SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    288401 4v6x:CJ (5.0) BS01 rna ? GO:0000027 ... P62913 23636399
    288402 4v6x:CJ (5.0) BS02 rna ? GO:0000027 ... P62913 23636399
    288403 4v6x:CK (5.0) BS01 rna ? GO:0002181 ... P30050 23636399
    288404 4v6x:CL (5.0) BS01 rna ? GO:0001824 ... P26373 23636399
    288405 4v6x:CL (5.0) BS02 rna ? GO:0001824 ... P26373 23636399
    288406 4v6x:CM (5.0) BS01 rna ? GO:0002181 ... P50914 23636399
    288407 4v6x:CN (5.0) BS01 rna ? GO:0002181 ... P61313 23636399
    288408 4v6x:CN (5.0) BS02 rna ? GO:0002181 ... P61313 23636399
    288409 4v6x:CO (5.0) BS01 rna ? GO:0002181 ... P40429 23636399
    288410 4v6x:CP (5.0) BS01 rna ? GO:0002181 ... P18621 23636399
    288411 4v6x:CP (5.0) BS02 rna ? GO:0002181 ... P18621 23636399
    288412 4v6x:CQ (5.0) BS01 rna ? GO:0002181 ... Q07020 23636399
    288413 4v6x:CR (5.0) BS01 rna ? GO:0002181 ... P84098 23636399
    288414 4v6x:CR (5.0) BS02 rna ? GO:0002181 ... P84098 23636399
    288415 4v6x:CS (5.0) BS01 rna ? GO:0002181 ... Q02543 23636399
    288416 4v6x:CS (5.0) BS02 rna ? GO:0002181 ... Q02543 23636399
    288417 4v6x:CT (5.0) BS01 rna ? GO:0002181 ... P46778 23636399
    288418 4v6x:CT (5.0) BS02 rna ? GO:0002181 ... P46778 23636399
    288419 4v6x:CU (5.0) BS01 rna ? GO:0002181 ... P35268 23636399
    288420 4v6x:CV (5.0) BS01 rna ? GO:0000122 ... P62829 23636399
    288421 4v6x:CV (5.0) BS02 rna ? GO:0000122 ... P62829 23636399
    288422 4v6x:CW (5.0) BS01 rna ? GO:0000027 ... P83731 23636399
    288423 4v6x:CW (5.0) BS02 rna ? GO:0000027 ... P83731 23636399
    288424 4v6x:CX (5.0) BS01 rna ? GO:0002181 ... P62750 23636399
    288425 4v6x:CX (5.0) BS02 rna ? GO:0002181 ... P62750 23636399
    288426 4v6x:CY (5.0) BS01 rna ? GO:0002181 ... P61254 23636399
    288427 4v6x:CY (5.0) BS02 rna ? GO:0002181 ... P61254 23636399
    288428 4v6x:CZ (5.0) BS01 rna ? GO:0002181 ... P61353 23636399
    288429 4v6x:Ca (5.0) BS01 rna ? GO:0002181 ... P46776 23636399
    288430 4v6x:Cb (5.0) BS01 rna ? GO:0002181 ... P47914 23636399
    288431 4v6x:Cc (5.0) BS01 rna ? GO:0002181 ... P62888 23636399
    288432 4v6x:Cd (5.0) BS01 rna ? GO:0002181 ... P62899 23636399
    288433 4v6x:Ce (5.0) BS01 rna ? GO:0002181 ... P62910 23636399
    288434 4v6x:Cf (5.0) BS01 rna ? GO:0000049 ... P18077 23636399
    288435 4v6x:Cg (5.0) BS01 rna ? GO:0002181 ... P49207 23636399
    288436 4v6x:Ch (5.0) BS01 rna ? GO:0000463 ... P42766 23636399
    288437 4v6x:Ch (5.0) BS02 rna ? GO:0000463 ... P42766 23636399
    288438 4v6x:Ci (5.0) BS01 rna ? GO:0002181 ... Q9Y3U8 23636399
    288439 4v6x:Cj (5.0) BS01 rna ? GO:0002181 ... P61927 23636399
    288440 4v6x:Cj (5.0) BS02 rna ? GO:0002181 ... P61927 23636399
    288441 4v6x:Ck (5.0) BS01 rna ? GO:0001501 ... P63173 23636399
    288442 4v6x:Cl (5.0) BS01 rna ? GO:0002181 ... P62891 23636399
    288443 4v6x:Cl (5.0) BS02 rna ? GO:0002181 ... P62891 23636399
    288444 4v6x:Cm (5.0) BS01 rna ? GO:0003735 ... P62987 23636399
    288445 4v6x:Co (5.0) BS01 rna ? GO:0002181 ... P83881 23636399
    288446 4v6x:Co (5.0) BS02 rna ? GO:0002181 ... P83881 23636399
    288447 4v6x:Cp (5.0) BS01 rna ? GO:0002181 ... P61513 23636399
    288448 4v6x:Cq (5.0) BS01 rna ? GO:0002181 ... P05388 23636399
    288449 4v6x:Cr (5.0) BS01 rna ? GO:0002181 ... P46779 23636399
    288450 4v6x:Cz (5.0) BS01 rna ? GO:0002181 ... P62906 23636399
    288451 4v6x:Cz (5.0) BS02 rna ? GO:0002181 ... P62906 23636399
    288452 4v6y:AB (12.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    288453 4v6y:AC (12.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    288454 4v6y:AD (12.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    288455 4v6y:AD (12.0) BS02 rna ? GO:0000028 ... P0A7V8 24186064
    288456 4v6y:AE (12.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    288457 4v6y:AE (12.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    288458 4v6y:AF (12.0) BS01 rna ? GO:0003735 ... P02358 24186064
    288459 4v6y:AG (12.0) BS01 rna ? GO:0003723 ... P02359 24186064
    288460 4v6y:AG (12.0) BS02 rna ? GO:0003723 ... P02359 24186064
    288461 4v6y:AH (12.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    288462 4v6y:AI (12.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    288463 4v6y:AJ (12.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    288464 4v6y:AK (12.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    288465 4v6y:AK (12.0) BS02 rna ? GO:0002181 ... P0A7R9 24186064
