SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    288001 4v6s:BI (13.1) BS02 rna ? GO:0000028 ... P02359 22467828
    288002 4v6s:BJ (13.1) BS01 rna ? GO:0000028 ... P0A7W7 22467828
    288003 4v6s:BK (13.1) BS01 rna ? GO:0000049 ... P0A7X3 22467828
    288004 4v6s:BL (13.1) BS01 rna ? GO:0000049 ... P0A7R5 22467828
    288005 4v6s:BM (13.1) BS01 rna ? GO:0002181 ... P0A7R9 22467828
    288006 4v6s:BM (13.1) BS02 rna ? GO:0002181 ... P0A7R9 22467828
    288007 4v6s:BN (13.1) BS01 rna ? GO:0000049 ... P0A7S3 22467828
    288008 4v6s:BO (13.1) BS01 rna ? GO:0000049 ... P0A7S9 22467828
    288009 4v6s:BO (13.1) BS02 rna ? GO:0000049 ... P0A7S9 22467828
    288010 4v6s:BO (13.1) BS03 rna ? GO:0000049 ... P0A7S9 22467828
    288011 4v6s:BP (13.1) BS01 rna ? GO:0000028 ... P0AG59 22467828
    288012 4v6s:BQ (13.1) BS01 rna ? GO:0003735 ... Q8X9M2 22467828
    288013 4v6s:BQ (13.1) BS02 rna ? GO:0003735 ... Q8X9M2 22467828
    288014 4v6s:BR (13.1) BS01 rna ? GO:0000028 ... P0A7T3 22467828
    288015 4v6s:BS (13.1) BS01 rna ? GO:0000028 ... P0AG63 22467828
    288016 4v6s:BT (13.1) BS01 rna ? GO:0002181 ... P0A7T7 22467828
    288017 4v6s:BT (13.1) BS02 rna ? GO:0002181 ... P0A7T7 22467828
    288018 4v6s:BU (13.1) BS01 rna ? GO:0000028 ... P0A7U3 22467828
    288019 4v6s:BV (13.1) BS01 rna ? GO:0000028 ... P0A7U7 22467828
    288020 4v6s:BW (13.1) BS01 rna ? GO:0000028 ... P68679 22467828
    288021 4v6s:BW (13.1) BS02 rna ? GO:0000028 ... P68679 22467828
    288022 4v6t:AB (8.3) BS01 rna ? GO:0000028 ... P0A7V0 22622583
    288023 4v6t:AB (8.3) BS02 rna ? GO:0000028 ... P0A7V0 22622583
    288024 4v6t:AC (8.3) BS01 rna ? GO:0003676 ... P0A7V3 22622583
    288025 4v6t:AC (8.3) BS02 rna ? GO:0003676 ... P0A7V3 22622583
    288026 4v6t:AD (8.3) BS01 rna ? GO:0000028 ... P0A7V8 22622583
    288027 4v6t:AE (8.3) BS01 rna ? GO:0000028 ... P0A7W1 22622583
    288028 4v6t:AF (8.3) BS01 rna ? GO:0003735 ... P02358 22622583
    288029 4v6t:AG (8.3) BS01 rna ? GO:0003723 ... P02359 22622583
    288030 4v6t:AH (8.3) BS01 rna ? GO:0000028 ... P0A7W7 22622583
    288031 4v6t:AI (8.3) BS01 rna ? GO:0000049 ... P0A7X3 22622583
    288032 4v6t:AI (8.3) BS02 rna ? GO:0000049 ... P0A7X3 22622583
    288033 4v6t:AJ (8.3) BS01 rna ? GO:0000049 ... P0A7R5 22622583
    288034 4v6t:AK (8.3) BS01 rna ? GO:0002181 ... P0A7R9 22622583
    288035 4v6t:AL (8.3) BS01 rna ? GO:0000049 ... P0A7S3 22622583
    288036 4v6t:AM (8.3) BS01 rna ? GO:0000049 ... P0A7S9 22622583
    288037 4v6t:AN (8.3) BS01 rna ? GO:0000028 ... P0AG59 22622583
    288038 4v6t:AO (8.3) BS01 rna ? GO:0000028 ... P0ADZ4 22622583
    288039 4v6t:AO (8.3) BS02 rna ? GO:0000028 ... P0ADZ4 22622583
