SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    284401 4v5m:B4 (7.8) BS01 rna ? GO:0003735 ... Q5SJE1 21124459
    284402 4v5m:B5 (7.8) BS01 rna ? GO:0003735 ... P80339 21124459
    284403 4v5m:B6 (7.8) BS01 rna ? GO:0000049 ... P35871 21124459
    284404 4v5m:B7 (7.8) BS01 rna ? GO:0003735 ... P80340 21124459
    284405 4v5m:B8 (7.8) BS01 rna ? GO:0003735 ... Q5SKU1 21124459
    284406 4v5m:B9 (7.8) BS01 rna ? GO:0003735 ... Q5SHR2 21124459
    284407 4v5m:BC (7.8) BS01 rna ? GO:0000049 ... Q5SLP7 21124459
    284408 4v5m:BC (7.8) BS02 rna ? GO:0000049 ... Q5SLP7 21124459
    284409 4v5m:BD (7.8) BS01 rna ? GO:0002181 ... P60405 21124459
    284410 4v5m:BE (7.8) BS01 rna ? GO:0003735 ... Q5SHN8 21124459
    284411 4v5m:BF (7.8) BS01 rna ? GO:0003735 ... Q5SHN9 21124459
    284412 4v5m:BG (7.8) BS01 rna ? GO:0000049 ... Q5SHQ0 21124459
    284413 4v5m:BG (7.8) BS02 rna ? GO:0000049 ... Q5SHQ0 21124459
    284414 4v5m:BH (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    284415 4v5m:BK (7.8) BS01 rna ? GO:0003735 ... Q5SLP6 21124459
    284416 4v5m:BN (7.8) BS01 rna ? GO:0003729 ... P60488 21124459
    284417 4v5m:BO (7.8) BS01 rna ? GO:0003735 ... Q5SHP8 21124459
    284418 4v5m:BO (7.8) BS02 rna ? GO:0003735 ... Q5SHP8 21124459
    284419 4v5m:BP (7.8) BS01 rna ? GO:0003735 ... Q5SHQ7 21124459
    284420 4v5m:BQ (7.8) BS01 rna ? GO:0000049 ... P60489 21124459
    284421 4v5m:BQ (7.8) BS02 rna ? GO:0000049 ... P60489 21124459
    284422 4v5m:BR (7.8) BS01 rna ? GO:0003735 ... Q9Z9H5 21124459
    284423 4v5m:BS (7.8) BS01 rna ? GO:0003735 ... Q5SHQ4 21124459
    284424 4v5m:BS (7.8) BS02 rna ? GO:0003735 ... Q5SHQ4 21124459
    284425 4v5m:BT (7.8) BS01 rna ? GO:0003735 ... P60490 21124459
    284426 4v5m:BT (7.8) BS02 rna ? GO:0003735 ... P60490 21124459
    284427 4v5m:BU (7.8) BS01 rna ? GO:0000027 ... P60491 21124459
    284428 4v5m:BV (7.8) BS01 rna ? GO:0003723 ... P60492 21124459
    284429 4v5m:BW (7.8) BS01 rna ? GO:0003735 ... Q5SHP3 21124459
    284430 4v5m:BX (7.8) BS01 rna ? GO:0003735 ... Q5SHP0 21124459
    284431 4v5m:BY (7.8) BS01 rna ? GO:0003723 ... Q5SHP9 21124459
    284432 4v5m:BZ (7.8) BS01 rna ? GO:0003723 ... Q5SHZ1 21124459
    284433 4v5m:BZ (7.8) BS02 rna ? GO:0003723 ... Q5SHZ1 21124459
    284434 4v5n:AB (7.6) BS01 rna ? GO:0003735 ... P80371 21124459
    284435 4v5n:AC (7.6) BS01 rna ? GO:0003676 ... P80372 21124459
    284436 4v5n:AD (7.6) BS01 rna ? GO:0003723 ... P80373 21124459
    284437 4v5n:AE (7.6) BS01 rna ? GO:0003723 ... Q5SHQ5 21124459
    284438 4v5n:AF (7.6) BS01 rna ? GO:0003735 ... Q5SLP8 21124459
    284439 4v5n:AG (7.6) BS01 rna ? GO:0000049 ... P17291 21124459
    284440 4v5n:AH (7.6) BS01 rna N/A GO:0003735 ... N/A 21124459
    284441 4v5n:AI (7.6) BS01 rna ? GO:0000049 ... P80374 21124459
    284442 4v5n:AJ (7.6) BS01 rna ? GO:0000049 ... Q5SHN7 21124459
    284443 4v5n:AK (7.6) BS01 rna ? GO:0003735 ... P80376 21124459
    284444 4v5n:AL (7.6) BS01 rna ? GO:0000049 ... Q5SHN3 21124459
    284445 4v5n:AM (7.6) BS01 rna ? GO:0000049 ... P80377 21124459
    284446 4v5n:AM (7.6) BS02 rna ? GO:0000049 ... P80377 21124459
    284447 4v5n:AN (7.6) BS01 rna N/A GO:0003735 ... N/A 21124459
    284448 4v5n:AO (7.6) BS01 rna ? GO:0003735 ... Q5SJ76 21124459
    284449 4v5n:AP (7.6) BS01 rna ? GO:0003735 ... Q5SJH3 21124459
    284450 4v5n:AQ (7.6) BS01 rna N/A GO:0003735 ... N/A 21124459
