SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    289601 4v7h:AC (8.9) BS01 rna N/A N/A N/A 20004163
    289602 4v7h:AD (8.9) BS01 rna N/A N/A N/A 20004163
    289603 4v7h:AE (8.9) BS01 rna N/A N/A N/A 20004163
    289604 4v7h:AG (8.9) BS01 rna N/A N/A N/A 20004163
    289605 4v7h:AH (8.9) BS01 rna N/A N/A N/A 20004163
    289606 4v7h:AI (8.9) BS01 rna N/A N/A N/A 20004163
    289607 4v7h:AJ (8.9) BS01 rna N/A N/A N/A 20004163
    289608 4v7h:AK (8.9) BS01 rna N/A N/A N/A 20004163
    289609 4v7h:AL (8.9) BS01 rna N/A N/A N/A 20004163
    289610 4v7h:AM (8.9) BS01 rna N/A N/A N/A 20004163
    289611 4v7h:AN (8.9) BS01 rna N/A N/A N/A 20004163
    289612 4v7h:AO (8.9) BS01 rna N/A N/A N/A 20004163
    289613 4v7h:AO (8.9) BS02 rna N/A N/A N/A 20004163
    289614 4v7h:AQ (8.9) BS01 rna N/A N/A N/A 20004163
    289615 4v7h:AR (8.9) BS01 rna N/A N/A N/A 20004163
    289616 4v7h:AS (8.9) BS01 rna N/A N/A N/A 20004163
    289617 4v7h:AT (8.9) BS01 rna N/A N/A N/A 20004163
    289618 4v7h:B0 (8.9) BS01 rna N/A N/A N/A 20004163
    289619 4v7h:B1 (8.9) BS01 rna N/A N/A N/A 20004163
    289620 4v7h:B1 (8.9) BS02 rna N/A N/A N/A 20004163
    289621 4v7h:B2 (8.9) BS01 rna N/A N/A N/A 20004163
    289622 4v7h:B8 (8.9) BS01 rna N/A N/A N/A 20004163
    289623 4v7h:B9 (8.9) BS01 rna N/A N/A N/A 20004163
    289624 4v7h:BA (8.9) BS01 rna N/A N/A N/A 20004163
    289625 4v7h:BA (8.9) BS02 rna N/A N/A N/A 20004163
    289626 4v7h:BB (8.9) BS01 rna N/A N/A N/A 20004163
    289627 4v7h:BB (8.9) BS02 rna N/A N/A N/A 20004163
    289628 4v7h:BC (8.9) BS01 rna N/A N/A N/A 20004163
    289629 4v7h:BD (8.9) BS01 rna N/A N/A N/A 20004163
    289630 4v7h:BD (8.9) BS02 rna N/A N/A N/A 20004163
    289631 4v7h:BE (8.9) BS01 rna N/A N/A N/A 20004163
    289632 4v7h:BE (8.9) BS02 rna N/A N/A N/A 20004163
    289633 4v7h:BF (8.9) BS01 rna N/A N/A N/A 20004163
    289634 4v7h:BF (8.9) BS02 rna N/A N/A N/A 20004163
    289635 4v7h:BG (8.9) BS01 rna N/A N/A N/A 20004163
    289636 4v7h:BG (8.9) BS02 rna N/A N/A N/A 20004163
    289637 4v7h:BH (8.9) BS01 rna N/A N/A N/A 20004163
    289638 4v7h:BI (8.9) BS01 rna N/A N/A N/A 20004163
    289639 4v7h:BI (8.9) BS02 rna N/A N/A N/A 20004163
    289640 4v7h:BJ (8.9) BS01 rna N/A N/A N/A 20004163
    289641 4v7h:BJ (8.9) BS02 rna N/A N/A N/A 20004163
    289642 4v7h:BK (8.9) BS01 rna N/A N/A N/A 20004163
    289643 4v7h:BL (8.9) BS01 rna N/A N/A N/A 20004163
    289644 4v7h:BL (8.9) BS02 rna N/A N/A N/A 20004163
    289645 4v7h:BM (8.9) BS01 rna N/A N/A N/A 20004163
    289646 4v7h:BN (8.9) BS01 rna N/A N/A N/A 20004163
    289647 4v7h:BN (8.9) BS02 rna N/A N/A N/A 20004163
    289648 4v7h:BO (8.9) BS01 rna N/A N/A N/A 20004163
    289649 4v7h:BP (8.9) BS01 rna N/A N/A N/A 20004163
    289650 4v7h:BP (8.9) BS02 rna N/A N/A N/A 20004163
    289651 4v7h:BQ (8.9) BS01 rna N/A N/A N/A 20004163
    289652 4v7h:BQ (8.9) BS02 rna N/A N/A N/A 20004163
    289653 4v7h:BR (8.9) BS01 rna N/A N/A N/A 20004163
    289654 4v7h:BR (8.9) BS02 rna N/A N/A N/A 20004163
    289655 4v7h:BS (8.9) BS01 rna N/A N/A N/A 20004163
    289656 4v7h:BT (8.9) BS01 rna N/A N/A N/A 20004163
    289657 4v7h:BT (8.9) BS02 rna N/A N/A N/A 20004163
    289658 4v7h:BU (8.9) BS01 rna N/A N/A N/A 20004163
    289659 4v7h:BU (8.9) BS02 rna N/A N/A N/A 20004163
