SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    285001 4v5r:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    285002 4v5r:DX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 21378964
    285003 4v5r:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    285004 4v5r:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    285005 4v5r:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    285006 4v5s:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    285007 4v5s:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    285008 4v5s:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    285009 4v5s:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    285010 4v5s:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    285011 4v5s:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    285012 4v5s:AG (3.1) BS01 rna ? GO:0000049 ... P17291 21378964
    285013 4v5s:AG (3.1) BS02 rna ? GO:0000049 ... P17291 21378964
    285014 4v5s:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    285015 4v5s:AI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    285016 4v5s:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    285017 4v5s:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    285018 4v5s:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    285019 4v5s:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    285020 4v5s:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    285021 4v5s:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    285022 4v5s:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    285023 4v5s:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    285024 4v5s:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    285025 4v5s:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    285026 4v5s:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    285027 4v5s:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    285028 4v5s:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    285029 4v5s:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    285030 4v5s:AZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    285031 4v5s:AZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    285032 4v5s:AZ (3.1) BS03 GDP ? GO:0003723 ... Q5SHN6 21378964
    285033 4v5s:AZ (3.1) BS04 KIR ? GO:0003723 ... Q5SHN6 21378964
    285034 4v5s:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    285035 4v5s:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    285036 4v5s:B0 (3.1) BS03 rna ? GO:0003735 ... P60493 21378964
    285037 4v5s:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    285038 4v5s:B1 (3.1) BS02 rna ? GO:0003735 ... P60494 21378964
    285039 4v5s:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    285040 4v5s:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    285041 4v5s:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21378964
    285042 4v5s:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    285043 4v5s:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    285044 4v5s:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    285045 4v5s:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    285046 4v5s:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    285047 4v5s:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    285048 4v5s:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    285049 4v5s:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    285050 4v5s:BD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    285051 4v5s:BD (3.1) BS02 rna ? GO:0002181 ... P60405 21378964
    285052 4v5s:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    285053 4v5s:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    285054 4v5s:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    285055 4v5s:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    285056 4v5s:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    285057 4v5s:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    285058 4v5s:BJ (3.1) BS01 rna N/A N/A N/A 21378964
    285059 4v5s:BK (3.1) BS01 rna N/A N/A N/A 21378964
    285060 4v5s:BN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    285061 4v5s:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    285062 4v5s:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    285063 4v5s:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    285064 4v5s:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    285065 4v5s:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    285066 4v5s:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    285067 4v5s:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    285068 4v5s:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    285069 4v5s:BT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    285070 4v5s:BT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    285071 4v5s:BU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    285072 4v5s:BV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    285073 4v5s:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    285074 4v5s:BX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 21378964
    285075 4v5s:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    285076 4v5s:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    285077 4v5s:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    285078 4v5s:CB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    285079 4v5s:CC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    285080 4v5s:CD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    285081 4v5s:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    285082 4v5s:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    285083 4v5s:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    285084 4v5s:CG (3.1) BS01 rna ? GO:0000049 ... P17291 21378964
    285085 4v5s:CG (3.1) BS02 rna ? GO:0000049 ... P17291 21378964
    285086 4v5s:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    285087 4v5s:CI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    285088 4v5s:CI (3.1) BS02 rna ? GO:0000049 ... P80374 21378964
    285089 4v5s:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    285090 4v5s:CK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    285091 4v5s:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    285092 4v5s:CM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    285093 4v5s:CM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    285094 4v5s:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    285095 4v5s:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    285096 4v5s:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    285097 4v5s:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    285098 4v5s:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    285099 4v5s:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    285100 4v5s:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    285101 4v5s:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    285102 4v5s:CT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    285103 4v5s:CZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    285104 4v5s:CZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    285105 4v5s:CZ (3.1) BS03 rna ? GO:0003723 ... Q5SHN6 21378964
    285106 4v5s:CZ (3.1) BS04 GDP ? GO:0003723 ... Q5SHN6 21378964
    285107 4v5s:CZ (3.1) BS05 KIR ? GO:0003723 ... Q5SHN6 21378964
    285108 4v5s:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    285109 4v5s:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    285110 4v5s:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 21378964
    285111 4v5s:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    285112 4v5s:D1 (3.1) BS02 rna ? GO:0003735 ... P60494 21378964
    285113 4v5s:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    285114 4v5s:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    285115 4v5s:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    285116 4v5s:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    285117 4v5s:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    285118 4v5s:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    285119 4v5s:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    285120 4v5s:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    285121 4v5s:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    285122 4v5s:DC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    285123 4v5s:DD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    285124 4v5s:DD (3.1) BS02 rna ? GO:0002181 ... P60405 21378964
    285125 4v5s:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    285126 4v5s:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    285127 4v5s:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    285128 4v5s:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    285129 4v5s:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    285130 4v5s:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    285131 4v5s:DJ (3.1) BS01 rna N/A N/A N/A 21378964
    285132 4v5s:DK (3.1) BS01 rna N/A N/A N/A 21378964
    285133 4v5s:DN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    285134 4v5s:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    285135 4v5s:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    285136 4v5s:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    285137 4v5s:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    285138 4v5s:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    285139 4v5s:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    285140 4v5s:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    285141 4v5s:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    285142 4v5s:DT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    285143 4v5s:DT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    285144 4v5s:DU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    285145 4v5s:DV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    285146 4v5s:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    285147 4v5s:DX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 21378964
    285148 4v5s:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    285149 4v5s:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    285150 4v5s:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    285151 4v5v:AA (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285152 4v5v:AB (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285153 4v5v:AC (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285154 4v5v:AD (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285155 4v5v:AE (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285156 4v5v:AF (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285157 4v5v:AG (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285158 4v5v:AH (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285159 4v5v:AI (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285160 4v5v:AJ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285161 4v5v:AL (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285162 4v5v:AN (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285163 4v5v:AO (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285164 4v5v:AP (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285165 4v5v:AQ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285166 4v5v:AR (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285167 4v5v:AS (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285168 4v5v:AT (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285169 4v5v:AU (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285170 4v5v:AV (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285171 4v5v:BA (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285172 4v5v:BB (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285173 4v5v:BC (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285174 4v5v:BD (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285175 4v5v:BE (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285176 4v5v:BF (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285177 4v5v:BG (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285178 4v5v:BH (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285179 4v5v:BI (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285180 4v5v:BJ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285181 4v5v:BK (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285182 4v5v:BL (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285183 4v5v:BM (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285184 4v5v:BN (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285185 4v5v:BO (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285186 4v5v:BP (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285187 4v5v:BQ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285188 4v5v:BW (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285189 4v5v:BY (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285190 4v5v:BZ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    285191 4v5y:AB (4.45) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    285192 4v5y:AC (4.45) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    285193 4v5y:AD (4.45) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    285194 4v5y:AE (4.45) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    285195 4v5y:AF (4.45) BS01 rna ? GO:0002181 ... P02358 17660832
    285196 4v5y:AG (4.45) BS01 rna ? GO:0000028 ... P02359 17660832
    285197 4v5y:AH (4.45) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    285198 4v5y:AI (4.45) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    285199 4v5y:AJ (4.45) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    285200 4v5y:AK (4.45) BS01 rna ? GO:0002181 ... P0A7R9 17660832

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).