SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    290001 4v7k:Bp (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 20005802
    290002 4v7k:Bq (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    290003 4v7k:Br (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 20005802
    290004 4v7k:Bs (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 20005802
    290005 4v7k:Bt (3.6) BS01 rna ? GO:0003723 ... P80380 20005802
    290006 4v7k:By (3.6) BS01 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    290007 4v7k:By (3.6) BS02 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    290008 4v7k:By (3.6) BS03 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    290009 4v7l:AB (3.0) BS01 rna ? GO:0003735 ... P80371 20154709
    290010 4v7l:AC (3.0) BS01 rna ? GO:0003676 ... P80372 20154709
    290011 4v7l:AD (3.0) BS01 rna ? GO:0003723 ... P80373 20154709
    290012 4v7l:AD (3.0) BS02 ZN ? GO:0003723 ... P80373 20154709
    290013 4v7l:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    290014 4v7l:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    290015 4v7l:AF (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 20154709
    290016 4v7l:AG (3.0) BS01 rna ? GO:0000049 ... P17291 20154709
    290017 4v7l:AG (3.0) BS02 rna ? GO:0000049 ... P17291 20154709
    290018 4v7l:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    290019 4v7l:AI (3.0) BS01 rna ? GO:0000049 ... P80374 20154709
    290020 4v7l:AI (3.0) BS02 rna ? GO:0000049 ... P80374 20154709
    290021 4v7l:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    290022 4v7l:AK (3.0) BS01 rna ? GO:0003735 ... P80376 20154709
    290023 4v7l:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    290024 4v7l:AL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20154709
    290025 4v7l:AM (3.0) BS01 rna ? GO:0000049 ... P80377 20154709
    290026 4v7l:AM (3.0) BS02 rna ? GO:0000049 ... P80377 20154709
    290027 4v7l:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    290028 4v7l:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    290029 4v7l:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    290030 4v7l:AO (3.0) BS03 MG ? GO:0003735 ... Q5SJ76 20154709
    290031 4v7l:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    290032 4v7l:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    290033 4v7l:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    290034 4v7l:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    290035 4v7l:AT (3.0) BS01 rna ? GO:0003723 ... P80380 20154709
    290036 4v7l:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 20154709
    290037 4v7l:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 20154709
    290038 4v7l:B0 (3.0) BS03 rna ? GO:0003735 ... P60493 20154709
    290039 4v7l:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 20154709
    290040 4v7l:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    290041 4v7l:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    290042 4v7l:B3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    290043 4v7l:B4 (3.0) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    290044 4v7l:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 20154709
    290045 4v7l:B5 (3.0) BS02 ZN ? GO:0003735 ... P80339 20154709
    290046 4v7l:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 20154709
    290047 4v7l:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 20154709
    290048 4v7l:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    290049 4v7l:B9 (3.0) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    290050 4v7l:B9 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    290051 4v7l:BC (3.0) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    290052 4v7l:BD (3.0) BS01 rna ? GO:0002181 ... P60405 20154709
    290053 4v7l:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    290054 4v7l:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    290055 4v7l:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    290056 4v7l:BF (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 20154709
    290057 4v7l:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    290058 4v7l:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    290059 4v7l:BG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    290060 4v7l:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    290061 4v7l:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    290062 4v7l:BN (3.0) BS01 rna ? GO:0003729 ... P60488 20154709
    290063 4v7l:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    290064 4v7l:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    290065 4v7l:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    290066 4v7l:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 20154709
    290067 4v7l:BQ (3.0) BS02 MG ? GO:0000049 ... P60489 20154709
    290068 4v7l:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    290069 4v7l:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    290070 4v7l:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    290071 4v7l:BT (3.0) BS01 rna ? GO:0003735 ... P60490 20154709
    290072 4v7l:BT (3.0) BS02 rna ? GO:0003735 ... P60490 20154709
    290073 4v7l:BU (3.0) BS01 rna ? GO:0000027 ... P60491 20154709
    290074 4v7l:BV (3.0) BS01 rna ? GO:0003723 ... P60492 20154709
    290075 4v7l:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    290076 4v7l:BX (3.0) BS01 rna ? GO:0003735 ... Q5SHP0 20154709
    290077 4v7l:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    290078 4v7l:BY (3.0) BS02 MG ? GO:0003723 ... Q5SHP9 20154709
    290079 4v7l:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    290080 4v7l:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    290081 4v7l:CB (3.0) BS01 rna ? GO:0003735 ... P80371 20154709
    290082 4v7l:CC (3.0) BS01 rna ? GO:0003676 ... P80372 20154709
    290083 4v7l:CD (3.0) BS01 rna ? GO:0003723 ... P80373 20154709
    290084 4v7l:CD (3.0) BS02 ZN ? GO:0003723 ... P80373 20154709
    290085 4v7l:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    290086 4v7l:CE (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 20154709
    290087 4v7l:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    290088 4v7l:CG (3.0) BS01 rna ? GO:0000049 ... P17291 20154709
    290089 4v7l:CG (3.0) BS02 rna ? GO:0000049 ... P17291 20154709
    290090 4v7l:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    290091 4v7l:CI (3.0) BS01 rna ? GO:0000049 ... P80374 20154709
    290092 4v7l:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    290093 4v7l:CK (3.0) BS01 rna ? GO:0003735 ... P80376 20154709
    290094 4v7l:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    290095 4v7l:CM (3.0) BS01 rna ? GO:0000049 ... P80377 20154709
    290096 4v7l:CM (3.0) BS02 rna ? GO:0000049 ... P80377 20154709
    290097 4v7l:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    290098 4v7l:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    290099 4v7l:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    290100 4v7l:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    290101 4v7l:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    290102 4v7l:CQ (3.0) BS02 MG N/A GO:0003735 ... N/A 20154709