    284451 4v5n:AR (7.6) BS01 rna ? GO:0003735 ... Q5SLQ0 21124459
    284452 4v5n:AS (7.6) BS01 rna ? GO:0000028 ... Q5SHP2 21124459
    284453 4v5n:AT (7.6) BS01 rna ? GO:0003723 ... P80380 21124459
    284454 4v5n:AY (7.6) BS01 rna ? GO:0003746 ... Q5SHN5 21124459
    284455 4v5n:AY (7.6) BS02 rna ? GO:0003746 ... Q5SHN5 21124459
    284456 4v5n:AY (7.6) BS03 FUA ? GO:0003746 ... Q5SHN5 21124459
    284457 4v5n:AY (7.6) BS04 GDP ? GO:0003746 ... Q5SHN5 21124459
    284458 4v5n:B0 (7.6) BS01 rna ? GO:0003735 ... P60493 21124459
    284459 4v5n:B0 (7.6) BS02 rna ? GO:0003735 ... P60493 21124459
    284460 4v5n:B1 (7.6) BS01 rna ? GO:0003735 ... P60494 21124459
    284461 4v5n:B1 (7.6) BS02 rna ? GO:0003735 ... P60494 21124459
    284462 4v5n:B2 (7.6) BS01 rna ? GO:0003735 ... Q5SHP6 21124459
    284463 4v5n:B3 (7.6) BS01 rna ? GO:0003735 ... Q5SHQ6 21124459
    284464 4v5n:B4 (7.6) BS01 rna ? GO:0003735 ... Q5SJE1 21124459
    284465 4v5n:B5 (7.6) BS01 rna ? GO:0003735 ... P80339 21124459
    284466 4v5n:B6 (7.6) BS01 rna ? GO:0000049 ... P35871 21124459
    284467 4v5n:B7 (7.6) BS01 rna ? GO:0003735 ... P80340 21124459
    284468 4v5n:B8 (7.6) BS01 rna ? GO:0003735 ... Q5SKU1 21124459
    284469 4v5n:B9 (7.6) BS01 rna ? GO:0003735 ... Q5SHR2 21124459
    284470 4v5n:BC (7.6) BS01 rna ? GO:0000049 ... Q5SLP7 21124459
    284471 4v5n:BD (7.6) BS01 rna ? GO:0002181 ... P60405 21124459
    284472 4v5n:BE (7.6) BS01 rna ? GO:0003735 ... Q5SHN8 21124459
    284473 4v5n:BF (7.6) BS01 rna ? GO:0003735 ... Q5SHN9 21124459
    284474 4v5n:BG (7.6) BS01 rna ? GO:0000049 ... Q5SHQ0 21124459
    284475 4v5n:BG (7.6) BS02 rna ? GO:0000049 ... Q5SHQ0 21124459
    284476 4v5n:BH (7.6) BS01 rna N/A GO:0003735 ... N/A 21124459
    284477 4v5n:BK (7.6) BS01 rna ? GO:0003735 ... Q5SLP6 21124459
    284478 4v5n:BN (7.6) BS01 rna ? GO:0003729 ... P60488 21124459
    284479 4v5n:BO (7.6) BS01 rna ? GO:0003735 ... Q5SHP8 21124459
    284480 4v5n:BO (7.6) BS02 rna ? GO:0003735 ... Q5SHP8 21124459
    284481 4v5n:BP (7.6) BS01 rna ? GO:0003735 ... Q5SHQ7 21124459
    284482 4v5n:BQ (7.6) BS01 rna ? GO:0000049 ... P60489 21124459
    284483 4v5n:BQ (7.6) BS02 rna ? GO:0000049 ... P60489 21124459
    284484 4v5n:BR (7.6) BS01 rna ? GO:0003735 ... Q9Z9H5 21124459
    284485 4v5n:BS (7.6) BS01 rna ? GO:0003735 ... Q5SHQ4 21124459
    284486 4v5n:BS (7.6) BS02 rna ? GO:0003735 ... Q5SHQ4 21124459
    284487 4v5n:BT (7.6) BS01 rna ? GO:0003735 ... P60490 21124459
    284488 4v5n:BT (7.6) BS02 rna ? GO:0003735 ... P60490 21124459
    284489 4v5n:BU (7.6) BS01 rna ? GO:0000027 ... P60491 21124459
    284490 4v5n:BV (7.6) BS01 rna ? GO:0003723 ... P60492 21124459
    284491 4v5n:BW (7.6) BS01 rna ? GO:0003735 ... Q5SHP3 21124459
    284492 4v5n:BX (7.6) BS01 rna ? GO:0003735 ... Q5SHP0 21124459
    284493 4v5n:BY (7.6) BS01 rna ? GO:0003723 ... Q5SHP9 21124459
    284494 4v5n:BZ (7.6) BS01 rna ? GO:0003723 ... Q5SHZ1 21124459
    284495 4v5n:BZ (7.6) BS02 rna ? GO:0003723 ... Q5SHZ1 21124459
    284496 4v5o:A1 (3.93) BS01 rna ? GO:0000028 ... Q234G5 21205638
    284497 4v5o:A2 (3.93) BS01 rna ? GO:0003735 ... Q22AV0 21205638
    284498 4v5o:A3 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284499 4v5o:A4 (3.93) BS01 rna ? GO:0003735 ... Q23DE3 21205638
    284500 4v5o:A4 (3.93) BS02 rna ? GO:0003735 ... Q23DE3 21205638