    289660 4v7h:BV (8.9) BS01 rna N/A N/A N/A 20004163
    289661 4v7h:BW (8.9) BS01 rna N/A N/A N/A 20004163
    289662 4v7h:BX (8.9) BS01 rna N/A N/A N/A 20004163
    289663 4v7h:BX (8.9) BS02 rna N/A N/A N/A 20004163
    289664 4v7h:BY (8.9) BS01 rna N/A N/A N/A 20004163
    289665 4v7h:BY (8.9) BS02 rna N/A N/A N/A 20004163
    289666 4v7h:BZ (8.9) BS01 rna N/A N/A N/A 20004163
    289667 4v7h:BZ (8.9) BS02 rna N/A N/A N/A 20004163
    289668 4v7i:A0 (9.6) BS01 rna ? GO:0000027 ... P0A7N4 19913480
    289669 4v7i:A1 (9.6) BS01 rna ? GO:0000027 ... P0A7N9 19913480
    289670 4v7i:A2 (9.6) BS01 rna ? GO:0002181 ... P0A7P5 19913480
    289671 4v7i:A3 (9.6) BS01 rna ? GO:0002181 ... P0A7Q1 19913480
    289672 4v7i:A4 (9.6) BS01 rna ? GO:0002181 ... P0A7Q6 19913480
    289673 4v7i:A5 (9.6) BS01 rna ? GO:0000027 ... P0A7L0 19913480
    289674 4v7i:A6 (9.6) BS01 rna ? GO:0000027 ... P60422 19913480
    289675 4v7i:A6 (9.6) BS02 rna ? GO:0000027 ... P60422 19913480
    289676 4v7i:AA (9.6) BS01 rna N/A GO:0015031 ... N/A 19913480
    289677 4v7i:AD (9.6) BS01 rna ? GO:0000027 ... P60438 19913480
    289678 4v7i:AE (9.6) BS01 rna ? GO:0001070 ... P60723 19913480
    289679 4v7i:AF (9.6) BS01 rna ? GO:0000027 ... P62399 19913480
    289680 4v7i:AF (9.6) BS02 rna ? GO:0000027 ... P62399 19913480
    289681 4v7i:AG (9.6) BS01 rna ? GO:0000027 ... P0AG55 19913480
    289682 4v7i:AH (9.6) BS01 rna ? GO:0002181 ... P0A7R1 19913480
    289683 4v7i:AI (9.6) BS01 rna ? GO:0000027 ... P0A7J7 19913480
    289684 4v7i:AJ (9.6) BS01 rna ? GO:0002181 ... P0AA10 19913480
    289685 4v7i:AK (9.6) BS01 rna ? GO:0002181 ... P0ADY3 19913480
    289686 4v7i:AK (9.6) BS02 rna ? GO:0002181 ... P0ADY3 19913480
    289687 4v7i:AL (9.6) BS01 rna ? GO:0002181 ... P02413 19913480
    289688 4v7i:AM (9.6) BS01 rna ? GO:0000027 ... P0ADY7 19913480
    289689 4v7i:AM (9.6) BS02 rna ? GO:0000027 ... P0ADY7 19913480
    289690 4v7i:AN (9.6) BS01 rna ? GO:0000027 ... P0AG44 19913480
    289691 4v7i:AO (9.6) BS01 rna ? GO:0002181 ... P0C018 19913480
    289692 4v7i:AO (9.6) BS02 rna ? GO:0002181 ... P0C018 19913480
    289693 4v7i:AP (9.6) BS01 rna ? GO:0000027 ... P0A7K6 19913480
    289694 4v7i:AP (9.6) BS02 rna ? GO:0000027 ... P0A7K6 19913480
    289695 4v7i:AQ (9.6) BS01 rna ? GO:0000027 ... P0A7L3 19913480
    289696 4v7i:AR (9.6) BS01 rna ? GO:0002181 ... P0AG48 19913480
    289697 4v7i:AS (9.6) BS01 rna ? GO:0002181 ... P61175 19913480
    289698 4v7i:AT (9.6) BS01 rna ? GO:0000027 ... P0ADZ0 19913480
    289699 4v7i:AU (9.6) BS01 rna ? GO:0000027 ... P60624 19913480
    289700 4v7i:AV (9.6) BS01 rna ? GO:0000027 ... P68919 19913480
    289701 4v7i:AV (9.6) BS02 rna ? GO:0000027 ... P68919 19913480
    289702 4v7i:AW (9.6) BS01 rna ? GO:0000027 ... P0A7L8 19913480
    289703 4v7i:AW (9.6) BS02 rna ? GO:0000027 ... P0A7L8 19913480
    289704 4v7i:AX (9.6) BS01 rna ? GO:0000027 ... P0A7M2 19913480
    289705 4v7i:AY (9.6) BS01 rna ? GO:0000027 ... P0A7M6 19913480
    289706 4v7i:AZ (9.6) BS01 rna ? GO:0000027 ... P0AG51 19913480
    289707 4v7i:AZ (9.6) BS02 rna ? GO:0000027 ... P0AG51 19913480
    289708 4v7i:BB (9.6) BS01 rna ? GO:0000028 ... P0A7V0 19913480
    289709 4v7i:BC (9.6) BS01 rna ? GO:0000028 ... P0A7V3 19913480
    289710 4v7i:BD (9.6) BS01 rna ? GO:0000028 ... P0A7V8 19913480
