SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    288601 4v70:AS (17.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    288602 4v70:AT (17.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    288603 4v70:AU (17.0) BS01 rna ? GO:0003735 ... P68679 24186064
    288604 4v70:B0 (17.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    288605 4v70:B1 (17.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    288606 4v70:B1 (17.0) BS02 rna ? GO:0000027 ... P0A7N9 24186064
    288607 4v70:B2 (17.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    288608 4v70:B3 (17.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    288609 4v70:B4 (17.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    288610 4v70:B5 (17.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    288611 4v70:B5 (17.0) BS02 rna ? GO:0000027 ... P0A7L0 24186064
    288612 4v70:BC (17.0) BS01 rna ? GO:0000027 ... P60422 24186064
    288613 4v70:BC (17.0) BS02 rna ? GO:0000027 ... P60422 24186064
    288614 4v70:BD (17.0) BS01 rna ? GO:0000027 ... P60438 24186064
    288615 4v70:BE (17.0) BS01 rna ? GO:0001070 ... P60723 24186064
    288616 4v70:BF (17.0) BS01 rna ? GO:0000027 ... P62399 24186064
    288617 4v70:BF (17.0) BS02 rna ? GO:0000027 ... P62399 24186064
    288618 4v70:BG (17.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    288619 4v70:BH (17.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    288620 4v70:BI (17.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    288621 4v70:BJ (17.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    288622 4v70:BK (17.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    288623 4v70:BK (17.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    288624 4v70:BL (17.0) BS01 rna ? GO:0002181 ... P02413 24186064
    288625 4v70:BM (17.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    288626 4v70:BM (17.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    288627 4v70:BN (17.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    288628 4v70:BO (17.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    288629 4v70:BO (17.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    288630 4v70:BP (17.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    288631 4v70:BP (17.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    288632 4v70:BQ (17.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    288633 4v70:BR (17.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    288634 4v70:BS (17.0) BS01 rna ? GO:0002181 ... P61175 24186064
    288635 4v70:BT (17.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    288636 4v70:BU (17.0) BS01 rna ? GO:0000027 ... P60624 24186064
    288637 4v70:BV (17.0) BS01 rna ? GO:0000027 ... P68919 24186064
    288638 4v70:BW (17.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    288639 4v70:BW (17.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    288640 4v70:BX (17.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    288641 4v70:BY (17.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    288642 4v70:BZ (17.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    288643 4v70:BZ (17.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    288644 4v71:AB (20.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    288645 4v71:AC (20.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    288646 4v71:AC (20.0) BS02 rna ? GO:0003676 ... P0A7V3 24186064
    288647 4v71:AD (20.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    288648 4v71:AE (20.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    288649 4v71:AE (20.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    288650 4v71:AF (20.0) BS01 rna ? GO:0003735 ... P02358 24186064
    288651 4v71:AG (20.0) BS01 rna ? GO:0003723 ... P02359 24186064
    288652 4v71:AH (20.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    288653 4v71:AI (20.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    288654 4v71:AJ (20.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    288655 4v71:AK (20.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    288656 4v71:AK (20.0) BS02 rna ? GO:0002181 ... P0A7R9 24186064
    288657 4v71:AL (20.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    288658 4v71:AM (20.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    288659 4v71:AN (20.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    288660 4v71:AO (20.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    288661 4v71:AO (20.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    288662 4v71:AP (20.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    288663 4v71:AQ (20.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    288664 4v71:AR (20.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    288665 4v71:AS (20.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    288666 4v71:AT (20.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    288667 4v71:AU (20.0) BS01 rna ? GO:0003735 ... P68679 24186064
    288668 4v71:B0 (20.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    288669 4v71:B1 (20.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    288670 4v71:B2 (20.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    288671 4v71:B3 (20.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    288672 4v71:B4 (20.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    288673 4v71:B5 (20.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    288674 4v71:BC (20.0) BS01 rna ? GO:0000027 ... P60422 24186064
    288675 4v71:BC (20.0) BS02 rna ? GO:0000027 ... P60422 24186064
    288676 4v71:BD (20.0) BS01 rna ? GO:0000027 ... P60438 24186064
    288677 4v71:BE (20.0) BS01 rna ? GO:0001070 ... P60723 24186064
    288678 4v71:BF (20.0) BS01 rna ? GO:0000027 ... P62399 24186064
    288679 4v71:BF (20.0) BS02 rna ? GO:0000027 ... P62399 24186064
    288680 4v71:BF (20.0) BS03 rna ? GO:0000027 ... P62399 24186064
    288681 4v71:BG (20.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    288682 4v71:BH (20.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    288683 4v71:BI (20.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    288684 4v71:BJ (20.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    288685 4v71:BK (20.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    288686 4v71:BK (20.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    288687 4v71:BL (20.0) BS01 rna ? GO:0002181 ... P02413 24186064
    288688 4v71:BM (20.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    288689 4v71:BM (20.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    288690 4v71:BM (20.0) BS03 rna ? GO:0000027 ... P0ADY7 24186064
    288691 4v71:BM (20.0) BS04 rna ? GO:0000027 ... P0ADY7 24186064
    288692 4v71:BN (20.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    288693 4v71:BO (20.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    288694 4v71:BO (20.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    288695 4v71:BP (20.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    288696 4v71:BP (20.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    288697 4v71:BQ (20.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    288698 4v71:BR (20.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    288699 4v71:BS (20.0) BS01 rna ? GO:0002181 ... P61175 24186064
