SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    289001 4v76:BF (17.0) BS01 rna ? GO:0000027 ... P62399 24186064
    289002 4v76:BF (17.0) BS02 rna ? GO:0000027 ... P62399 24186064
    289003 4v76:BF (17.0) BS03 rna ? GO:0000027 ... P62399 24186064
    289004 4v76:BG (17.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    289005 4v76:BH (17.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    289006 4v76:BI (17.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    289007 4v76:BJ (17.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    289008 4v76:BK (17.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    289009 4v76:BK (17.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    289010 4v76:BL (17.0) BS01 rna ? GO:0002181 ... P02413 24186064
    289011 4v76:BM (17.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    289012 4v76:BM (17.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    289013 4v76:BN (17.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    289014 4v76:BO (17.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    289015 4v76:BO (17.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    289016 4v76:BP (17.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    289017 4v76:BP (17.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    289018 4v76:BQ (17.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    289019 4v76:BR (17.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    289020 4v76:BS (17.0) BS01 rna ? GO:0002181 ... P61175 24186064
    289021 4v76:BT (17.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    289022 4v76:BU (17.0) BS01 rna ? GO:0000027 ... P60624 24186064
    289023 4v76:BV (17.0) BS01 rna ? GO:0000027 ... P68919 24186064
    289024 4v76:BW (17.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    289025 4v76:BW (17.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    289026 4v76:BX (17.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    289027 4v76:BY (17.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    289028 4v76:BZ (17.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    289029 4v76:BZ (17.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    289030 4v77:AB (17.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    289031 4v77:AC (17.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    289032 4v77:AD (17.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    289033 4v77:AE (17.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    289034 4v77:AF (17.0) BS01 rna ? GO:0003735 ... P02358 24186064
    289035 4v77:AG (17.0) BS01 rna ? GO:0003723 ... P02359 24186064
    289036 4v77:AG (17.0) BS02 rna ? GO:0003723 ... P02359 24186064
    289037 4v77:AH (17.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    289038 4v77:AI (17.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    289039 4v77:AJ (17.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    289040 4v77:AK (17.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    289041 4v77:AK (17.0) BS02 rna ? GO:0002181 ... P0A7R9 24186064
    289042 4v77:AL (17.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    289043 4v77:AM (17.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    289044 4v77:AN (17.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    289045 4v77:AO (17.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    289046 4v77:AO (17.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    289047 4v77:AP (17.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    289048 4v77:AQ (17.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    289049 4v77:AR (17.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    289050 4v77:AS (17.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    289051 4v77:AT (17.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    289052 4v77:AU (17.0) BS01 rna ? GO:0003735 ... P68679 24186064
    289053 4v77:B0 (17.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    289054 4v77:B1 (17.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    289055 4v77:B2 (17.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    289056 4v77:B3 (17.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    289057 4v77:B4 (17.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    289058 4v77:B5 (17.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    289059 4v77:BC (17.0) BS01 rna ? GO:0000027 ... P60422 24186064
    289060 4v77:BC (17.0) BS02 rna ? GO:0000027 ... P60422 24186064
    289061 4v77:BD (17.0) BS01 rna ? GO:0000027 ... P60438 24186064
    289062 4v77:BE (17.0) BS01 rna ? GO:0001070 ... P60723 24186064
    289063 4v77:BF (17.0) BS01 rna ? GO:0000027 ... P62399 24186064
    289064 4v77:BF (17.0) BS02 rna ? GO:0000027 ... P62399 24186064
    289065 4v77:BF (17.0) BS03 rna ? GO:0000027 ... P62399 24186064
    289066 4v77:BG (17.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    289067 4v77:BH (17.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    289068 4v77:BI (17.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    289069 4v77:BJ (17.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    289070 4v77:BK (17.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    289071 4v77:BK (17.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    289072 4v77:BL (17.0) BS01 rna ? GO:0002181 ... P02413 24186064
    289073 4v77:BM (17.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    289074 4v77:BM (17.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    289075 4v77:BM (17.0) BS03 rna ? GO:0000027 ... P0ADY7 24186064
    289076 4v77:BN (17.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    289077 4v77:BO (17.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    289078 4v77:BO (17.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    289079 4v77:BP (17.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    289080 4v77:BP (17.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    289081 4v77:BQ (17.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    289082 4v77:BR (17.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    289083 4v77:BS (17.0) BS01 rna ? GO:0002181 ... P61175 24186064
    289084 4v77:BT (17.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    289085 4v77:BU (17.0) BS01 rna ? GO:0000027 ... P60624 24186064
    289086 4v77:BV (17.0) BS01 rna ? GO:0000027 ... P68919 24186064
    289087 4v77:BV (17.0) BS02 rna ? GO:0000027 ... P68919 24186064
    289088 4v77:BW (17.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    289089 4v77:BW (17.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    289090 4v77:BX (17.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    289091 4v77:BY (17.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    289092 4v77:BZ (17.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    289093 4v77:BZ (17.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    289094 4v78:AB (20.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    289095 4v78:AC (20.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    289096 4v78:AD (20.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    289097 4v78:AE (20.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    289098 4v78:AF (20.0) BS01 rna ? GO:0003735 ... P02358 24186064
    289099 4v78:AG (20.0) BS01 rna ? GO:0003723 ... P02359 24186064
    289100 4v78:AG (20.0) BS02 rna ? GO:0003723 ... P02359 24186064
