 4v5k:BS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 20852642
    284207 4v5k:BT (3.2) BS01 rna ? GO:0003735 ... P60490 20852642
    284208 4v5k:BT (3.2) BS02 rna ? GO:0003735 ... P60490 20852642
    284209 4v5k:BU (3.2) BS01 rna ? GO:0000027 ... P60491 20852642
    284210 4v5k:BV (3.2) BS01 rna ? GO:0003723 ... P60492 20852642
    284211 4v5k:BW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 20852642
    284212 4v5k:BX (3.2) BS01 rna ? GO:0003735 ... Q5SHP0 20852642
    284213 4v5k:BY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 20852642
    284214 4v5k:BZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 20852642
    284215 4v5k:BZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 20852642
    284216 4v5k:CB (3.2) BS01 rna ? GO:0003735 ... P80371 20852642
    284217 4v5k:CC (3.2) BS01 rna ? GO:0003676 ... P80372 20852642
    284218 4v5k:CC (3.2) BS02 MG ? GO:0003676 ... P80372 20852642
    284219 4v5k:CD (3.2) BS01 rna ? GO:0003723 ... P80373 20852642
    284220 4v5k:CD (3.2) BS02 ZN ? GO:0003723 ... P80373 20852642
    284221 4v5k:CE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 20852642
    284222 4v5k:CF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 20852642
    284223 4v5k:CG (3.2) BS01 rna ? GO:0000049 ... P17291 20852642
    284224 4v5k:CG (3.2) BS02 rna ? GO:0000049 ... P17291 20852642
    284225 4v5k:CG (3.2) BS03 rna ? GO:0000049 ... P17291 20852642
    284226 4v5k:CH (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    284227 4v5k:CH (3.2) BS02 MG N/A GO:0003735 ... N/A 20852642
    284228 4v5k:CI (3.2) BS01 rna ? GO:0000049 ... P80374 20852642
    284229 4v5k:CJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 20852642
    284230 4v5k:CJ (3.2) BS02 MG ? GO:0000049 ... Q5SHN7 20852642
    284231 4v5k:CK (3.2) BS01 rna ? GO:0003735 ... P80376 20852642
    284232 4v5k:CL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 20852642
    284233 4v5k:CL (3.2) BS02 peptide ? GO:0000049 ... Q5SHN3 20852642
    284234 4v5k:CM (3.2) BS01 rna ? GO:0000049 ... P80377 20852642
    284235 4v5k:CM (3.2) BS02 rna ? GO:0000049 ... P80377 20852642
    284236 4v5k:CM (3.2) BS03 MG ? GO:0000049 ... P80377 20852642
    284237 4v5k:CM (3.2) BS04 MG ? GO:0000049 ... P80377 20852642
    284238 4v5k:CN (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    284239 4v5k:CO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 20852642
    284240 4v5k:CO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 20852642
    284241 4v5k:CP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 20852642
    284242 4v5k:CQ (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    284243 4v5k:CQ (3.2) BS02 MG N/A GO:0003735 ... N/A 20852642
    284244 4v5k:CR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 20852642
    284245 4v5k:CS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 20852642
    284246 4v5k:CS (3.2) BS02 MG ? GO:0000028 ... Q5SHP2 20852642
    284247 4v5k:CT (3.2) BS01 rna ? GO:0003723 ... P80380 20852642
    284248 4v5k:D0 (3.2) BS01 rna ? GO:0003735 ... P60493 20852642
    284249 4v5k:D0 (3.2) BS02 rna ? GO:0003735 ... P60493 20852642
    284250 4v5k:D1 (3.2) BS01 rna ? GO:0003735 ... P60494 20852642
    284251 4v5k:D1 (3.2) BS02 rna ? GO:0003735 ... P60494 20852642
    284252 4v5k:D2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 20852642
    284253 4v5k:D3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 20852642
    284254 4v5k:D3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 20852642
    284255 4v5k:D5 (3.2) BS01 rna ? GO:0003735 ... P80339 20852642
    284256 4v5k:D5 (3.2) BS02 MG ? GO:0003735 ... P80339 20852642
    284257 4v5k:D5 (3.2) BS03 MG ? GO:0003735 ... P80339 20852642
    284258 4v5k:D6 (3.2) BS01 rna ? GO:0000049 ... P35871 20852642
    284259 4v5k:D7 (3.2) BS01 rna ? GO:0003735 ... P80340 20852642
    284260 4v5k:D7 (3.2) BS02 MG ? GO:0003735 ... P80340 20852642
    284261 4v5k:D8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 20852642
    284262 4v5k:D9 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 20852642
    284263 4v5k:DC (3.2) BS01 rna ? GO:0000049 ... Q5SLP7 20852642
    284264 4v5k:DC (3.2) BS02 rna ? GO:0000049 ... Q5SLP7 20852642
    284265 4v5k:DD (3.2) BS01 rna ? GO:0002181 ... P60405 20852642
    284266 4v5k:DD (3.2) BS02 MG ? GO:0002181 ... P60405 20852642
    284267 4v5k:DD (3.2) BS03 MG ? GO:0002181 ... P60405 20852642
    284268 4v5k:DE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 20852642
    284269 4v5k:DE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 20852642
    284270 4v5k:DE (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 20852642
    284271 4v5k:DE (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 20852642