    288040 4v6t:AP (8.3) BS01 rna ? GO:0000028 ... P0A7T3 22622583
    288041 4v6t:AQ (8.3) BS01 rna ? GO:0000028 ... P0AG63 22622583
    288042 4v6t:AR (8.3) BS01 rna ? GO:0003735 ... P0A7T7 22622583
    288043 4v6t:AS (8.3) BS01 rna ? GO:0003723 ... P0A7U3 22622583
    288044 4v6t:AT (8.3) BS01 rna ? GO:0000028 ... P0A7U7 22622583
    288045 4v6t:AU (8.3) BS01 rna ? GO:0003735 ... P68679 22622583
    288046 4v6t:AW (8.3) BS01 rna N/A GO:0003723 ... N/A 22622583
    288047 4v6t:AW (8.3) BS02 rna N/A GO:0003723 ... N/A 22622583
    288048 4v6t:AW (8.3) BS03 rna N/A GO:0003723 ... N/A 22622583
    288049 4v6t:AY (8.3) BS01 rna N/A GO:0003746 ... N/A 22622583
    288050 4v6t:AY (8.3) BS02 rna N/A GO:0003746 ... N/A 22622583
    288051 4v6t:B0 (8.3) BS01 rna ? GO:0000027 ... P0A7N4 22622583
    288052 4v6t:B1 (8.3) BS01 rna ? GO:0000027 ... P0A7N9 22622583
    288053 4v6t:B2 (8.3) BS01 rna ? GO:0002181 ... P0A7P5 22622583
    288054 4v6t:B3 (8.3) BS01 rna ? GO:0002181 ... P0A7Q1 22622583
    288055 4v6t:B4 (8.3) BS01 rna ? GO:0002181 ... P0A7Q6 22622583
    288056 4v6t:BC (8.3) BS01 rna ? GO:0000027 ... P60422 22622583
    288057 4v6t:BD (8.3) BS01 rna ? GO:0000027 ... P60438 22622583
    288058 4v6t:BE (8.3) BS01 rna ? GO:0001070 ... P60723 22622583
    288059 4v6t:BF (8.3) BS01 rna ? GO:0000027 ... P62399 22622583
    288060 4v6t:BF (8.3) BS02 rna ? GO:0000027 ... P62399 22622583
    288061 4v6t:BF (8.3) BS03 rna ? GO:0000027 ... P62399 22622583
    288062 4v6t:BG (8.3) BS01 rna ? GO:0000027 ... P0AG55 22622583
    288063 4v6t:BH (8.3) BS01 rna ? GO:0002181 ... P0A7R1 22622583
    288064 4v6t:BI (8.3) BS01 rna ? GO:0000027 ... P0A7J7 22622583
    288065 4v6t:BJ (8.3) BS01 rna ? GO:0002181 ... P0AA10 22622583
    288066 4v6t:BK (8.3) BS01 rna ? GO:0002181 ... P0ADY3 22622583
    288067 4v6t:BL (8.3) BS01 rna ? GO:0002181 ... P02413 22622583
    288068 4v6t:BM (8.3) BS01 rna ? GO:0000027 ... P0ADY7 22622583
    288069 4v6t:BM (8.3) BS02 rna ? GO:0000027 ... P0ADY7 22622583
    288070 4v6t:BN (8.3) BS01 rna ? GO:0000027 ... P0AG44 22622583
    288071 4v6t:BO (8.3) BS01 rna ? GO:0002181 ... P0C018 22622583
    288072 4v6t:BO (8.3) BS02 rna ? GO:0002181 ... P0C018 22622583
    288073 4v6t:BP (8.3) BS01 rna ? GO:0000027 ... P0A7K6 22622583
    288074 4v6t:BP (8.3) BS02 rna ? GO:0000027 ... P0A7K6 22622583
    288075 4v6t:BQ (8.3) BS01 rna ? GO:0000027 ... P0A7L3 22622583
    288076 4v6t:BR (8.3) BS01 rna ? GO:0002181 ... P0AG48 22622583
    288077 4v6t:BS (8.3) BS01 rna ? GO:0002181 ... P61175 22622583
    288078 4v6t:BT (8.3) BS01 rna ? GO:0000027 ... P0ADZ0 22622583
    288079 4v6t:BU (8.3) BS01 rna ? GO:0000027 ... P60624 22622583
    288080 4v6t:BV (8.3) BS01 rna ? GO:0000027 ... P68919 22622583
