SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    290201 4v7m:BI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    290202 4v7m:BI (3.45) BS02 rna ? GO:0003735 ... Q5SLQ1 20154709
    290203 4v7m:BN (3.45) BS01 rna ? GO:0003729 ... P60488 20154709
    290204 4v7m:BO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    290205 4v7m:BO (3.45) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    290206 4v7m:BP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    290207 4v7m:BQ (3.45) BS01 rna ? GO:0000049 ... P60489 20154709
    290208 4v7m:BQ (3.45) BS02 rna ? GO:0000049 ... P60489 20154709
    290209 4v7m:BR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    290210 4v7m:BS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    290211 4v7m:BS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    290212 4v7m:BT (3.45) BS01 rna ? GO:0003735 ... P60490 20154709
    290213 4v7m:BT (3.45) BS02 rna ? GO:0003735 ... P60490 20154709
    290214 4v7m:BU (3.45) BS01 rna ? GO:0000027 ... P60491 20154709
    290215 4v7m:BU (3.45) BS02 MG ? GO:0000027 ... P60491 20154709
    290216 4v7m:BV (3.45) BS01 rna ? GO:0003723 ... P60492 20154709
    290217 4v7m:BW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    290218 4v7m:BX (3.45) BS01 rna ? GO:0003735 ... Q5SHP0 20154709
    290219 4v7m:BY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    290220 4v7m:BZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    290221 4v7m:BZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    290222 4v7m:CB (3.45) BS01 rna ? GO:0003735 ... P80371 20154709
    290223 4v7m:CC (3.45) BS01 rna ? GO:0003676 ... P80372 20154709
    290224 4v7m:CD (3.45) BS01 rna ? GO:0003723 ... P80373 20154709
    290225 4v7m:CE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    290226 4v7m:CF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    290227 4v7m:CG (3.45) BS01 rna ? GO:0000049 ... P17291 20154709
    290228 4v7m:CG (3.45) BS02 rna ? GO:0000049 ... P17291 20154709
    290229 4v7m:CH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    290230 4v7m:CI (3.45) BS01 rna ? GO:0000049 ... P80374 20154709
    290231 4v7m:CJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    290232 4v7m:CK (3.45) BS01 rna ? GO:0003735 ... P80376 20154709
    290233 4v7m:CK (3.45) BS02 MG ? GO:0003735 ... P80376 20154709
    290234 4v7m:CL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    290235 4v7m:CM (3.45) BS01 rna ? GO:0000049 ... P80377 20154709
    290236 4v7m:CN (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    290237 4v7m:CO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    290238 4v7m:CO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    290239 4v7m:CP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    290240 4v7m:CQ (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    290241 4v7m:CR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    290242 4v7m:CS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    290243 4v7m:CT (3.45) BS01 rna ? GO:0003723 ... P80380 20154709
    290244 4v7m:D0 (3.45) BS01 rna ? GO:0003735 ... P60493 20154709
    290245 4v7m:D0 (3.45) BS02 rna ? GO:0003735 ... P60493 20154709
    290246 4v7m:D0 (3.45) BS03 rna ? GO:0003735 ... P60493 20154709
    290247 4v7m:D1 (3.45) BS01 rna ? GO:0003735 ... P60494 20154709
    290248 4v7m:D2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    290249 4v7m:D3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    290250 4v7m:D3 (3.45) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    290251 4v7m:D4 (3.45) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    290252 4v7m:D5 (3.45) BS01 rna ? GO:0003735 ... P80339 20154709
    290253 4v7m:D5 (3.45) BS02 ZN ? GO:0003735 ... P80339 20154709
    290254 4v7m:D6 (3.45) BS01 rna ? GO:0000049 ... P35871 20154709
    290255 4v7m:D7 (3.45) BS01 rna ? GO:0003735 ... P80340 20154709
    290256 4v7m:D8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    290257 4v7m:D9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    290258 4v7m:D9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    290259 4v7m:DC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    290260 4v7m:DD (3.45) BS01 rna ? GO:0002181 ... P60405 20154709
    290261 4v7m:DD (3.45) BS02 MG ? GO:0002181 ... P60405 20154709
    290262 4v7m:DD (3.45) BS03 MG ? GO:0002181 ... P60405 20154709
