SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28601 1kqg:C (2.8) BS02 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    28602 1kqg:C (2.8) BS03 HQO 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    28603 1kqj:A (1.7) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 11900536
    28604 1kqk:A (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... O32220 11922674
    28605 1kqm:A (3.0) BS01 MG ? GO:0003774 ... P24733 12297624
    28606 1kqm:A (3.0) BS02 ANP ? GO:0003774 ... P24733 12297624
    28607 1kqm:B (3.0) BS01 MG ? GO:0005509 ... P13543 12297624
    28608 1kqm:C (3.0) BS01 CA ? GO:0005509 ... P07291 12297624
    28609 1kqn:A (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28610 1kqn:B (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28611 1kqn:C (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28612 1kqn:D (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28613 1kqn:E (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28614 1kqn:F (2.2) BS01 NAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28615 1kqo:A (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28616 1kqo:B (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28617 1kqo:C (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28618 1kqo:D (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28619 1kqo:E (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28620 1kqo:F (2.5) BS01 DND 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28621 1kqp:A (1.03) BS01 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    28622 1kqp:A (1.03) BS02 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    28623 1kqp:A (1.03) BS03 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    28624 1kqp:A (1.03) BS04 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    28625 1kqp:B (1.03) BS01 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    28626 1kqp:B (1.03) BS02 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    28627 1kqp:B (1.03) BS03 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    28628 1kqp:B (1.03) BS04 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    28629 1kqq:A (-1.00) BS01 dna ? GO:0003677 ... Q24573 11867548
    28630 1kqq:A (-1.00) BS02 dna ? GO:0003677 ... Q24573 11867548
    28631 1kqr:A (1.4) BS01 MNA ? GO:0019028 ... P12473 11867517
    28632 1kqs:1 (3.1) BS01 rna ? GO:0003735 ... P22452 11828326
    28633 1kqs:2 (3.1) BS01 rna ? GO:0003735 ... P32411 11828326
    28634 1kqs:2 (3.1) BS02 MG ? GO:0003735 ... P32411 11828326
    28635 1kqs:A (3.1) BS01 rna ? GO:0002181 ... P20276 11828326
    28636 1kqs:B (3.1) BS01 rna ? GO:0003723 ... P20279 11828326
    28637 1kqs:C (3.1) BS01 rna ? GO:0003735 ... P12735 11828326
    28638 1kqs:D (3.1) BS01 rna ? GO:0000049 ... P14124 11828326
    28639 1kqs:D (3.1) BS02 rna ? GO:0000049 ... P14124 11828326
    28640 1kqs:E (3.1) BS01 rna ? GO:0002181 ... P14135 11828326
    28641 1kqs:F (3.1) BS01 rna ? GO:0001682 ... P12743 11828326
    28642 1kqs:H (3.1) BS01 rna ? GO:0003735 ... P60617 11828326
    28643 1kqs:I (3.1) BS01 rna ? GO:0003729 ... P29198 11828326
    28644 1kqs:J (3.1) BS01 rna ? GO:0003735 ... P22450 11828326
    28645 1kqs:K (3.1) BS01 rna ? GO:0003735 ... P12737 11828326
    28646 1kqs:L (3.1) BS01 rna ? GO:0002181 ... P60618 11828326
    28647 1kqs:M (3.1) BS01 rna ? GO:0000027 ... P14123 11828326
    28648 1kqs:M (3.1) BS02 rna ? GO:0000027 ... P14123 11828326
    28649 1kqs:N (3.1) BS01 rna ? GO:0003723 ... P12733 11828326
    28650 1kqs:O (3.1) BS01 rna ? GO:0003723 ... P14119 11828326
    28651 1kqs:P (3.1) BS01 rna ? GO:0003735 ... P12734 11828326
    28652 1kqs:P (3.1) BS02 rna ? GO:0003735 ... P12734 11828326
    28653 1kqs:Q (3.1) BS01 rna ? GO:0002181 ... P10970 11828326
    28654 1kqs:R (3.1) BS01 rna ? GO:0003735 ... P12732 11828326
    28655 1kqs:S (3.1) BS01 rna ? GO:0003723 ... P10972 11828326
    28656 1kqs:S (3.1) BS02 MG ? GO:0003723 ... P10972 11828326
    28657 1kqs:T (3.1) BS01 rna ? GO:0003735 ... P14116 11828326
    28658 1kqs:U (3.1) BS01 rna ? GO:0003735 ... P10971 11828326
    28659 1kqs:V (3.1) BS01 rna ? GO:0000463 ... P14121 11828326
    28660 1kqs:V (3.1) BS02 rna ? GO:0000463 ... P14121 11828326
    28661 1kqs:W (3.1) BS01 rna ? GO:0002181 ... P18138 11828326
    28662 1kqs:X (3.1) BS01 rna ? GO:0000166 ... P12736 11828326
    28663 1kqs:X (3.1) BS02 MG ? GO:0000166 ... P12736 11828326
    28664 1kqs:Y (3.1) BS01 rna ? GO:0003735 ... P60619 11828326
    28665 1kqs:Z (3.1) BS01 rna ? GO:0003723 ... P32410 11828326
    28666 1kqu:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    28667 1kqu:A (2.1) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    28668 1kqu:A (2.1) BS03 BR4 3.1.1.4 GO:0004623 ... P14555 12616631