    288466 4v6y:AL (12.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    288467 4v6y:AM (12.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    288468 4v6y:AN (12.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    288469 4v6y:AO (12.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    288470 4v6y:AO (12.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    288471 4v6y:AP (12.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    288472 4v6y:AQ (12.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    288473 4v6y:AR (12.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    288474 4v6y:AS (12.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    288475 4v6y:AT (12.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    288476 4v6y:AU (12.0) BS01 rna ? GO:0003735 ... P68679 24186064
    288477 4v6y:B0 (12.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    288478 4v6y:B1 (12.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    288479 4v6y:B2 (12.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    288480 4v6y:B3 (12.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    288481 4v6y:B4 (12.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    288482 4v6y:B5 (12.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    288483 4v6y:BC (12.0) BS01 rna ? GO:0000027 ... P60422 24186064
    288484 4v6y:BC (12.0) BS02 rna ? GO:0000027 ... P60422 24186064
    288485 4v6y:BD (12.0) BS01 rna ? GO:0000027 ... P60438 24186064
    288486 4v6y:BE (12.0) BS01 rna ? GO:0001070 ... P60723 24186064
    288487 4v6y:BF (12.0) BS01 rna ? GO:0000027 ... P62399 24186064
    288488 4v6y:BF (12.0) BS02 rna ? GO:0000027 ... P62399 24186064
    288489 4v6y:BF (12.0) BS03 rna ? GO:0000027 ... P62399 24186064
    288490 4v6y:BG (12.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    288491 4v6y:BH (12.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    288492 4v6y:BI (12.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    288493 4v6y:BJ (12.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    288494 4v6y:BK (12.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    288495 4v6y:BK (12.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    288496 4v6y:BL (12.0) BS01 rna ? GO:0002181 ... P02413 24186064
    288497 4v6y:BM (12.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    288498 4v6y:BM (12.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    288499 4v6y:BM (12.0) BS03 rna ? GO:0000027 ... P0ADY7 24186064
    288500 4v6y:BN (12.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    288501 4v6y:BO (12.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    288502 4v6y:BO (12.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    288503 4v6y:BP (12.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    288504 4v6y:BP (12.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    288505 4v6y:BQ (12.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    288506 4v6y:BR (12.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    288507 4v6y:BS (12.0) BS01 rna ? GO:0002181 ... P61175 24186064
    288508 4v6y:BT (12.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    288509 4v6y:BU (12.0) BS01 rna ? GO:0000027 ... P60624 24186064
    288510 4v6y:BV (12.0) BS01 rna ? GO:0000027 ... P68919 24186064
    288511 4v6y:BV (12.0) BS02 rna ? GO:0000027 ... P68919 24186064
    288512 4v6y:BW (12.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    288513 4v6y:BW (12.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    288514 4v6y:BX (12.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    288515 4v6y:BY (12.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    288516 4v6y:BZ (12.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    288517 4v6y:BZ (12.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    288518 4v6z:AB (12.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    288519 4v6z:AC (12.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    288520 4v6z:AC (12.0) BS02 rna ? GO:0003676 ... P0A7V3 24186064
    288521 4v6z:AD (12.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    288522 4v6z:AE (12.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    288523 4v6z:AE (12.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    288524 4v6z:AF (12.0) BS01 rna ? GO:0003735 ... P02358 24186064
    288525 4v6z:AG (12.0) BS01 rna ? GO:0003723 ... P02359 24186064
    288526 4v6z:AH (12.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    288527 4v6z:AI (12.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    288528 4v6z:AJ (12.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    288529 4v6z:AK (12.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    288530 4v6z:AL (12.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    288531 4v6z:AM (12.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    288532 4v6z:AN (12.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    288533 4v6z:AO (12.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    288534 4v6z:AO (12.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    288535 4v6z:AP (12.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    288536 4v6z:AQ (12.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    288537 4v6z:AR (12.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    288538 4v6z:AS (12.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    288539 4v6z:AT (12.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    288540 4v6z:AU (12.0) BS01 rna ? GO:0003735 ... P68679 24186064
