SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    287201 4v6g:CP (3.5) BS02 rna ? GO:0000049 ... P80377 20400952
    287202 4v6g:CP (3.5) BS03 rna ? GO:0000049 ... P80377 20400952
    287203 4v6g:CP (3.5) BS04 MG ? GO:0000049 ... P80377 20400952
    287204 4v6g:CP (3.5) BS05 MG ? GO:0000049 ... P80377 20400952
    287205 4v6g:CQ (3.5) BS01 rna ? GO:0003735 ... P0DOY6 20400952
    287206 4v6g:CQ (3.5) BS02 MG ? GO:0003735 ... P0DOY6 20400952
    287207 4v6g:CQ (3.5) BS03 ZN ? GO:0003735 ... P0DOY6 20400952
    287208 4v6g:CR (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 20400952
    287209 4v6g:CR (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 20400952
    287210 4v6g:CS (3.5) BS01 rna N/A GO:0003735 ... N/A 20400952
    287211 4v6g:CT (3.5) BS01 rna ? GO:0003735 ... P0DOY7 20400952
    287212 4v6g:CU (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 20400952
    287213 4v6g:CV (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 20400952
    287214 4v6g:CW (3.5) BS01 rna ? GO:0003723 ... P80380 20400952
    287215 4v6g:CW (3.5) BS02 MG ? GO:0003723 ... P80380 20400952
    287216 4v6g:CW (3.5) BS03 MG ? GO:0003723 ... P80380 20400952
    287217 4v6g:D0 (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 20400952
    287218 4v6g:D0 (3.5) BS02 MG ? GO:0003735 ... Q9Z9H5 20400952
    287219 4v6g:D1 (3.5) BS01 rna ? GO:0000027 ... P60491 20400952
    287220 4v6g:D1 (3.5) BS02 MG ? GO:0000027 ... P60491 20400952
    287221 4v6g:D1 (3.5) BS03 MG ? GO:0000027 ... P60491 20400952
    287222 4v6g:D2 (3.5) BS01 rna ? GO:0003723 ... P60492 20400952
    287223 4v6g:D2 (3.5) BS02 MG ? GO:0003723 ... P60492 20400952
    287224 4v6g:D3 (3.5) BS01 rna ? GO:0003735 ... P60493 20400952
    287225 4v6g:D3 (3.5) BS02 rna ? GO:0003735 ... P60493 20400952
    287226 4v6g:D3 (3.5) BS03 MG ? GO:0003735 ... P60493 20400952
    287227 4v6g:D4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 20400952
    287228 4v6g:D4 (3.5) BS02 rna ? GO:0003735 ... Q5SJE1 20400952
    287229 4v6g:D5 (3.5) BS01 rna ? GO:0003735 ... P80339 20400952
    287230 4v6g:D6 (3.5) BS01 rna ? GO:0000049 ... P35871 20400952
    287231 4v6g:D6 (3.5) BS02 MG ? GO:0000049 ... P35871 20400952
    287232 4v6g:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 20400952
    287233 4v6g:D8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 20400952
    287234 4v6g:DD (3.5) BS01 rna ? GO:0002181 ... P60405 20400952
    287235 4v6g:DD (3.5) BS02 MG ? GO:0002181 ... P60405 20400952
    287236 4v6g:DE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 20400952
    287237 4v6g:DF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 20400952
    287238 4v6g:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 20400952
    287239 4v6g:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 20400952
    287240 4v6g:DG (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 20400952
    287241 4v6g:DG (3.5) BS04 MG ? GO:0000049 ... Q5SHQ0 20400952
    287242 4v6g:DG (3.5) BS05 MG ? GO:0000049 ... Q5SHQ0 20400952
    287243 4v6g:DH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 20400952
    287244 4v6g:DH (3.5) BS02 MG ? GO:0002181 ... P0DOY8 20400952
    287245 4v6g:DH (3.5) BS03 MG ? GO:0002181 ... P0DOY8 20400952
    287246 4v6g:DK (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 20400952
    287247 4v6g:DM (3.5) BS01 rna ? GO:0003729 ... P60488 20400952
    287248 4v6g:DN (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 20400952