    28669 1kqw:A (1.38) BS01 RTL ? GO:0005504 ... Q8UVG6 12162964
    28670 1kr2:A (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28671 1kr2:B (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28672 1kr2:C (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28673 1kr2:D (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28674 1kr2:E (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28675 1kr2:F (2.3) BS01 TAD 2.7.7.1
    2.7.7.18
    GO:0000309 ... Q9HAN9 11788603
    28676 1kr3:A (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    28677 1kr3:A (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    28678 1kr3:A (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    28679 1kr3:B (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    28680 1kr3:B (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    28681 1kr3:B (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    28682 1kr5:A (2.1) BS01 SAH 2.1.1.77 GO:0004719 ... P22061 11792715
    28683 1kr6:A (1.8) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28684 1kr6:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28685 1kr6:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28686 1kr6:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28687 1kr6:A (1.8) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    28688 1kr6:A (1.8) BS06 DGL 3.4.24.27 GO:0004222 ... P00800 N/A
    28689 1kr7:A (1.5) BS01 HEM ? GO:0019825 ... O76242 12015154
    28690 1kr7:A (1.5) BS02 OXY ? GO:0019825 ... O76242 12015154
    28691 1krb:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    28692 1krb:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    28693 1krc:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    28694 1krc:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    28695 1kre:A (2.2) BS01 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    28696 1kre:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    28697 1kre:B (2.2) BS02 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    28698 1krf:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    28699 1krf:A (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    28700 1krf:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    28701 1krf:B (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    28702 1krh:A (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    28703 1krh:A (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    28704 1krh:B (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    28705 1krh:B (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    28706 1krj:A (2.0) BS01 K 1.11.1.5 GO:0004601 ... P00431 10608846
    28707 1krj:A (2.0) BS02 HEM 1.11.1.5 GO:0004601 ... P00431 10608846
    28708 1krm:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 12554940
    28709 1krm:A (2.5) BS02 PRH 3.5.4.4 GO:0004000 ... P56658 12554940
    28710 1kro:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28711 1kro:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28712 1kro:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28713 1kro:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28714 1kro:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    28715 1kro:A (1.7) BS06 DTH 3.4.24.27 GO:0004222 ... P00800 N/A
    28716 1krp:A (2.2) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    28717 1krp:A (2.2) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    28718 1krp:A (2.2) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    28719 1krr:A (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    28720 1krr:A (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    28721 1krr:B (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    28722 1krr:B (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    28723 1krr:C (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    28724 1krr:C (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    28725 1kru:A (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28726 1kru:A (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28727 1kru:A (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28728 1kru:A (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28729 1kru:A (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28730 1kru:A (2.8) BS06 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28731 1kru:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28732 1kru:B (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28733 1kru:B (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28734 1kru:B (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28735 1kru:B (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28736 1kru:C (2.8) BS01 