    284272 4v5k:DF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 20852642
    284273 4v5k:DF (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 20852642
    284274 4v5k:DF (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 20852642
    284275 4v5k:DG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 20852642
    284276 4v5k:DG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 20852642
    284277 4v5k:DG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 20852642
    284278 4v5k:DH (3.2) BS01 rna N/A GO:0003735 ... N/A 20852642
    284279 4v5k:DI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 20852642
    284280 4v5k:DI (3.2) BS02 rna ? GO:0003735 ... Q5SLQ1 20852642
    284281 4v5k:DJ (3.2) BS01 rna N/A N/A N/A 20852642
    284282 4v5k:DN (3.2) BS01 rna ? GO:0003729 ... P60488 20852642
    284283 4v5k:DO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 20852642
    284284 4v5k:DO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 20852642
    284285 4v5k:DP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 20852642
    284286 4v5k:DP (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 20852642
    284287 4v5k:DP (3.2) BS03 MG ? GO:0003735 ... Q5SHQ7 20852642
    284288 4v5k:DQ (3.2) BS01 rna ? GO:0000049 ... P60489 20852642
    284289 4v5k:DR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 20852642
    284290 4v5k:DS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 20852642
    284291 4v5k:DS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 20852642
    284292 4v5k:DT (3.2) BS01 rna ? GO:0003735 ... P60490 20852642
    284293 4v5k:DT (3.2) BS02 rna ? GO:0003735 ... P60490 20852642
    284294 4v5k:DU (3.2) BS01 rna ? GO:0000027 ... P60491 20852642
    284295 4v5k:DU (3.2) BS02 MG ? GO:0000027 ... P60491 20852642
    284296 4v5k:DV (3.2) BS01 rna ? GO:0003723 ... P60492 20852642
    284297 4v5k:DW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 20852642
    284298 4v5k:DW (3.2) BS02 MG ? GO:0003735 ... Q5SHP3 20852642
    284299 4v5k:DX (3.2) BS01 rna ? GO:0003735 ... Q5SHP0 20852642
    284300 4v5k:DY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 20852642
    284301 4v5k:DZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 20852642
    284302 4v5k:DZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 20852642
    284303 4v5l:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21051640
    284304 4v5l:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21051640
    284305 4v5l:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21051640
    284306 4v5l:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21051640
    284307 4v5l:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21051640
    284308 4v5l:AG (3.1) BS01 rna ? GO:0000049 ... P17291 21051640
    284309 4v5l:AG (3.1) BS02 rna ? GO:0000049 ... P17291 21051640
    284310 4v5l:AH (3.1) BS01 rna ? GO:0003735 ... P0DOY9 21051640
    284311 4v5l:AI (3.1) BS01 rna ? GO:0000049 ... P62669 21051640
    284312 4v5l:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21051640
    284313 4v5l:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21051640
    284314 4v5l:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21051640
    284315 4v5l:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21051640
    284316 4v5l:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21051640
    284317 4v5l:AM (3.1) BS03 rna ? GO:0000049 ... P80377 21051640
    284318 4v5l:AM (3.1) BS04 rna ? GO:0000049 ... P80377 21051640
    284319 4v5l:AN (3.1) BS01 rna ? GO:0003735 ... P0DOY6 21051640
    284320 4v5l:AN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 21051640
    284321 4v5l:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21051640
    284322 4v5l:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21051640
    284323 4v5l:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21051640
    284324 4v5l:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21051640
    284325 4v5l:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21051640
    284326 4v5l:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21051640
    284327 4v5l:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21051640
    284328 4v5l:AZ (3.1) BS01 rna ? GO:0003746 ... P60339 21051640
    284329 4v5l:AZ (3.1) BS02 rna ? GO:0003746 ... P60339 21051640
    284330 4v5l:AZ (3.1) BS03 rna ? GO:0003746 ... P60339 21051640
    284331 4v5l:AZ (3.1) BS04 MG ? GO:0003746 ... P60339 21051640
    284332 4v5l:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 21051640
    284333 4v5l:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 21051640
    284334 4v5l:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21051640
    284335 4v5l:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21051640