    287249 4v6g:DN (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 20400952
    287250 4v6g:DO (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 20400952
    287251 4v6g:DO (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 20400952
    287252 4v6g:DP (3.5) BS01 rna ? GO:0000049 ... P60489 20400952
    287253 4v6g:DP (3.5) BS02 rna ? GO:0000049 ... P60489 20400952
    287254 4v6g:DP (3.5) BS03 rna ? GO:0000049 ... P60489 20400952
    287255 4v6g:DP (3.5) BS04 MG ? GO:0000049 ... P60489 20400952
    287256 4v6g:DQ (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 20400952
    287257 4v6g:DQ (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 20400952
    287258 4v6g:DR (3.5) BS01 rna ? GO:0003735 ... P60490 20400952
    287259 4v6g:DR (3.5) BS02 rna ? GO:0003735 ... P60490 20400952
    287260 4v6g:DS (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 20400952
    287261 4v6g:DT (3.5) BS01 rna ? GO:0003735 ... Q5SHP0 20400952
    287262 4v6g:DU (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 20400952
    287263 4v6g:DU (3.5) BS02 MG ? GO:0003723 ... Q5SHP9 20400952
    287264 4v6g:DV (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 20400952
    287265 4v6g:DW (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 20400952
    287266 4v6g:DW (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 20400952
    287267 4v6g:DX (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 20400952
    287268 4v6g:DX (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 20400952
    287269 4v6g:DZ (3.5) BS01 rna ? GO:0003735 ... P60494 20400952
    287270 4v6g:DZ (3.5) BS02 MG ? GO:0003735 ... P60494 20400952
    287271 4v6i:AA (8.8) BS01 rna ? GO:0000028 ... P32905 20980660
    287272 4v6i:AB (8.8) BS01 rna ? GO:0000054 ... P05750 20980660
    287273 4v6i:AC (8.8) BS01 rna ? GO:0000462 ... O13516 20980660
    287274 4v6i:AD (8.8) BS01 rna N/A GO:0003723 ... N/A 20980660
    287275 4v6i:AE (8.8) BS01 rna ? GO:0000054 ... P25443 20980660
    287276 4v6i:AF (8.8) BS01 rna ? GO:0000028 ... P26783 20980660
    287277 4v6i:AG (8.8) BS01 rna N/A N/A N/A 20980660
    287278 4v6i:AH (8.8) BS01 rna ? GO:0002181 ... P0C0W1 20980660
    287279 4v6i:AI (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287280 4v6i:AJ (8.8) BS01 rna ? GO:0000462 ... P38701 20980660
    287281 4v6i:AK (8.8) BS01 rna ? GO:0000028 ... P06367 20980660
    287282 4v6i:AL (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287283 4v6i:AM (8.8) BS01 rna N/A GO:0003676 ... N/A 20980660
    287284 4v6i:AN (8.8) BS01 rna ? GO:0002181 ... P41057 20980660
    287285 4v6i:AO (8.8) BS01 rna ? GO:0000462 ... P05756 20980660
    287286 4v6i:AO (8.8) BS02 rna ? GO:0000462 ... P05756 20980660
    287287 4v6i:AP (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287288 4v6i:AQ (8.8) BS01 rna ? GO:0000028 ... P02407 20980660
    287289 4v6i:AR (8.8) BS01 rna ? GO:0000028 ... Q01855 20980660
    287290 4v6i:AS (8.8) BS01 rna ? GO:0000028 ... P07280 20980660
    287291 4v6i:AT (8.8) BS01 rna ? GO:0000447 ... P0C0V8 20980660
    287292 4v6i:AU (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287293 4v6i:AV (8.8) BS01 rna ? GO:0002181 ... Q3E792 20980660
    287294 4v6i:AW (8.8) BS01 rna N/A N/A N/A 20980660
    287295 4v6i:AX (8.8) BS01 rna ? GO:0000028 ... P35997 20980660
    287296 4v6i:AZ (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287297 4v6i:Aa (8.8) BS01 rna ? GO:0001965 ... P38011 20980660