    290263 4v7m:DE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    290264 4v7m:DF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    290265 4v7m:DF (3.45) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    290266 4v7m:DG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    290267 4v7m:DG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    290268 4v7m:DG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    290269 4v7m:DH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    290270 4v7m:DI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    290271 4v7m:DN (3.45) BS01 rna ? GO:0003729 ... P60488 20154709
    290272 4v7m:DO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    290273 4v7m:DO (3.45) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    290274 4v7m:DO (3.45) BS03 MG ? GO:0003735 ... Q5SHP8 20154709
    290275 4v7m:DP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    290276 4v7m:DQ (3.45) BS01 rna ? GO:0000049 ... P60489 20154709
    290277 4v7m:DQ (3.45) BS02 rna ? GO:0000049 ... P60489 20154709
    290278 4v7m:DQ (3.45) BS03 rna ? GO:0000049 ... P60489 20154709
    290279 4v7m:DR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    290280 4v7m:DS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    290281 4v7m:DS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    290282 4v7m:DT (3.45) BS01 rna ? GO:0003735 ... P60490 20154709
    290283 4v7m:DT (3.45) BS02 rna ? GO:0003735 ... P60490 20154709
    290284 4v7m:DU (3.45) BS01 rna ? GO:0000027 ... P60491 20154709
    290285 4v7m:DV (3.45) BS01 rna ? GO:0003723 ... P60492 20154709
    290286 4v7m:DW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    290287 4v7m:DX (3.45) BS01 rna ? GO:0003735 ... Q5SHP0 20154709
    290288 4v7m:DY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    290289 4v7m:DZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    290290 4v7m:DZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    290291 4v7n:AA (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290292 4v7n:AA (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290293 4v7n:AB (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290294 4v7n:AB (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290295 4v7n:AC (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290296 4v7n:AC (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290297 4v7n:AD (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290298 4v7n:AD (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290299 4v7n:AE (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290300 4v7n:AE (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290301 4v7n:AF (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290302 4v7n:AF (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290303 4v7n:AG (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290304 4v7n:AG (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290305 4v7n:AH (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290306 4v7n:AH (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290307 4v7n:AI (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290308 4v7n:AI (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290309 4v7n:AJ (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290310 4v7n:AJ (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290311 4v7n:AK (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290312 4v7n:AK (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290313 4v7n:AL (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290314 4v7n:AL (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290315 4v7n:AM (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290316 4v7n:AM (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290317 4v7n:AN (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290318 4v7n:AN (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290319 4v7n:AO (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290320 4v7n:AO (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290321 4v7n:AP (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290322 4v7n:AP (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290323 4v7n:AQ (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290324 4v7n:AQ (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290325 4v7n:AR (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290326 4v7n:AR (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290327 4v7n:BA (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290328 4v7n:BA (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290329 4v7n:BB (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290330 4v7n:BB (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290331 4v7n:BC (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290332 4v7n:BC (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290333 4v7n:BD (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290334 