    288081 4v6t:BW (8.3) BS01 rna ? GO:0003735 ... P0A7L8 22622583
    288082 4v6t:BW (8.3) BS02 rna ? GO:0003735 ... P0A7L8 22622583
    288083 4v6t:BX (8.3) BS01 rna ? GO:0000027 ... P0A7M2 22622583
    288084 4v6t:BY (8.3) BS01 rna ? GO:0000027 ... P0A7M6 22622583
    288085 4v6t:BZ (8.3) BS01 rna ? GO:0000027 ... P0AG51 22622583
    288086 4v6u:A3 (6.6) BS01 rna ? GO:0001682 ... Q8U160 23222135
    288087 4v6u:AA (6.6) BS01 rna ? GO:0003735 ... Q8TZE1 23222135
    288088 4v6u:AA (6.6) BS02 rna ? GO:0003735 ... Q8TZE1 23222135
    288089 4v6u:AB (6.6) BS01 rna ? GO:0003735 ... Q8U0F0 23222135
    288090 4v6u:AC (6.6) BS01 rna ? GO:0003676 ... Q8U004 23222135
    288091 4v6u:AD (6.6) BS01 rna ? GO:0003723 ... P61993 23222135
    288092 4v6u:AE (6.6) BS01 rna ? GO:0003723 ... Q8U011 23222135
    288093 4v6u:AF (6.6) BS01 rna ? GO:0003723 ... Q8U017 23222135
    288094 4v6u:AG (6.6) BS01 rna ? GO:0003735 ... Q8U3H8 23222135
    288095 4v6u:AH (6.6) BS01 rna ? GO:0003735 ... Q8U0M8 23222135
    288096 4v6u:AH (6.6) BS02 rna ? GO:0003735 ... Q8U0M8 23222135
    288097 4v6u:AI (6.6) BS01 rna ? GO:0003735 ... Q8U014 23222135
    288098 4v6u:AJ (6.6) BS01 rna ? GO:0003735 ... Q8U1Y5 23222135
    288099 4v6u:AJ (6.6) BS02 rna ? GO:0003735 ... Q8U1Y5 23222135
    288100 4v6u:AK (6.6) BS01 rna ? GO:0000462 ... Q8U0E7 23222135
    288101 4v6u:AL (6.6) BS01 rna ? GO:0000049 ... P61885 23222135
    288102 4v6u:AM (6.6) BS01 rna ? GO:0003735 ... Q8U0E3 23222135
    288103 4v6u:AM (6.6) BS02 rna ? GO:0003735 ... Q8U0E3 23222135
    288104 4v6u:AN (6.6) BS01 rna ? GO:0003735 ... P61995 23222135
    288105 4v6u:AO (6.6) BS01 rna ? GO:0003676 ... Q8U0E2 23222135
    288106 4v6u:AO (6.6) BS02 rna ? GO:0003676 ... Q8U0E2 23222135
    288107 4v6u:AP (6.6) BS01 rna ? GO:0002181 ... Q8U013 23222135
    288108 4v6u:AQ (6.6) BS01 rna ? GO:0003735 ... Q8TZD9 23222135
    288109 4v6u:AQ (6.6) BS02 rna ? GO:0003735 ... Q8TZD9 23222135
    288110 4v6u:AR (6.6) BS01 rna ? GO:0003735 ... Q8U008 23222135
    288111 4v6u:AS (6.6) BS01 rna ? GO:0003735 ... Q8U0U1 23222135
    288112 4v6u:AT (6.6) BS01 rna ? GO:0000028 ... Q8U002 23222135
    288113 4v6u:AU (6.6) BS01 rna ? GO:0000028 ... Q8U0T4 23222135
    288114 4v6u:AV (6.6) BS01 rna ? GO:0003735 ... Q8U442 23222135
    288115 4v6u:AW (6.6) BS01 rna ? GO:0003735 ... Q8U474 23222135
    288116 4v6u:AX (6.6) BS01 rna ? GO:0000028 ... Q8U159 23222135
    288117 4v6u:AY (6.6) BS01 rna ? GO:0003735 ... Q8U443 23222135
    288118 4v6u:B4 (6.6) BS01 rna ? GO:0001682 ... Q8U160 23222135
    288119 4v6u:B5 (6.6) BS01 rna ? GO:0003723 ... Q8U2L5 23222135
    288120 4v6u:B6 (6.6) BS01 rna ? GO:0003735 ... Q8U442 23222135