    287298 4v6i:Ab (8.8) BS01 rna N/A N/A N/A 20980660
    287299 4v6i:BA (8.8) BS01 rna N/A GO:0003723 ... N/A 20980660
    287300 4v6i:BB (8.8) BS01 peptide N/A GO:0003735 ... N/A 20980660
    287301 4v6i:BB (8.8) BS02 rna N/A GO:0003735 ... N/A 20980660
    287302 4v6i:BC (8.8) BS01 rna ? GO:0000027 ... P14126 20980660
    287303 4v6i:BD (8.8) BS01 rna ? GO:0002181 ... P10664 20980660
    287304 4v6i:BD (8.8) BS02 rna ? GO:0002181 ... P10664 20980660
    287305 4v6i:BE (8.8) BS01 rna ? GO:0000027 ... P0C0W9 20980660
    287306 4v6i:BE (8.8) BS02 rna ? GO:0000027 ... P0C0W9 20980660
    287307 4v6i:BE (8.8) BS03 rna ? GO:0000027 ... P0C0W9 20980660
    287308 4v6i:BF (8.8) BS01 rna ? GO:0002181 ... P05738 20980660
    287309 4v6i:BG (8.8) BS01 rna ? GO:0000027 ... Q02326 20980660
    287310 4v6i:BH (8.8) BS01 peptide ? GO:0000470 ... P17076 20980660
    287311 4v6i:BH (8.8) BS02 rna ? GO:0000470 ... P17076 20980660
    287312 4v6i:BH (8.8) BS03 rna ? GO:0000470 ... P17076 20980660
    287313 4v6i:BI (8.8) BS01 rna ? GO:0000027 ... P41805 20980660
    287314 4v6i:BI (8.8) BS02 rna ? GO:0000027 ... P41805 20980660
    287315 4v6i:BI (8.8) BS03 rna ? GO:0000027 ... P41805 20980660
    287316 4v6i:BJ (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287317 4v6i:BK (8.8) BS01 rna ? GO:0000470 ... P26784 20980660
    287318 4v6i:BL (8.8) BS01 rna N/A N/A N/A 20980660
    287319 4v6i:BM (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287320 4v6i:BM (8.8) BS02 rna N/A GO:0003735 ... N/A 20980660
    287321 4v6i:BN (8.8) BS01 rna ? GO:0000027 ... P36105 20980660
    287322 4v6i:BO (8.8) BS01 rna ? GO:0002181 ... P02406 20980660
    287323 4v6i:BP (8.8) BS01 rna ? GO:0002181 ... P05748 20980660
    287324 4v6i:BP (8.8) BS02 rna ? GO:0002181 ... P05748 20980660
    287325 4v6i:BQ (8.8) BS01 rna ? GO:0000027 ... P26321 20980660
    287326 4v6i:BQ (8.8) BS02 rna ? GO:0000027 ... P26321 20980660
    287327 4v6i:BR (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287328 4v6i:BS (8.8) BS01 rna ? GO:0002181 ... Q943F3 20980660
    287329 4v6i:BS (8.8) BS02 rna ? GO:0002181 ... Q943F3 20980660
    287330 4v6i:BT (8.8) BS01 rna N/A GO:0003723 ... N/A 20980660
    287331 4v6i:BT (8.8) BS02 rna N/A GO:0003723 ... N/A 20980660
    287332 4v6i:BU (8.8) BS01 rna ? GO:0002181 ... Q02753 20980660
    287333 4v6i:BU (8.8) BS02 rna ? GO:0002181 ... Q02753 20980660
    287334 4v6i:BV (8.8) BS01 rna ? GO:0000448 ... P05740 20980660
    287335 4v6i:BV (8.8) BS02 rna ? GO:0000448 ... P05740 20980660
    287336 4v6i:BW (8.8) BS01 rna ? GO:0002181 ... P05749 20980660
    287337 4v6i:BX (8.8) BS01 rna ? GO:0000027 ... P04456 20980660
    287338 4v6i:BX (8.8) BS02 rna ? GO:0000027 ... P04456 20980660
    287339 4v6i:BY (8.8) BS01 rna ? GO:0002181 ... P05743 20980660
    287340 4v6i:BY (8.8) BS02 rna ? GO:0002181 ... P05743 20980660
    287341 4v6i:BZ (8.8) BS01 rna ? GO:0002181 ... P04449 20980660
    287342 4v6i:Ba (8.8) BS01 rna ? GO:0002181 ... P0C2H6 20980660
    287343 4v6i:Bc (8.8) BS01 rna N/A GO:0000463 ... N/A 20980660
    287344 4v6i:Bc (8.8) BS02 rna N/A GO:0000463 ... N/A 20980660
    287345 4v6i:Be (8.8) BS01 rna ? GO:0000463 ... P05737 20980660
    287346 4v6i:Be (8.8) BS02 rna ? GO:0000463 ... P05737 20980660
    287347 4v6i:Bf (8.8) BS01 rna ? GO:0002181 ... P14120 20980660
    287348 4v6i:Bg (8.8) BS01 rna ? GO:0002181 ... P0C2H8 20980660
    287349 4v6i:Bh (8.8) BS01 rna ? GO:0002181 ... P38061 20980660
    287350 4v6i:Bi (8.8) BS01 rna ? GO:0002181 ... P87262 20980660
