SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    285201 4v5y:AL (4.45) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    285202 4v5y:AM (4.45) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    285203 4v5y:AN (4.45) BS01 rna ? GO:0000028 ... P0AG59 17660832
    285204 4v5y:AO (4.45) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    285205 4v5y:AO (4.45) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    285206 4v5y:AP (4.45) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    285207 4v5y:AQ (4.45) BS01 rna ? GO:0000028 ... P0AG63 17660832
    285208 4v5y:AR (4.45) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    285209 4v5y:AS (4.45) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    285210 4v5y:AT (4.45) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    285211 4v5y:AU (4.45) BS01 rna ? GO:0000028 ... P68679 17660832
    285212 4v5y:B0 (4.45) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    285213 4v5y:B1 (4.45) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    285214 4v5y:B2 (4.45) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    285215 4v5y:B3 (4.45) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    285216 4v5y:B4 (4.45) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    285217 4v5y:B4 (4.45) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    285218 4v5y:B6 (4.45) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    285219 4v5y:BC (4.45) BS01 rna ? GO:0000027 ... P60422 17660832
    285220 4v5y:BD (4.45) BS01 rna ? GO:0000027 ... P60438 17660832
    285221 4v5y:BE (4.45) BS01 rna ? GO:0001070 ... P60723 17660832
    285222 4v5y:BF (4.45) BS01 rna ? GO:0000027 ... P62399 17660832
    285223 4v5y:BF (4.45) BS02 rna ? GO:0000027 ... P62399 17660832
    285224 4v5y:BG (4.45) BS01 rna ? GO:0000027 ... P0AG55 17660832
    285225 4v5y:BH (4.45) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    285226 4v5y:BH (4.45) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    285227 4v5y:BI (4.45) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    285228 4v5y:BJ (4.45) BS01 rna ? GO:0002181 ... P0AA10 17660832
    285229 4v5y:BK (4.45) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    285230 4v5y:BL (4.45) BS01 rna ? GO:0002181 ... P02413 17660832
    285231 4v5y:BM (4.45) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    285232 4v5y:BM (4.45) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    285233 4v5y:BN (4.45) BS01 rna ? GO:0000027 ... P0AG44 17660832
    285234 4v5y:BO (4.45) BS01 rna ? GO:0002181 ... P0C018 17660832
    285235 4v5y:BO (4.45) BS02 rna ? GO:0002181 ... P0C018 17660832
    285236 4v5y:BP (4.45) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    285237 4v5y:BP (4.45) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    285238 4v5y:BQ (4.45) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    285239 4v5y:BR (4.45) BS01 rna ? GO:0002181 ... P0AG48 17660832
    285240 4v5y:BS (4.45) BS01 rna ? GO:0002181 ... P61175 17660832
    285241 4v5y:BT (4.45) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    285242 4v5y:BU (4.45) BS01 rna ? GO:0000027 ... P60624 17660832
    285243 4v5y:BV (4.45) BS01 rna ? GO:0000027 ... P68919 17660832
    285244 4v5y:BV (4.45) BS02 rna ? GO:0000027 ... P68919 17660832
    285245 4v5y:BW (4.45) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    285246 4v5y:BW (4.45) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    285247 4v5y:BX (4.45) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    285248 4v5y:BY (4.45) BS01 rna ? GO:0000027 ... P0AG51 17660832
    285249 4v5y:BY (4.45) BS02 rna ? GO:0000027 ... P0AG51 17660832
    285250 4v5y:BZ (4.45) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    285251 4v5y:CB (4.45) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    285252 4v5y:CC (4.45) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    285253 4v5y:CD (4.45) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    285254 4v5y:CE (4.45) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    285255 4v5y:CF (4.45) BS01 rna ? GO:0002181 ... P02358 17660832
    285256 4v5y:CG (4.45) BS01 rna ? GO:0000028 ... P02359 17660832
    285257 4v5y:CH (4.45) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    285258 4v5y:CI (4.45) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    285259 4v5y:CJ (4.45) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    285260 4v5y:CK (4.45) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    285261 4v5y:CL (4.45) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    285262 4v5y:CM (4.45) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    285263 4v5y:CN (4.45) BS01 rna ? GO:0000028 ... P0AG59 17660832