    284501 4v5o:A5 (3.93) BS01 rna ? GO:0003729 ... E6PBU4 21205638
    284502 4v5o:A5 (3.93) BS02 ZN ? GO:0003729 ... E6PBU4 21205638
    284503 4v5o:A6 (3.93) BS01 rna ? GO:0003735 ... Q22CK0 21205638
    284504 4v5o:A6 (3.93) BS02 ZN ? GO:0003735 ... Q22CK0 21205638
    284505 4v5o:A7 (3.93) BS01 rna ? GO:0003723 ... Q24F70 21205638
    284506 4v5o:A8 (3.93) BS01 rna N/A N/A N/A 21205638
    284507 4v5o:A9 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284508 4v5o:A9 (3.93) BS02 ZN N/A GO:0003735 ... N/A 21205638
    284509 4v5o:AB (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284510 4v5o:AC (3.93) BS01 rna ? GO:0003723 ... Q22AV9 21205638
    284511 4v5o:AD (3.93) BS01 rna ? GO:0003723 ... Q230V2 21205638
    284512 4v5o:AE (3.93) BS01 rna ? GO:0003723 ... Q23KG1 21205638
    284513 4v5o:AF (3.93) BS01 rna N/A GO:0003743 ... N/A 21205638
    284514 4v5o:AG (3.93) BS01 rna ? GO:0003723 ... Q22WU7 21205638
    284515 4v5o:AH (3.93) BS01 rna ? GO:0003735 ... Q238Q8 21205638
    284516 4v5o:AI (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284517 4v5o:AJ (3.93) BS01 rna ? GO:0003735 ... Q22DC6 21205638
    284518 4v5o:AK (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284519 4v5o:AL (3.93) BS01 rna ? GO:0003735 ... P06147 21205638
    284520 4v5o:AM (3.93) BS01 rna N/A GO:0003676 ... N/A 21205638
    284521 4v5o:AM (3.93) BS02 rna N/A GO:0003676 ... N/A 21205638
    284522 4v5o:AN (3.93) BS01 rna ? GO:0002181 ... Q22MB0 21205638
    284523 4v5o:AN (3.93) BS02 ZN ? GO:0002181 ... Q22MB0 21205638
    284524 4v5o:AO (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284525 4v5o:AP (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    284526 4v5o:AQ (3.93) BS01 rna ? GO:0003735 ... Q22B78 21205638
    284527 4v5o:AR (3.93) BS01 rna ? GO:0006417 ... Q24D42 21205638
    284528 4v5o:AS (3.93) BS01 rna N/A GO:0003723 ... N/A 21205638
    284529 4v5o:AT (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284530 4v5o:AU (3.93) BS01 rna ? GO:0005840 ... Q22W26 21205638
    284531 4v5o:AV (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284532 4v5o:AW (3.93) BS01 rna ? GO:0003723 ... P0C233 21205638
    284533 4v5o:AX (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284534 4v5o:AY (3.93) BS01 rna ? GO:0003735 ... A4VD76 21205638
    284535 4v5o:AZ (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284536 4v5o:B1 (3.93) BS01 rna ? GO:0000028 ... Q234G5 21205638
    284537 4v5o:B2 (3.93) BS01 rna ? GO:0003735 ... Q22AV0 21205638
    284538 4v5o:B3 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284539 4v5o:B4 (3.93) BS01 rna ? GO:0003735 ... Q23DE3 21205638
    284540 4v5o:B4 (3.93) BS02 rna ? GO:0003735 ... Q23DE3 21205638
    284541 4v5o:B5 (3.93) BS01 rna ? GO:0003729 ... E6PBU4 21205638
    284542 4v5o:B5 (3.93) BS02 ZN ? GO:0003729 ... E6PBU4 21205638
    284543 4v5o:B6 (3.93) BS01 rna ? GO:0003735 ... Q22CK0 21205638
    284544 4v5o:B6 (3.93) BS02 ZN ? GO:0003735 ... Q22CK0 21205638
    284545 4v5o:B7 (3.93) BS01 rna ? GO:0003723 ... Q24F70 21205638
    284546 4v5o:B8 (3.93) BS01 rna N/A N/A N/A 21205638
    284547 4v5o:B9 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284548 4v5o:B9 (3.93) BS02 ZN N/A GO:0003735 ... N/A 21205638
    284549 4v5o:BB (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284550 4v5o:BC (3.93) BS01 rna ? GO:0003723 ... Q22AV9 21205638
    284551 4v5o:BD (3.93) BS01 rna ? GO:0003723 ... Q230V2 21205638