4v7n:BD (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290335 4v7n:BE (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290336 4v7n:BE (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290337 4v7n:BF (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290338 4v7n:BF (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290339 4v7n:BG (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290340 4v7n:BG (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290341 4v7n:BH (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290342 4v7n:BH (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290343 4v7n:BI (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290344 4v7n:BI (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290345 4v7n:BJ (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290346 4v7n:BJ (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290347 4v7n:BK (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290348 4v7n:BK (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290349 4v7n:BL (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290350 4v7n:BL (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290351 4v7n:BM (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290352 4v7n:BM (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290353 4v7n:BN (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290354 4v7n:BN (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290355 4v7n:BO (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290356 4v7n:BO (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290357 4v7n:BP (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290358 4v7n:BP (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290359 4v7n:BQ (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290360 4v7n:BQ (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290361 4v7n:BR (2.3) BS01 NMG 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290362 4v7n:BR (2.3) BS02 ADP 2.7.3.1 GO:0003824 ... Q6AW42 20121101
    290363 4v7p:AB (3.62) BS01 rna ? GO:0003735 ... P62662 20588254
    290364 4v7p:AC (3.62) BS01 rna ? GO:0003676 ... P62663 20588254
    290365 4v7p:AD (3.62) BS01 rna ? GO:0003723 ... P62664 20588254
    290366 4v7p:AE (3.62) BS01 rna ? GO:0003723 ... P62665 20588254
    290367 4v7p:AF (3.62) BS01 rna ? GO:0003735 ... P62666 20588254
    290368 4v7p:AG (3.62) BS01 rna ? GO:0000049 ... P62667 20588254
    290369 4v7p:AH (3.62) BS01 rna ? GO:0003735 ... P62668 20588254
    290370 4v7p:AI (3.62) BS01 rna ? GO:0000049 ... P62669 20588254
    290371 4v7p:AI (3.62) BS02 rna ? GO:0000049 ... P62669 20588254
    290372 4v7p:AJ (3.62) BS01 rna ? GO:0000049 ... P62653 20588254
    290373 4v7p:AK (3.62) BS01 rna ? GO:0003735 ... P62654 20588254
    290374 4v7p:AL (3.62) BS01 rna ? GO:0000049 ... P61941 20588254
    290375 4v7p:AM (3.62) BS01 rna ? GO:0000049 ... P62655 20588254
    290376 4v7p:AN (3.62) BS01 rna ? GO:0003735 ... P62656 20588254
    290377 4v7p:AN (3.62) BS02 ZN ? GO:0003735 ... P62656 20588254
    290378 4v7p:AO (3.62) BS01 rna ? GO:0003735 ... P62657 20588254
    290379 4v7p:AO (3.62) BS02 rna ? GO:0003735 ... P62657 20588254
    290380 4v7p:AP (3.62) BS01 rna ? GO:0003735 ... P62238 20588254
    290381 4v7p:AQ (3.62) BS01 rna ? GO:0003735 ... P62658 20588254
    290382 4v7p:AR (3.62) BS01 rna ? GO:0003735 ... P62659 20588254
    290383 4v7p:AS (3.62) BS01 rna ? GO:0003723 ... P62660 20588254
    290384 4v7p:AT (3.62) BS01 rna ? GO:0003723 ... P62661 20588254
    290385 4v7p:AV (3.62) BS01 rna ? GO:0003747 ... Q72HB8 20588254
    290386 4v7p:AV (3.62) BS02 rna ? GO:0003747 ... Q72HB8 20588254
    290387 4v7p:AV (3.62) BS03 rna ? GO:0003747 ... Q72HB8 20588254
    290388 4v7p:AV (3.62) BS04 rna ? GO:0003747 ... Q72HB8 20588254
    290389 4v7p:B2 (3.62) BS01 rna ? GO:0003735 ... P62652 20588254
    290390 4v7p:B3 (3.62) BS01 rna ? GO:0003735 ... Q72GW3 20588254
    290391 4v7p:B4 (3.62) BS01 rna ? GO:0003735 ... P80340 20588254
    290392 4v7p:B5 (3.62) BS01 rna ? GO:0003735 ... Q72L77 20588254
    290393 4v7p:BC (3.62) BS01 rna ? GO:0002181 ... Q72I07 20588254
    290394 4v7p:BC (3.62) BS02 rna ? GO:0002181 ... Q72I07 20588254
    290395 4v7p:BD (3.62) BS01 rna ? GO:0003735 ... Q72I04 20588254
    290396 4v7p:BE (3.62) BS01 rna ? GO:0003735 ... Q72I05 20588254
    290397 4v7p:BF (3.62) BS01 rna ? GO:0000049 ... Q72I16 20588254
    290398 4v7p:BF (3.62) BS02 rna ? GO:0000049 ... Q72I16 20588254
    290399 4v7p:BF (3.62) BS03 rna ? GO:0000049 ... Q72I16 20588254
    290400 4v7p:BG (3.62) BS01 rna ? GO:0002181 ... Q72I19 20588254

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).