    288121 4v6u:BA (6.6) BS01 rna ? GO:0000049 ... Q8TZJ9 23222135
    288122 4v6u:BA (6.6) BS02 rna ? GO:0000049 ... Q8TZJ9 23222135
    288123 4v6u:BB (6.6) BS01 rna ? GO:0002181 ... Q8U001 23222135
    288124 4v6u:BC (6.6) BS01 rna ? GO:0003723 ... Q8TZZ8 23222135
    288125 4v6u:BD (6.6) BS01 rna ? GO:0003735 ... Q8TZZ9 23222135
    288126 4v6u:BE (6.6) BS01 rna ? GO:0000049 ... Q8U012 23222135
    288127 4v6u:BE (6.6) BS02 rna ? GO:0000049 ... Q8U012 23222135
    288128 4v6u:BF (6.6) BS01 rna ? GO:0002181 ... Q8U015 23222135
    288129 4v6u:BG (6.6) BS01 rna ? GO:0001682 ... Q8U160 23222135
    288130 4v6u:BH (6.6) BS01 rna ? GO:0003735 ... Q8TZK0 23222135
    288131 4v6u:BI (6.6) BS01 rna ? GO:0003729 ... Q8U0E6 23222135
    288132 4v6u:BJ (6.6) BS01 rna ? GO:0003735 ... Q8U009 23222135
    288133 4v6u:BJ (6.6) BS02 rna ? GO:0003735 ... Q8U009 23222135
    288134 4v6u:BK (6.6) BS01 rna ? GO:0003723 ... Q8U2L5 23222135
    288135 4v6u:BL (6.6) BS01 rna ? GO:0003735 ... Q8U018 23222135
    288136 4v6u:BM (6.6) BS01 rna ? GO:0002181 ... Q8U2F9 23222135
    288137 4v6u:BN (6.6) BS01 rna ? GO:0003735 ... Q9UWP5 23222135
    288138 4v6u:BN (6.6) BS02 rna ? GO:0003735 ... Q9UWP5 23222135
    288139 4v6u:BN (6.6) BS03 rna ? GO:0003735 ... Q9UWP5 23222135
    288140 4v6u:BO (6.6) BS01 rna ? GO:0000027 ... Q9HH80 23222135
    288141 4v6u:BO (6.6) BS02 rna ? GO:0000027 ... Q9HH80 23222135
    288142 4v6u:BP (6.6) BS01 rna ? GO:0003723 ... Q8U0E5 23222135
    288143 4v6u:BQ (6.6) BS01 rna ? GO:0003723 ... Q8U016 23222135
    288144 4v6u:BR (6.6) BS01 rna ? GO:0003735 ... Q8U217 23222135
    288145 4v6u:BR (6.6) BS02 rna ? GO:0003735 ... Q8U217 23222135
    288146 4v6u:BS (6.6) BS01 rna ? GO:0002181 ... Q8U003 23222135
    288147 4v6u:BT (6.6) BS01 rna ? GO:0003735 ... Q8U000 23222135
    288148 4v6u:BU (6.6) BS01 rna ? GO:0003723 ... Q8U010 23222135
    288149 4v6u:BV (6.6) BS01 rna ? GO:0003735 ... Q8U158 23222135
    288150 4v6u:BW (6.6) BS01 rna ? GO:0003735 ... Q8U005 23222135
    288151 4v6u:BY (6.6) BS01 rna ? GO:0000463 ... Q9HH78 23222135
    288152 4v6u:BY (6.6) BS02 rna ? GO:0000463 ... Q9HH78 23222135
    288153 4v6u:BZ (6.6) BS01 rna ? GO:0003723 ... Q8U0M6 23222135
    288154 4v6u:Ba (6.6) BS01 rna ? GO:0002181 ... Q8U3S7 23222135
    288155 4v6u:Bb (6.6) BS01 rna ? GO:0003735 ... Q9HH82 23222135
    288156 4v6u:Bc (6.6) BS01 rna ? GO:0003735 ... Q8TZV6 23222135
    288157 4v6u:Bd (6.6) BS01 rna ? GO:0003735 ... Q8U2L3 23222135
    288158 4v6u:Be (6.6) BS01 rna ? GO:0003723 ... Q8U0P5 23222135
    288159 4v6u:Bf (6.6) BS01 rna ? GO:0003735 ... Q8U3S6 23222135
    288160 4v6u:Bg (6.6) BS01 rna ? GO:0003735 ... Q8U0V6 23222135