    289101 4v78:AH (20.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    289102 4v78:AI (20.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    289103 4v78:AJ (20.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    289104 4v78:AK (20.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    289105 4v78:AK (20.0) BS02 rna ? GO:0002181 ... P0A7R9 24186064
    289106 4v78:AK (20.0) BS03 rna ? GO:0002181 ... P0A7R9 24186064
    289107 4v78:AL (20.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    289108 4v78:AL (20.0) BS02 rna ? GO:0000049 ... P0A7S3 24186064
    289109 4v78:AM (20.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    289110 4v78:AM (20.0) BS02 rna ? GO:0000049 ... P0A7S9 24186064
    289111 4v78:AN (20.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    289112 4v78:AO (20.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    289113 4v78:AO (20.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    289114 4v78:AP (20.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    289115 4v78:AQ (20.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    289116 4v78:AR (20.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    289117 4v78:AS (20.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    289118 4v78:AT (20.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    289119 4v78:AU (20.0) BS01 rna ? GO:0003735 ... P68679 24186064
    289120 4v78:AU (20.0) BS02 rna ? GO:0003735 ... P68679 24186064
    289121 4v78:B0 (20.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    289122 4v78:B1 (20.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    289123 4v78:B2 (20.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    289124 4v78:B3 (20.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    289125 4v78:B4 (20.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    289126 4v78:B5 (20.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    289127 4v78:BC (20.0) BS01 rna ? GO:0000027 ... P60422 24186064
    289128 4v78:BD (20.0) BS01 rna ? GO:0000027 ... P60438 24186064
    289129 4v78:BE (20.0) BS01 rna ? GO:0001070 ... P60723 24186064
    289130 4v78:BF (20.0) BS01 rna ? GO:0000027 ... P62399 24186064
    289131 4v78:BF (20.0) BS02 rna ? GO:0000027 ... P62399 24186064
    289132 4v78:BF (20.0) BS03 rna ? GO:0000027 ... P62399 24186064
    289133 4v78:BG (20.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    289134 4v78:BH (20.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    289135 4v78:BI (20.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    289136 4v78:BJ (20.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    289137 4v78:BK (20.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    289138 4v78:BK (20.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    289139 4v78:BL (20.0) BS01 rna ? GO:0002181 ... P02413 24186064
    289140 4v78:BM (20.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    289141 4v78:BM (20.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    289142 4v78:BN (20.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    289143 4v78:BO (20.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    289144 4v78:BO (20.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    289145 4v78:BP (20.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    289146 4v78:BP (20.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    289147 4v78:BQ (20.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    289148 4v78:BR (20.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    289149 4v78:BS (20.0) BS01 rna ? GO:0002181 ... P61175 24186064
    289150 4v78:BT (20.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    289151 4v78:BU (20.0) BS01 rna ? GO:0000027 ... P60624 24186064
    289152 4v78:BV (20.0) BS01 rna ? GO:0000027 ... P68919 24186064
    289153 4v78:BV (20.0) BS02 rna ? GO:0000027 ... P68919 24186064
    289154 4v78:BW (20.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    289155 4v78:BW (20.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    289156 4v78:BX (20.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    289157 4v78:BY (20.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    289158 4v78:BZ (20.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    289159 4v78:BZ (20.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    289160 4v79:AB (15.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    289161 4v79:AC (15.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    289162 4v79:AD (15.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    289163 4v79:AE (15.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    289164 4v79:AF (15.0) BS01 rna ? GO:0003735 ... P02358 24186064
    289165 4v79:AG (15.0) BS01 rna ? GO:0003723 ... P02359 24186064
    289166 4v79:AG (15.0) BS02 rna ? GO:0003723 ... P02359 24186064
    289167 4v79:AH (15.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    289168 4v79:AI (15.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    289169 4v79:AJ (15.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    289170 4v79:AK (15.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    289171 4v79:AL (15.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    289172 4v79:AM (15.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    289173 4v79:AM (15.0) BS02 rna ? GO:0000049 ... P0A7S9 24186064
    289174 4v79:AN (15.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    289175 4v79:AO (15.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    289176 4v79:AO (15.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    289177 4v79:AP (15.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    289178 4v79:AQ (15.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    289179 4v79:AR (15.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    289180 4v79:AS (15.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    289181 4v79:AT (15.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    289182 4v79:AU (15.0) BS01 rna ? GO:0003735 ... P68679 24186064
    289183 4v79:AU (15.0) BS02 rna ? GO:0003735 ... P68679 24186064
    289184 4v79:B0 (15.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    289185 4v79:B1 (15.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    289186 4v79:B2 (15.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    289187 4v79:B3 (15.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    289188 4v79:B4 (15.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    289189 4v79:B5 (15.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    289190 4v79:BC (15.0) BS01 rna ? GO:0000027 ... P60422 24186064
    289191 4v79:BD (15.0) BS01 rna ? GO:0000027 ... P60438 24186064
    289192 4v79:BE (15.0) BS01 rna ? GO:0001070 ... P60723 24186064
    289193 4v79:BF (15.0) BS01 rna ? GO:0000027 ... P62399 24186064
    289194 4v79:BF (15.0) BS02 rna ? GO:0000027 ... P62399 24186064
    289195 4v79:BG (15.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    289196 4v79:BH (15.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    289197 4v79:BI (15.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    289198 4v79:BJ (15.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    289199 4v79:BK (15.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    289200 4v79:BK (15.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).