    289711 4v7i:BE (9.6) BS01 rna ? GO:0000028 ... P0A7W1 19913480
    289712 4v7i:BF (9.6) BS01 rna ? GO:0002181 ... P02358 19913480
    289713 4v7i:BG (9.6) BS01 rna ? GO:0000028 ... P02359 19913480
    289714 4v7i:BH (9.6) BS01 rna ? GO:0000028 ... P0A7W7 19913480
    289715 4v7i:BI (9.6) BS01 rna ? GO:0000049 ... P0A7X3 19913480
    289716 4v7i:BJ (9.6) BS01 rna ? GO:0000049 ... P0A7R5 19913480
    289717 4v7i:BK (9.6) BS01 rna ? GO:0002181 ... P0A7R9 19913480
    289718 4v7i:BL (9.6) BS01 rna ? GO:0000049 ... P0A7S3 19913480
    289719 4v7i:BM (9.6) BS01 rna ? GO:0000049 ... P0A7S9 19913480
    289720 4v7i:BM (9.6) BS02 rna ? GO:0000049 ... P0A7S9 19913480
    289721 4v7i:BN (9.6) BS01 rna ? GO:0000028 ... P0AG59 19913480
    289722 4v7i:BO (9.6) BS01 rna ? GO:0003735 ... Q8X9M2 19913480
    289723 4v7i:BO (9.6) BS02 rna ? GO:0003735 ... Q8X9M2 19913480
    289724 4v7i:BP (9.6) BS01 rna ? GO:0000028 ... P0A7T3 19913480
    289725 4v7i:BQ (9.6) BS01 rna ? GO:0000028 ... P0AG63 19913480
    289726 4v7i:BR (9.6) BS01 rna ? GO:0002181 ... P0A7T7 19913480
    289727 4v7i:BS (9.6) BS01 rna ? GO:0000028 ... P0A7U3 19913480
    289728 4v7i:BT (9.6) BS01 rna ? GO:0000028 ... P0A7U7 19913480
    289729 4v7i:BU (9.6) BS01 rna ? GO:0000028 ... P68679 19913480
    289730 4v7j:A0 (3.3) BS01 rna ? GO:0003735 ... P60493 20005802
    289731 4v7j:A0 (3.3) BS02 rna ? GO:0003735 ... P60493 20005802
    289732 4v7j:A1 (3.3) BS01 rna ? GO:0003735 ... P60494 20005802
    289733 4v7j:A2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 20005802
    289734 4v7j:A3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 20005802
    289735 4v7j:A3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 20005802
    289736 4v7j:A4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 20005802
    289737 4v7j:A4 (3.3) BS02 ZN ? GO:0003735 ... Q5SJE1 20005802
    289738 4v7j:A5 (3.3) BS01 rna ? GO:0003735 ... P80339 20005802
    289739 4v7j:A6 (3.3) BS01 rna ? GO:0000049 ... P35871 20005802
    289740 4v7j:A7 (3.3) BS01 rna ? GO:0003735 ... P80340 20005802
    289741 4v7j:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 20005802
    289742 4v7j:A9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 20005802
    289743 4v7j:A9 (3.3) BS02 ZN ? GO:0003735 ... Q5SHR2 20005802
    289744 4v7j:AC (3.3) BS01 rna ? GO:0000049 ... Q5SLP7 20005802
    289745 4v7j:AC (3.3) BS02 rna ? GO:0000049 ... Q5SLP7 20005802
    289746 4v7j:AD (3.3) BS01 rna ? GO:0002181 ... P60405 20005802
    289747 4v7j:AD (3.3) BS02 MG ? GO:0002181 ... P60405 20005802
    289748 4v7j:AD (3.3) BS03 MG ? GO:0002181 ... P60405 20005802
    289749 4v7j:AE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 20005802
    289750 4v7j:AF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 20005802
    289751 4v7j:AG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 20005802
    289752 4v7j:AG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 20005802
    289753 4v7j:AG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 20005802
    289754 4v7j:AH (3.3) BS01 rna ? GO:0002181 ... P0DOY8 20005802
    289755 4v7j:AI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 20005802
    289756 4v7j:AJ (3.3) BS01 rna ? GO:0005840 ... Q8VVE3 20005802