    288700 4v71:BT (20.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    288701 4v71:BU (20.0) BS01 rna ? GO:0000027 ... P60624 24186064
    288702 4v71:BV (20.0) BS01 rna ? GO:0000027 ... P68919 24186064
    288703 4v71:BW (20.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    288704 4v71:BX (20.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    288705 4v71:BY (20.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    288706 4v71:BZ (20.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    288707 4v71:BZ (20.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    288708 4v72:AB (13.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    288709 4v72:AC (13.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    288710 4v72:AC (13.0) BS02 rna ? GO:0003676 ... P0A7V3 24186064
    288711 4v72:AD (13.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    288712 4v72:AE (13.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    288713 4v72:AE (13.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    288714 4v72:AF (13.0) BS01 rna ? GO:0003735 ... P02358 24186064
    288715 4v72:AG (13.0) BS01 rna ? GO:0003723 ... P02359 24186064
    288716 4v72:AG (13.0) BS02 rna ? GO:0003723 ... P02359 24186064
    288717 4v72:AH (13.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    288718 4v72:AI (13.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    288719 4v72:AI (13.0) BS02 rna ? GO:0000049 ... P0A7X3 24186064
    288720 4v72:AJ (13.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    288721 4v72:AK (13.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    288722 4v72:AL (13.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    288723 4v72:AM (13.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    288724 4v72:AN (13.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    288725 4v72:AO (13.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    288726 4v72:AO (13.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    288727 4v72:AP (13.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    288728 4v72:AQ (13.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    288729 4v72:AR (13.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    288730 4v72:AS (13.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    288731 4v72:AT (13.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    288732 4v72:AU (13.0) BS01 rna ? GO:0003735 ... P68679 24186064
    288733 4v72:B0 (13.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    288734 4v72:B1 (13.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    288735 4v72:B1 (13.0) BS02 rna ? GO:0000027 ... P0A7N9 24186064
    288736 4v72:B2 (13.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    288737 4v72:B3 (13.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    288738 4v72:B4 (13.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    288739 4v72:B5 (13.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    288740 4v72:B5 (13.0) BS02 rna ? GO:0000027 ... P0A7L0 24186064
    288741 4v72:BC (13.0) BS01 rna ? GO:0000027 ... P60422 24186064
    288742 4v72:BC (13.0) BS02 rna ? GO:0000027 ... P60422 24186064
    288743 4v72:BD (13.0) BS01 rna ? GO:0000027 ... P60438 24186064
    288744 4v72:BE (13.0) BS01 rna ? GO:0001070 ... P60723 24186064
    288745 4v72:BF (13.0) BS01 rna ? GO:0000027 ... P62399 24186064
    288746 4v72:BF (13.0) BS02 rna ? GO:0000027 ... P62399 24186064
    288747 4v72:BG (13.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    288748 4v72:BI (13.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    288749 4v72:BJ (13.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    288750 4v72:BK (13.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    288751 4v72:BK (13.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    288752 4v72:BL (13.0) BS01 rna ? GO:0002181 ... P02413 24186064
    288753 4v72:BM (13.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    288754 4v72:BM (13.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    288755 4v72:BM (13.0) BS03 rna ? GO:0000027 ... P0ADY7 24186064
    288756 4v72:BN (13.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    288757 4v72:BO (13.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    288758 4v72:BO (13.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    288759 4v72:BP (13.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    288760 4v72:BP (13.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    288761 4v72:BQ (13.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    288762 4v72:BR (13.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    288763 4v72:BS (13.0) BS01 rna ? GO:0002181 ... P61175 24186064
    288764 4v72:BT (13.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    288765 4v72:BU (13.0) BS01 rna ? GO:0000027 ... P60624 24186064
    288766 4v72:BV (13.0) BS01 rna ? GO:0000027 ... P68919 24186064
    288767 4v72:BW (13.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    288768 4v72:BW (13.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    288769 4v72:BX (13.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    288770 4v72:BY (13.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    288771 4v72:BZ (13.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    288772 4v72:BZ (13.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    288773 4v73:AB (15.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    288774 4v73:AC (15.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    288775 4v73:AC (15.0) BS02 rna ? GO:0003676 ... P0A7V3 24186064
    288776 4v73:AD (15.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    288777 4v73:AD (15.0) BS02 rna ? GO:0000028 ... P0A7V8 24186064
    288778 4v73:AE (15.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    288779 4v73:AE (15.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    288780 4v73:AF (15.0) BS01 rna ? GO:0003735 ... P02358 24186064
    288781 4v73:AG (15.0) BS01 rna ? GO:0003723 ... P02359 24186064
    288782 4v73:AG (15.0) BS02 rna ? GO:0003723 ... P02359 24186064
    288783 4v73:AH (15.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    288784 4v73:AI (15.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    288785 4v73:AJ (15.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    288786 4v73:AK (15.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    288787 4v73:AL (15.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    288788 4v73:AM (15.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    288789 4v73:AN (15.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    288790 4v73:AO (15.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    288791 4v73:AO (15.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    288792 4v73:AP (15.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    288793 4v73:AQ (15.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    288794 4v73:AR (15.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    288795 4v73:AS (15.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    288796 4v73:AS (15.0) BS02 rna ? GO:0003723 ... P0A7U3 24186064
    288797 4v73:AT (15.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    288798 4v73:AU (15.0) BS01 rna ? GO:0003735 ... P68679 24186064
    288799 4v73:B0 (15.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    288800 4v73:B1 (15.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).