    288541 4v6z:B0 (12.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    288542 4v6z:B1 (12.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    288543 4v6z:B2 (12.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    288544 4v6z:B3 (12.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    288545 4v6z:B4 (12.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    288546 4v6z:B5 (12.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    288547 4v6z:BC (12.0) BS01 rna ? GO:0000027 ... P60422 24186064
    288548 4v6z:BC (12.0) BS02 rna ? GO:0000027 ... P60422 24186064
    288549 4v6z:BD (12.0) BS01 rna ? GO:0000027 ... P60438 24186064
    288550 4v6z:BE (12.0) BS01 rna ? GO:0001070 ... P60723 24186064
    288551 4v6z:BF (12.0) BS01 rna ? GO:0000027 ... P62399 24186064
    288552 4v6z:BF (12.0) BS02 rna ? GO:0000027 ... P62399 24186064
    288553 4v6z:BG (12.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    288554 4v6z:BH (12.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    288555 4v6z:BI (12.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    288556 4v6z:BJ (12.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    288557 4v6z:BK (12.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    288558 4v6z:BK (12.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    288559 4v6z:BL (12.0) BS01 rna ? GO:0002181 ... P02413 24186064
    288560 4v6z:BM (12.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    288561 4v6z:BM (12.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    288562 4v6z:BN (12.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    288563 4v6z:BO (12.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    288564 4v6z:BO (12.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    288565 4v6z:BP (12.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    288566 4v6z:BP (12.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    288567 4v6z:BQ (12.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    288568 4v6z:BR (12.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    288569 4v6z:BS (12.0) BS01 rna ? GO:0002181 ... P61175 24186064
    288570 4v6z:BT (12.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    288571 4v6z:BU (12.0) BS01 rna ? GO:0000027 ... P60624 24186064
    288572 4v6z:BV (12.0) BS01 rna ? GO:0000027 ... P68919 24186064
    288573 4v6z:BW (12.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    288574 4v6z:BW (12.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    288575 4v6z:BX (12.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    288576 4v6z:BY (12.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    288577 4v6z:BZ (12.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    288578 4v6z:BZ (12.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    288579 4v70:AB (17.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    288580 4v70:AC (17.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    288581 4v70:AC (17.0) BS02 rna ? GO:0003676 ... P0A7V3 24186064
    288582 4v70:AD (17.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    288583 4v70:AD (17.0) BS02 rna ? GO:0000028 ... P0A7V8 24186064
    288584 4v70:AE (17.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    288585 4v70:AE (17.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    288586 4v70:AF (17.0) BS01 rna ? GO:0003735 ... P02358 24186064
    288587 4v70:AG (17.0) BS01 rna ? GO:0003723 ... P02359 24186064
    288588 4v70:AG (17.0) BS02 rna ? GO:0003723 ... P02359 24186064
    288589 4v70:AH (17.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    288590 4v70:AI (17.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    288591 4v70:AJ (17.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    288592 4v70:AK (17.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    288593 4v70:AL (17.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    288594 4v70:AM (17.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    288595 4v70:AN (17.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    288596 4v70:AO (17.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    288597 4v70:AO (17.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    288598 4v70:AP (17.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    288599 4v70:AQ (17.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    288600 4v70:AR (17.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).