    285264 4v5y:CO (4.45) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    285265 4v5y:CO (4.45) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    285266 4v5y:CP (4.45) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    285267 4v5y:CQ (4.45) BS01 rna ? GO:0000028 ... P0AG63 17660832
    285268 4v5y:CR (4.45) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    285269 4v5y:CS (4.45) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    285270 4v5y:CT (4.45) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    285271 4v5y:CU (4.45) BS01 rna ? GO:0000028 ... P68679 17660832
    285272 4v5y:D0 (4.45) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    285273 4v5y:D1 (4.45) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    285274 4v5y:D2 (4.45) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    285275 4v5y:D3 (4.45) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    285276 4v5y:D4 (4.45) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    285277 4v5y:D4 (4.45) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    285278 4v5y:D6 (4.45) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    285279 4v5y:DC (4.45) BS01 rna ? GO:0000027 ... P60422 17660832
    285280 4v5y:DD (4.45) BS01 rna ? GO:0000027 ... P60438 17660832
    285281 4v5y:DE (4.45) BS01 rna ? GO:0001070 ... P60723 17660832
    285282 4v5y:DF (4.45) BS01 rna ? GO:0000027 ... P62399 17660832
    285283 4v5y:DF (4.45) BS02 rna ? GO:0000027 ... P62399 17660832
    285284 4v5y:DG (4.45) BS01 rna ? GO:0000027 ... P0AG55 17660832
    285285 4v5y:DH (4.45) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    285286 4v5y:DI (4.45) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    285287 4v5y:DJ (4.45) BS01 rna ? GO:0002181 ... P0AA10 17660832
    285288 4v5y:DK (4.45) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    285289 4v5y:DL (4.45) BS01 rna ? GO:0002181 ... P02413 17660832
    285290 4v5y:DM (4.45) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    285291 4v5y:DM (4.45) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    285292 4v5y:DN (4.45) BS01 rna ? GO:0000027 ... P0AG44 17660832
    285293 4v5y:DO (4.45) BS01 rna ? GO:0002181 ... P0C018 17660832
    285294 4v5y:DO (4.45) BS02 rna ? GO:0002181 ... P0C018 17660832
    285295 4v5y:DP (4.45) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    285296 4v5y:DP (4.45) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    285297 4v5y:DQ (4.45) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    285298 4v5y:DR (4.45) BS01 rna ? GO:0002181 ... P0AG48 17660832
    285299 4v5y:DS (4.45) BS01 rna ? GO:0002181 ... P61175 17660832
    285300 4v5y:DT (4.45) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    285301 4v5y:DU (4.45) BS01 rna ? GO:0000027 ... P60624 17660832
    285302 4v5y:DV (4.45) BS01 rna ? GO:0000027 ... P68919 17660832
    285303 4v5y:DW (4.45) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    285304 4v5y:DW (4.45) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    285305 4v5y:DX (4.45) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    285306 4v5y:DY (4.45) BS01 rna ? GO:0000027 ... P0AG51 17660832
    285307 4v5y:DY (4.45) BS02 rna ? GO:0000027 ... P0AG51 17660832
    285308 4v5y:DZ (4.45) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    285309 4v5z:Aa (8.7) BS01 rna N/A GO:0043022 ... N/A 18400176
    285310 4v5z:Ac (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    285311 4v5z:Ae (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    285312 4v5z:Ag (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    285313 4v5z:Ah (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285314 4v5z:Ai (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285315 4v5z:Ak (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285316 4v5z:Al (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285317 4v5z:Am (8.7) BS01 rna N/A GO:0003676 ... N/A 18400176
    285318 4v5z:An (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285319 4v5z:An (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    285320 4v5z:Ao (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285321 4v5z:Aq (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285322 4v5z:As (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    285323 4v5z:As (8.7) BS02 rna N/A GO:0003723 ... N/A 18400176