    288161 4v6u:Bi (6.6) BS01 rna ? GO:0003735 ... Q8TZI4 23222135
    288162 4v6u:Bj (6.6) BS01 rna ? GO:0003735 ... Q8U475 23222135
    288163 4v6u:Bj (6.6) BS02 rna ? GO:0003735 ... Q8U475 23222135
    288164 4v6u:Bk (6.6) BS01 rna ? GO:0000027 ... Q8TZJ8 23222135
    288165 4v6u:Bl (6.6) BS01 rna ? GO:0003735 ... Q8U3S9 23222135
    288166 4v6v:A1 (9.8) BS01 rna ? GO:0003924 ... P10952 23403578
    288167 4v6v:A1 (9.8) BS02 rna ? GO:0003924 ... P10952 23403578
    288168 4v6v:A1 (9.8) BS03 rna ? GO:0003924 ... P10952 23403578
    288169 4v6v:AB (9.8) BS01 rna ? GO:0000028 ... P0A7V0 23403578
    288170 4v6v:AC (9.8) BS01 rna ? GO:0000028 ... P0A7V3 23403578
    288171 4v6v:AC (9.8) BS02 rna ? GO:0000028 ... P0A7V3 23403578
    288172 4v6v:AD (9.8) BS01 rna ? GO:0000028 ... P0A7V8 23403578
    288173 4v6v:AD (9.8) BS02 rna ? GO:0000028 ... P0A7V8 23403578
    288174 4v6v:AE (9.8) BS01 rna ? GO:0000028 ... P0A7W1 23403578
    288175 4v6v:AE (9.8) BS02 rna ? GO:0000028 ... P0A7W1 23403578
    288176 4v6v:AF (9.8) BS01 rna ? GO:0002181 ... P02358 23403578
    288177 4v6v:AG (9.8) BS01 rna ? GO:0000028 ... P02359 23403578
    288178 4v6v:AG (9.8) BS02 rna ? GO:0000028 ... P02359 23403578
    288179 4v6v:AH (9.8) BS01 rna ? GO:0000028 ... P0A7W7 23403578
    288180 4v6v:AI (9.8) BS01 rna ? GO:0000049 ... P0A7X3 23403578
    288181 4v6v:AJ (9.8) BS01 rna ? GO:0000049 ... P0A7R5 23403578
    288182 4v6v:AK (9.8) BS01 rna ? GO:0002181 ... P0A7R9 23403578
    288183 4v6v:AK (9.8) BS02 rna ? GO:0002181 ... P0A7R9 23403578
    288184 4v6v:AK (9.8) BS03 rna ? GO:0002181 ... P0A7R9 23403578
    288185 4v6v:AL (9.8) BS01 rna ? GO:0000049 ... P0A7S3 23403578
    288186 4v6v:AL (9.8) BS02 rna ? GO:0000049 ... P0A7S3 23403578
    288187 4v6v:AM (9.8) BS01 rna ? GO:0000049 ... P0A7S9 23403578
    288188 4v6v:AM (9.8) BS02 rna ? GO:0000049 ... P0A7S9 23403578
    288189 4v6v:AN (9.8) BS01 rna ? GO:0000028 ... P0AG59 23403578
    288190 4v6v:AO (9.8) BS01 rna ? GO:0000028 ... P0ADZ4 23403578
    288191 4v6v:AO (9.8) BS02 rna ? GO:0000028 ... P0ADZ4 23403578
    288192 4v6v:AP (9.8) BS01 rna ? GO:0000028 ... P0A7T3 23403578
    288193 4v6v:AQ (9.8) BS01 rna ? GO:0000028 ... P0AG63 23403578
    288194 4v6v:AR (9.8) BS01 rna ? GO:0002181 ... P0A7T7 23403578
    288195 4v6v:AS (9.8) BS01 rna ? GO:0000028 ... P0A7U3 23403578
    288196 4v6v:AS (9.8) BS02 rna ? GO:0000028 ... P0A7U3 23403578
    288197 4v6v:AT (9.8) BS01 rna ? GO:0000028 ... P0A7U7 23403578
    288198 4v6v:AU (9.8) BS01 rna ? GO:0000028 ... P68679 23403578
    288199 4v6v:AU (9.8) BS02 rna ? GO:0000028 ... P68679 23403578
    288200 4v6v:B0 (9.8) BS01 rna ? GO:0000027 ... P0A7L8 23403578

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).