    284336 4v5l:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21051640
    284337 4v5l:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 21051640
    284338 4v5l:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 21051640
    284339 4v5l:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 21051640
    284340 4v5l:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21051640
    284341 4v5l:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21051640
    284342 4v5l:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21051640
    284343 4v5l:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21051640
    284344 4v5l:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21051640
    284345 4v5l:BD (3.1) BS01 rna ? GO:0002181 ... P60405 21051640
    284346 4v5l:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21051640
    284347 4v5l:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21051640
    284348 4v5l:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21051640
    284349 4v5l:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21051640
    284350 4v5l:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21051640
    284351 4v5l:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 21051640
    284352 4v5l:BJ (3.1) BS01 rna N/A N/A N/A 21051640
    284353 4v5l:BK (3.1) BS01 rna N/A N/A N/A 21051640
    284354 4v5l:BN (3.1) BS01 rna ? GO:0003729 ... P60488 21051640
    284355 4v5l:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21051640
    284356 4v5l:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21051640
    284357 4v5l:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21051640
    284358 4v5l:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 21051640
    284359 4v5l:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 21051640
    284360 4v5l:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21051640
    284361 4v5l:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21051640
    284362 4v5l:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21051640
    284363 4v5l:BT (3.1) BS01 rna ? GO:0003735 ... P60490 21051640
    284364 4v5l:BT (3.1) BS02 rna ? GO:0003735 ... P60490 21051640
    284365 4v5l:BU (3.1) BS01 rna ? GO:0000027 ... P60491 21051640
    284366 4v5l:BV (3.1) BS01 rna ? GO:0003723 ... P60492 21051640
    284367 4v5l:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21051640
    284368 4v5l:BX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 21051640
    284369 4v5l:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21051640
    284370 4v5l:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21051640
    284371 4v5l:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21051640
    284372 4v5m:AB (7.8) BS01 rna ? GO:0003735 ... P80371 21124459
    284373 4v5m:AC (7.8) BS01 rna ? GO:0003676 ... P80372 21124459
    284374 4v5m:AD (7.8) BS01 rna ? GO:0003723 ... P80373 21124459
    284375 4v5m:AE (7.8) BS01 rna ? GO:0003723 ... Q5SHQ5 21124459
    284376 4v5m:AF (7.8) BS01 rna ? GO:0003735 ... Q5SLP8 21124459
    284377 4v5m:AG (7.8) BS01 rna ? GO:0000049 ... P17291 21124459
    284378 4v5m:AH (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    284379 4v5m:AI (7.8) BS01 rna ? GO:0000049 ... P80374 21124459
    284380 4v5m:AJ (7.8) BS01 rna ? GO:0000049 ... Q5SHN7 21124459
    284381 4v5m:AK (7.8) BS01 rna ? GO:0003735 ... P80376 21124459
    284382 4v5m:AL (7.8) BS01 rna ? GO:0000049 ... Q5SHN3 21124459
    284383 4v5m:AM (7.8) BS01 rna ? GO:0000049 ... P80377 21124459
    284384 4v5m:AN (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    284385 4v5m:AO (7.8) BS01 rna ? GO:0003735 ... Q5SJ76 21124459
    284386 4v5m:AP (7.8) BS01 rna ? GO:0003735 ... Q5SJH3 21124459
    284387 4v5m:AQ (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    284388 4v5m:AR (7.8) BS01 rna ? GO:0003735 ... Q5SLQ0 21124459
    284389 4v5m:AS (7.8) BS01 rna ? GO:0000028 ... Q5SHP2 21124459
    284390 4v5m:AT (7.8) BS01 rna ? GO:0003723 ... P80380 21124459
    284391 4v5m:AY (7.8) BS01 rna ? GO:0003746 ... Q5SHN5 21124459
    284392 4v5m:AY (7.8) BS02 rna ? GO:0003746 ... Q5SHN5 21124459
    284393 4v5m:AY (7.8) BS03 FUA ? GO:0003746 ... Q5SHN5 21124459
    284394 4v5m:AY (7.8) BS04 GDP ? GO:0003746 ... Q5SHN5 21124459
    284395 4v5m:B0 (7.8) BS01 rna ? GO:0003735 ... P60493 21124459
    284396 4v5m:B0 (7.8) BS02 rna ? GO:0003735 ... P60493 21124459
    284397 4v5m:B1 (7.8) BS01 rna ? GO:0003735 ... P60494 21124459
    284398 4v5m:B1 (7.8) BS02 rna ? GO:0003735 ... P60494 21124459
    284399 4v5m:B2 (7.8) BS01 rna ? GO:0003735 ... Q5SHP6 21124459
    284400 4v5m:B3 (7.8) BS01 rna ? GO:0003735 ... Q5SHQ6 21124459

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).