    285324 4v5z:B2 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285325 4v5z:B3 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285326 4v5z:B3 (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    285327 4v5z:B4 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285328 4v5z:B4 (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    285329 4v5z:B5 (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    285330 4v5z:B6 (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    285331 4v5z:B9 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285332 4v5z:Ba (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    285333 4v5z:Bb (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285334 4v5z:Bc (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285335 4v5z:Bd (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285336 4v5z:Bd (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    285337 4v5z:Be (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285338 4v5z:Bf (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    285339 4v5z:Bh (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285340 4v5z:Bi (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285341 4v5z:Bj (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285342 4v5z:Bk (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285343 4v5z:Bk (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    285344 4v5z:Bl (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285345 4v5z:Bl (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    285346 4v5z:Bl (8.7) BS03 rna N/A GO:0003735 ... N/A 18400176
    285347 4v5z:Bm (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285348 4v5z:Bn (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285349 4v5z:Bn (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    285350 4v5z:Bn (8.7) BS03 rna N/A GO:0003735 ... N/A 18400176
    285351 4v5z:Bo (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285352 4v5z:Bo (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    285353 4v5z:Bp (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    285354 4v5z:Bp (8.7) BS02 rna N/A GO:0003723 ... N/A 18400176
    285355 4v5z:Bp (8.7) BS03 rna N/A GO:0003723 ... N/A 18400176
    285356 4v5z:Bp (8.7) BS04 peptide N/A GO:0003723 ... N/A 18400176
    285357 4v5z:Bq (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285358 4v5z:Br (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285359 4v5z:Bs (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285360 4v5z:Bv (8.7) BS01 rna N/A GO:0000463 ... N/A 18400176
    285361 4v5z:Bv (8.7) BS02 peptide N/A GO:0000463 ... N/A 18400176
    285362 4v5z:Bw (8.7) BS01 rna N/A GO:0000463 ... N/A 18400176
    285363 4v5z:Bx (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285364 4v5z:By (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285365 4v5z:Bz (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    285366 4v61:AB (9.4) BS01 rna ? GO:0003735 ... P08242 18042701
    285367 4v61:AC (9.4) BS01 rna ? GO:0003723 ... P09595 18042701
    285368 4v61:AD (9.4) BS01 rna ? GO:0003723 ... P13788 18042701
    285369 4v61:AE (9.4) BS01 rna ? GO:0003723 ... Q9ST69 18042701
    285370 4v61:AF (9.4) BS01 rna ? GO:0003735 ... P82403 18042701
    285371 4v61:AG (9.4) BS01 rna ? GO:0000028 ... P82129 18042701
    285372 4v61:AH (9.4) BS01 rna ? GO:0003735 ... P09597 18042701
    285373 4v61:AI (9.4) BS01 rna ? GO:0000312 ... P82278 18042701
    285374 4v61:AJ (9.4) BS01 rna N/A GO:0003723 ... N/A 18042701
    285375 4v61:AK (9.4) BS01 rna ? GO:0003735 ... P06506 18042701
    285376 4v61:AL (9.4) BS01 rna ? GO:0003735 ... P62128 18042701
    285377 4v61:AM (9.4) BS01 rna ? GO:0003676 ... P82163 18042701
    285378 4v61:AN (9.4) BS01 rna ? GO:0003735 ... P06507 18042701
    285379 4v61:AO (9.4) BS01 rna ? GO:0003735 ... Q9M3I4 18042701
    285380 4v61:AO (9.4) BS02 rna ? GO:0003735 ... Q9M3I4 18042701
    285381 4v61:AP (9.4) BS01 rna ? GO:0003735 ... P28807 18042701
    285382 4v61:AQ (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    285383 4v61:AR (9.4) BS01 rna ? GO:0003735 ... Q9M3K7 18042701
    285384 4v61:AS (9.4) BS01 rna ? GO:0000028 ... P06508 18042701
    285385 4v61:AT (9.4) BS01 rna N/A GO:0003723 ... N/A 18042701
    285386 4v61:AU (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    285387 4v61:B2 (9.4) BS01 rna ? GO:0003735 ... P28804 18042701
    285388 4v61:B2 (9.4) BS02 rna ? GO:0003735 ... P28804 18042701
    285389 4v61:B3 (9.4) BS01 rna ? GO:0003735 ... P28805 18042701
    285390 4v61:B4 (9.4) BS01 rna ? GO:0003735 ... P82244 18042701
    285391 4v61:B5 (9.4) BS01 rna ? GO:0003735 ... P23326 18042701
    285392 4v61:B6 (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    285393 4v61:BD (9.4) BS01 rna ? GO:0003723 ... Q9LE95 18042701
    285394 4v61:BE (9.4) BS01 rna ? GO:0003723 ... P06509 18042701
    285395 4v61:BE (9.4) BS02 rna ? GO:0003723 ... P06509 18042701
    285396 4v61:BF (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    285397 4v61:BF (9.4) BS02 rna N/A GO:0003735 ... N/A 18042701
    285398 4v61:BG (9.4) BS01 rna ? GO:0003735 ... O49937 18042701
    285399 4v61:BH (9.4) BS01 rna ? GO:0003735 ... P82192 18042701
    285400 4v61:BH (9.4) BS02 rna ? GO:0003735 ... P82192 18042701

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).