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28737 1kru:C (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28738 1kru:C (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28739 1kru:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28740 1kru:C (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    28741 1krv:A (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    28742 1krv:A (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28743 1krv:A (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    28744 1krv:A (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28745 1krv:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28746 1krv:B (2.8) BS02 147 2.3.1.18 GO:0005737 ... P07464 11937062
    28747 1krv:B (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28748 1krv:B (2.8) BS04 147 2.3.1.18 GO:0005737 ... P07464 11937062
    28749 1krv:C (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    28750 1krv:C (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28751 1krv:C (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    28752 1krv:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    28753 1krx:A (-1.00) BS01 BEF ? GO:0000160 ... P41789 12885241
    28754 1ks4:A (2.5) BS01 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    28755 1ks4:A (2.5) BS02 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    28756 1ks4:A (2.5) BS03 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    28757 1ks7:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28758 1ks7:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28759 1ks7:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28760 1ks7:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    28761 1ks7:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    28762 1ks7:A (1.7) BS06 DAS 3.4.24.27 GO:0004222 ... P00800 N/A
    28763 1ksc:A (1.55) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    28764 1ksd:A (1.6) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    28765 1ksf:X (2.6) BS01 MG ? GO:0004176 ... P0ABH9 12205096
    28766 1ksf:X (2.6) BS02 ADP ? GO:0004176 ... P0ABH9 12205096
    28767 1ksf:X (2.6) BS03 ADP ? GO:0004176 ... P0ABH9 12205096
    28768 1ksg:A (2.3) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    28769 1ksg:A (2.3) BS02 GTP ? GO:0003924 ... Q9D0J4 11980706
    28770 1ksh:A (1.8) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    28771 1ksh:A (1.8) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    28772 1ksi:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    28773 1ksi:A (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    28774 1ksi:B (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    28775 1ksi:B (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    28776 1ksj:A (2.6) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    28777 1ksj:A (2.6) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    28778 1ksj:A (2.6) BS03 GTP ? GO:0003924 ... Q9D0J4 11980706
    28779 1ksk:A (2.0) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    28780 1ksl:A (2.1) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    28781 1ksn:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12039587
    28782 1ksn:A (2.1) BS02 FXV 3.4.21.6 GO:0004252 ... P00742 12039587 MOAD: Ki=0.4nM
    28783 1ksp:A (2.3) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    28784 1ksp:A (2.3) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    28785 1ksp:A (2.3) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    28786 1kss:A (1.8) BS01 NA 1.3.2.4 GO:0009055 ... P0C278 12093271
    28787 1kss:A (1.8) BS02 HEM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28788 1kss:A (1.8) BS03 HEM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28789 1kss:A (1.8) BS04 HEM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28790 1kss:A (1.8) BS05 HEM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28791 1kss:A (1.8) BS06 FAD 1.3.2.4 GO:0009055 ... P0C278 12093271
    28792 1kss:A (1.8) BS07 FUM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28793 1ksu:A (2.0) BS01 NA 1.3.2.4 GO:0009055 ... P0C278 12093271
    28794 1ksu:A (2.0) BS02 HEM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28795 1ksu:A (2.0) BS03 HEM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28796 1ksu:A (2.0) BS04 HEM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28797 1ksu:A (2.0) BS05 HEM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28798 1ksu:A (2.0) BS06 FAD 1.3.2.4 GO:0009055 ... P0C278 12093271
    28799 1ksu:A (2.0) BS07 FUM 1.3.2.4 GO:0009055 ... P0C278 12093271
    28800 1ksu:B (2.0) BS01 NA 1.3.2.4 GO:0009055 ... P0C278 12093271

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).