    284552 4v5o:BE (3.93) BS01 rna ? GO:0003723 ... Q23KG1 21205638
    284553 4v5o:BF (3.93) BS01 rna N/A GO:0003743 ... N/A 21205638
    284554 4v5o:BG (3.93) BS01 rna ? GO:0003723 ... Q22WU7 21205638
    284555 4v5o:BH (3.93) BS01 rna ? GO:0003735 ... Q238Q8 21205638
    284556 4v5o:BI (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284557 4v5o:BJ (3.93) BS01 rna ? GO:0003735 ... Q22DC6 21205638
    284558 4v5o:BK (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284559 4v5o:BL (3.93) BS01 rna ? GO:0003735 ... P06147 21205638
    284560 4v5o:BM (3.93) BS01 rna N/A GO:0003676 ... N/A 21205638
    284561 4v5o:BN (3.93) BS01 rna ? GO:0002181 ... Q22MB0 21205638
    284562 4v5o:BN (3.93) BS02 ZN ? GO:0002181 ... Q22MB0 21205638
    284563 4v5o:BO (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284564 4v5o:BP (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    284565 4v5o:BQ (3.93) BS01 rna ? GO:0003735 ... Q22B78 21205638
    284566 4v5o:BR (3.93) BS01 rna ? GO:0006417 ... Q24D42 21205638
    284567 4v5o:BS (3.93) BS01 rna N/A GO:0003723 ... N/A 21205638
    284568 4v5o:BT (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284569 4v5o:BU (3.93) BS01 rna ? GO:0005840 ... Q22W26 21205638
    284570 4v5o:BV (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284571 4v5o:BW (3.93) BS01 rna ? GO:0003723 ... P0C233 21205638
    284572 4v5o:BX (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284573 4v5o:BY (3.93) BS01 rna ? GO:0003735 ... A4VD76 21205638
    284574 4v5o:BZ (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    284575 4v5p:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    284576 4v5p:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    284577 4v5p:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    284578 4v5p:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    284579 4v5p:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    284580 4v5p:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    284581 4v5p:AG (3.1) BS01 rna ? GO:0000049 ... P17291 21378964
    284582 4v5p:AG (3.1) BS02 rna ? GO:0000049 ... P17291 21378964
    284583 4v5p:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    284584 4v5p:AI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    284585 4v5p:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    284586 4v5p:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    284587 4v5p:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    284588 4v5p:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    284589 4v5p:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    284590 4v5p:AM (3.1) BS03 rna ? GO:0000049 ... P80377 21378964
    284591 4v5p:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    284592 4v5p:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    284593 4v5p:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    284594 4v5p:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    284595 4v5p:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    284596 4v5p:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    284597 4v5p:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    284598 4v5p:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    284599 4v5p:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    284600 4v5p:AZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).