    289757 4v7j:AN (3.3) BS01 rna ? GO:0003729 ... P60488 20005802
    289758 4v7j:AO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 20005802
    289759 4v7j:AO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 20005802
    289760 4v7j:AP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 20005802
    289761 4v7j:AQ (3.3) BS01 rna ? GO:0000049 ... P60489 20005802
    289762 4v7j:AQ (3.3) BS02 rna ? GO:0000049 ... P60489 20005802
    289763 4v7j:AR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 20005802
    289764 4v7j:AS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 20005802
    289765 4v7j:AS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 20005802
    289766 4v7j:AT (3.3) BS01 rna ? GO:0003735 ... P60490 20005802
    289767 4v7j:AT (3.3) BS02 rna ? GO:0003735 ... P60490 20005802
    289768 4v7j:AU (3.3) BS01 rna ? GO:0000027 ... P60491 20005802
    289769 4v7j:AV (3.3) BS01 rna ? GO:0003723 ... P60492 20005802
    289770 4v7j:AW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 20005802
    289771 4v7j:AX (3.3) BS01 rna ? GO:0003735 ... Q5SHP0 20005802
    289772 4v7j:AY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 20005802
    289773 4v7j:AZ (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 20005802
    289774 4v7j:AZ (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 20005802
    289775 4v7j:Ab (3.3) BS01 rna ? GO:0003735 ... P80371 20005802
    289776 4v7j:Ac (3.3) BS01 rna ? GO:0003676 ... P80372 20005802
    289777 4v7j:Ad (3.3) BS01 rna ? GO:0003723 ... P80373 20005802
    289778 4v7j:Ad (3.3) BS02 ZN ? GO:0003723 ... P80373 20005802
    289779 4v7j:Ae (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 20005802
    289780 4v7j:Af (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 20005802
    289781 4v7j:Ag (3.3) BS01 rna ? GO:0000049 ... P17291 20005802
    289782 4v7j:Ag (3.3) BS02 rna ? GO:0000049 ... P17291 20005802
    289783 4v7j:Ah (3.3) BS01 rna ? GO:0003735 ... P0DOY9 20005802
    289784 4v7j:Ai (3.3) BS01 rna ? GO:0000049 ... P80374 20005802
    289785 4v7j:Aj (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 20005802
    289786 4v7j:Aj (3.3) BS02 rna ? GO:0000049 ... Q5SHN7 20005802
    289787 4v7j:Ak (3.3) BS01 rna ? GO:0003735 ... P80376 20005802
    289788 4v7j:Al (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 20005802
    289789 4v7j:Am (3.3) BS01 rna ? GO:0000049 ... P80377 20005802
    289790 4v7j:An (3.3) BS01 rna ? GO:0003735 ... P0DOY6 20005802
    289791 4v7j:An (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 20005802
    289792 4v7j:Ao (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 20005802
    289793 4v7j:Ao (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 20005802
    289794 4v7j:Ap (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 20005802
    289795 4v7j:Aq (3.3) BS01 rna ? GO:0003735 ... P0DOY7 20005802
    289796 4v7j:Ar (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 20005802
    289797 4v7j:As (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 20005802
    289798 4v7j:At (3.3) BS01 rna ? GO:0003723 ... P80380 20005802
    289799 4v7j:Ay (3.3) BS01 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    289800 4v7j:Ay (3.3) BS02 rna 3.1.-.- GO:0000976 ... P0C077 20005802

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).