    290103 4v7l:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    290104 4v7l:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    290105 4v7l:CT (3.0) BS01 rna ? GO:0003723 ... P80380 20154709
    290106 4v7l:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 20154709
    290107 4v7l:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 20154709
    290108 4v7l:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 20154709
    290109 4v7l:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    290110 4v7l:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    290111 4v7l:D3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    290112 4v7l:D4 (3.0) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    290113 4v7l:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 20154709
    290114 4v7l:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 20154709
    290115 4v7l:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 20154709
    290116 4v7l:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    290117 4v7l:D9 (3.0) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    290118 4v7l:D9 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    290119 4v7l:DC (3.0) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    290120 4v7l:DD (3.0) BS01 rna ? GO:0002181 ... P60405 20154709
    290121 4v7l:DD (3.0) BS02 MG ? GO:0002181 ... P60405 20154709
    290122 4v7l:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    290123 4v7l:DE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 20154709
    290124 4v7l:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    290125 4v7l:DF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    290126 4v7l:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    290127 4v7l:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    290128 4v7l:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    290129 4v7l:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    290130 4v7l:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    290131 4v7l:DN (3.0) BS01 rna ? GO:0003729 ... P60488 20154709
    290132 4v7l:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    290133 4v7l:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    290134 4v7l:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    290135 4v7l:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 20154709
    290136 4v7l:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 20154709
    290137 4v7l:DQ (3.0) BS03 rna ? GO:0000049 ... P60489 20154709
    290138 4v7l:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    290139 4v7l:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    290140 4v7l:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    290141 4v7l:DT (3.0) BS01 rna ? GO:0003735 ... P60490 20154709
    290142 4v7l:DT (3.0) BS02 rna ? GO:0003735 ... P60490 20154709
    290143 4v7l:DU (3.0) BS01 rna ? GO:0000027 ... P60491 20154709
    290144 4v7l:DV (3.0) BS01 rna ? GO:0003723 ... P60492 20154709
    290145 4v7l:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    290146 4v7l:DX (3.0) BS01 rna ? GO:0003735 ... Q5SHP0 20154709
    290147 4v7l:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    290148 4v7l:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    290149 4v7l:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    290150 4v7l:DZ (3.0) BS03 MG ? GO:0003723 ... Q5SHZ1 20154709
    290151 4v7m:AB (3.45) BS01 rna ? GO:0003735 ... P80371 20154709
    290152 4v7m:AC (3.45) BS01 rna ? GO:0003676 ... P80372 20154709
    290153 4v7m:AD (3.45) BS01 rna ? GO:0003723 ... P80373 20154709
    290154 4v7m:AD (3.45) BS02 ZN ? GO:0003723 ... P80373 20154709
    290155 4v7m:AE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    290156 4v7m:AF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    290157 4v7m:AG (3.45) BS01 rna ? GO:0000049 ... P17291 20154709
    290158 4v7m:AG (3.45) BS02 rna ? GO:0000049 ... P17291 20154709
    290159 4v7m:AH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    290160 4v7m:AI (3.45) BS01 rna ? GO:0000049 ... P80374 20154709
    290161 4v7m:AJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    290162 4v7m:AK (3.45) BS01 rna ? GO:0003735 ... P80376 20154709
    290163 4v7m:AL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    290164 4v7m:AM (3.45) BS01 rna ? GO:0000049 ... P80377 20154709
    290165 4v7m:AM (3.45) BS02 rna ? GO:0000049 ... P80377 20154709
    290166 4v7m:AM (3.45) BS03 rna ? GO:0000049 ... P80377 20154709
    290167 4v7m:AN (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    290168 4v7m:AO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    290169 4v7m:AO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    290170 4v7m:AP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    290171 4v7m:AQ (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    290172 4v7m:AR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    290173 4v7m:AS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    290174 4v7m:AT (3.45) BS01 rna ? GO:0003723 ... P80380 20154709
    290175 4v7m:B0 (3.45) BS01 rna ? GO:0003735 ... P60493 20154709
    290176 4v7m:B0 (3.45) BS02 rna ? GO:0003735 ... P60493 20154709
    290177 4v7m:B0 (3.45) BS03 rna ? GO:0003735 ... P60493 20154709
    290178 4v7m:B1 (3.45) BS01 rna ? GO:0003735 ... P60494 20154709
    290179 4v7m:B2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    290180 4v7m:B3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    290181 4v7m:B3 (3.45) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    290182 4v7m:B4 (3.45) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    290183 4v7m:B5 (3.45) BS01 rna ? GO:0003735 ... P80339 20154709
    290184 4v7m:B5 (3.45) BS02 ZN ? GO:0003735 ... P80339 20154709
    290185 4v7m:B6 (3.45) BS01 rna ? GO:0000049 ... P35871 20154709
    290186 4v7m:B7 (3.45) BS01 rna ? GO:0003735 ... P80340 20154709
    290187 4v7m:B8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    290188 4v7m:B9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    290189 4v7m:B9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    290190 4v7m:BC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    290191 4v7m:BD (3.45) BS01 rna ? GO:0002181 ... P60405 20154709
    290192 4v7m:BD (3.45) BS02 MG ? GO:0002181 ... P60405 20154709
    290193 4v7m:BD (3.45) BS03 MG ? GO:0002181 ... P60405 20154709
    290194 4v7m:BE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    290195 4v7m:BF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    290196 4v7m:BF (3.45) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    290197 4v7m:BG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    290198 4v7m:BG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    290199 4v7m:BG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    290200 4v7m:BH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).