    287351 4v6i:Bj (8.8) BS01 rna ? GO:0000027 ... P05744 20980660
    287352 4v6i:Bk (8.8) BS01 rna ? GO:0002181 ... P05745 20980660
    287353 4v6i:Bl (8.8) BS01 rna ? GO:0000448 ... P49166 20980660
    287354 4v6i:Bl (8.8) BS02 rna ? GO:0000448 ... P49166 20980660
    287355 4v6i:Bm (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287356 4v6i:Bn (8.8) BS01 rna ? GO:0002181 ... P49167 20980660
    287357 4v6i:Bo (8.8) BS01 rna ? GO:0002181 ... P04650 20980660
    287358 4v6i:Bo (8.8) BS02 rna ? GO:0002181 ... P04650 20980660
    287359 4v6i:Bp (8.8) BS01 rna ? GO:0003735 ... P0CH08 20980660
    287360 4v6i:Br (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    287361 4v6i:Bs (8.8) BS01 rna ? GO:0000027 ... P05317 20980660
    287362 4v6k:AC (8.25) BS01 rna ? GO:0000027 ... P0A7L0 21378755
    287363 4v6k:AD (8.25) BS01 rna ? GO:0000027 ... P60422 21378755
    287364 4v6k:AE (8.25) BS01 rna ? GO:0000027 ... P60438 21378755
    287365 4v6k:AF (8.25) BS01 rna ? GO:0001070 ... P60723 21378755
    287366 4v6k:AG (8.25) BS01 rna ? GO:0000027 ... P62399 21378755
    287367 4v6k:AG (8.25) BS02 rna ? GO:0000027 ... P62399 21378755
    287368 4v6k:AH (8.25) BS01 rna ? GO:0000027 ... P0AG55 21378755
    287369 4v6k:AI (8.25) BS01 rna ? GO:0002181 ... P0A7R1 21378755
    287370 4v6k:AJ (8.25) BS01 rna ? GO:0000027 ... P0A7J7 21378755
    287371 4v6k:AK (8.25) BS01 rna ? GO:0002181 ... P0AA10 21378755
    287372 4v6k:AL (8.25) BS01 rna ? GO:0002181 ... P0ADY3 21378755
    287373 4v6k:AL (8.25) BS02 rna ? GO:0002181 ... P0ADY3 21378755
    287374 4v6k:AM (8.25) BS01 rna ? GO:0002181 ... P02413 21378755
    287375 4v6k:AN (8.25) BS01 rna ? GO:0000027 ... P0ADY7 21378755
    287376 4v6k:AN (8.25) BS02 rna ? GO:0000027 ... P0ADY7 21378755
    287377 4v6k:AO (8.25) BS01 rna ? GO:0000027 ... P0AG44 21378755
    287378 4v6k:AP (8.25) BS01 rna ? GO:0002181 ... P0C018 21378755
    287379 4v6k:AP (8.25) BS02 rna ? GO:0002181 ... P0C018 21378755
    287380 4v6k:AQ (8.25) BS01 rna ? GO:0000027 ... P0A7K6 21378755
    287381 4v6k:AQ (8.25) BS02 rna ? GO:0000027 ... P0A7K6 21378755
    287382 4v6k:AR (8.25) BS01 rna ? GO:0000027 ... P0A7L3 21378755
    287383 4v6k:AS (8.25) BS01 rna ? GO:0002181 ... P0AG48 21378755
    287384 4v6k:AT (8.25) BS01 rna ? GO:0002181 ... P61175 21378755
    287385 4v6k:AU (8.25) BS01 rna ? GO:0000027 ... P0ADZ0 21378755
    287386 4v6k:AV (8.25) BS01 rna ? GO:0000027 ... P60624 21378755
    287387 4v6k:AW (8.25) BS01 rna ? GO:0000027 ... P68919 21378755
    287388 4v6k:AW (8.25) BS02 rna ? GO:0000027 ... P68919 21378755
    287389 4v6k:AX (8.25) BS01 rna ? GO:0000027 ... P0A7L8 21378755
    287390 4v6k:AX (8.25) BS02 rna ? GO:0000027 ... P0A7L8 21378755
    287391 4v6k:AY (8.25) BS01 rna ? GO:0000027 ... P0A7M2 21378755
    287392 4v6k:AZ (8.25) BS01 rna ? GO:0000027 ... P0A7M6 21378755
    287393 4v6k:Aa (8.25) BS01 rna ? GO:0000027 ... P0AG51 21378755
    287394 4v6k:Ab (8.25) BS01 rna ? GO:0002181 ... P0A7M9 21378755
    287395 4v6k:Ab (8.25) BS02 rna ? GO:0002181 ... P0A7M9 21378755
    287396 4v6k:Ac (8.25) BS01 rna ? GO:0000027 ... P0A7N4 21378755
    287397 4v6k:Ad (8.25) BS01 rna ? GO:0000027 ... P0A7N9 21378755
    287398 4v6k:Ae (8.25) BS01 rna ? GO:0002181 ... P0A7P5 21378755
    287399 4v6k:Af (8.25) BS01 rna ? GO:0002181 ... P0A7Q1 21378755
    287400 4v6k:Ag (8.25) BS01 rna N/A GO:0003735 ... N/A 21378755

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).