SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    291001 4v7v:AH (3.2891) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    291002 4v7v:AI (3.2891) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    291003 4v7v:AJ (3.2891) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    291004 4v7v:AK (3.2891) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    291005 4v7v:AL (3.2891) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    291006 4v7v:AM (3.2891) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    291007 4v7v:AN (3.2891) BS01 rna ? GO:0000028 ... P0AG59 20876128
    291008 4v7v:AO (3.2891) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    291009 4v7v:AO (3.2891) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    291010 4v7v:AP (3.2891) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    291011 4v7v:AQ (3.2891) BS01 rna ? GO:0000028 ... P0AG63 20876128
    291012 4v7v:AR (3.2891) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    291013 4v7v:AS (3.2891) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    291014 4v7v:AT (3.2891) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    291015 4v7v:AU (3.2891) BS01 rna ? GO:0003735 ... P68679 20876128
    291016 4v7v:B0 (3.2891) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    291017 4v7v:B1 (3.2891) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    291018 4v7v:B2 (3.2891) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    291019 4v7v:B3 (3.2891) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    291020 4v7v:B4 (3.2891) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    291021 4v7v:B4 (3.2891) BS02 ZN ? GO:0002181 ... P0A7Q6 20876128
    291022 4v7v:BC (3.2891) BS01 rna ? GO:0000027 ... P60422 20876128
    291023 4v7v:BD (3.2891) BS01 rna ? GO:0000027 ... P60438 20876128
    291024 4v7v:BE (3.2891) BS01 rna ? GO:0001070 ... P60723 20876128
    291025 4v7v:BF (3.2891) BS01 rna ? GO:0000027 ... P62399 20876128
    291026 4v7v:BF (3.2891) BS02 rna ? GO:0000027 ... P62399 20876128
    291027 4v7v:BG (3.2891) BS01 rna ? GO:0000027 ... P0AG55 20876128
    291028 4v7v:BH (3.2891) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    291029 4v7v:BI (3.2891) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    291030 4v7v:BJ (3.2891) BS01 rna ? GO:0002181 ... P0AA10 20876128
    291031 4v7v:BK (3.2891) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    291032 4v7v:BK (3.2891) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    291033 4v7v:BL (3.2891) BS01 rna ? GO:0002181 ... P02413 20876128
    291034 4v7v:BM (3.2891) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    291035 4v7v:BM (3.2891) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    291036 4v7v:BN (3.2891) BS01 rna ? GO:0000027 ... P0AG44 20876128
    291037 4v7v:BO (3.2891) BS01 rna ? GO:0002181 ... P0C018 20876128
    291038 4v7v:BO (3.2891) BS02 rna ? GO:0002181 ... P0C018 20876128
    291039 4v7v:BP (3.2891) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    291040 4v7v:BP (3.2891) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    291041 4v7v:BQ (3.2891) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    291042 4v7v:BR (3.2891) BS01 rna ? GO:0002181 ... P0AG48 20876128
    291043 4v7v:BS (3.2891) BS01 rna ? GO:0002181 ... P61175 20876128
    291044 4v7v:BT (3.2891) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    291045 4v7v:BU (3.2891) BS01 rna ? GO:0000027 ... P60624 20876128
    291046 4v7v:BV (3.2891) BS01 rna ? GO:0000027 ... P68919 20876128
    291047 4v7v:BV (3.2891) BS02 rna ? GO:0000027 ... P68919 20876128
    291048 4v7v:BW (3.2891) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    291049 4v7v:BX (3.2891) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    291050 4v7v:BY (3.2891) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    291051 4v7v:BZ (3.2891) BS01 rna ? GO:0000027 ... P0AG51 20876128
    291052 4v7v:BZ (3.2891) BS02 rna ? GO:0000027 ... P0AG51 20876128
    291053 4v7v:CB (3.2891) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    291054 4v7v:CB (3.2891) BS02 rna ? GO:0000028 ... P0A7V0 20876128
    291055 4v7v:CC (3.2891) BS01 rna ? GO:0003676 ... P0A7V3 20876128
    291056 4v7v:CD (3.2891) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    291057 4v7v:CE (3.2891) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    291058 4v7v:CF (3.2891) BS01 rna ? GO:0003735 ... P02358 20876128
    291059 4v7v:CG (3.2891) BS01 rna ? GO:0003723 ... P02359 20876128
    291060 4v7v:CH (3.2891) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    291061 4v7v:CI (3.2891) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    291062 4v7v:CJ (3.2891) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    291063 4v7v:CK (3.2891) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    291064 4v7v:CL (3.2891) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    291065 4v7v:CM (3.2891) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    291066 4v7v:CN (3.2891) BS01 rna ? GO:0000028 ... P0AG59 20876128
    291067 4v7v:CO (3.2891) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    291068 4v7v:CO (3.2891) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    291069 4v7v:CP (3.2891) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    291070 4v7v:CQ (3.2891) BS01 rna ? GO:0000028 ... P0AG63 20876128
    291071 4v7v:CR (3.2891) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    291072 4v7v:CS (3.2891) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    291073 4v7v:CT (3.2891) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    291074 4v7v:CU (3.2891) BS01 rna ? GO:0003735 ... P68679 20876128
    291075 4v7v:D0 (3.2891) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    291076 4v7v:D1 (3.2891) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    291077 4v7v:D2 (3.2891) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    291078 4v7v:D3 (3.2891) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    291079 4v7v:D4 (3.2891) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    291080 4v7v:DC (3.2891) BS01 rna ? GO:0000027 ... P60422 20876128
    291081 4v7v:DD (3.2891) BS01 rna ? GO:0000027 ... P60438 20876128
    291082 4v7v:DE (3.2891) BS01 rna ? GO:0001070 ... P60723 20876128
    291083 4v7v:DF (3.2891) BS01 rna ? GO:0000027 ... P62399 20876128
    291084 4v7v:DF (3.2891) BS02 rna ? GO:0000027 ... P62399 20876128
    291085 4v7v:DG (3.2891) BS01 rna ? GO:0000027 ... P0AG55 20876128
    291086 4v7v:DH (3.2891) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    291087 4v7v:DI (3.2891) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    291088 4v7v:DJ (3.2891) BS01 rna ? GO:0002181 ... P0AA10 20876128
    291089 4v7v:DK (3.2891) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    291090 4v7v:DK (3.2891) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    291091 4v7v:DL (3.2891) BS01 rna ? GO:0002181 ... P02413 20876128
    291092 4v7v:DM (3.2891) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    291093 4v7v:DM (3.2891) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    291094 4v7v:DN (3.2891) BS01 rna ? GO:0000027 ... P0AG44 20876128
    291095 4v7v:DO (3.2891) BS01 rna ? GO:0002181 ... P0C018 20876128
    291096 4v7v:DO (3.2891) BS02 rna ? GO:0002181 ... P0C018 20876128
    291097 4v7v:DP (3.2891) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    291098 4v7v:DP (3.2891) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    291099 4v7v:DQ (3.2891) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    291100 4v7v:DR (3.2891) BS01 rna ? GO:0002181 ... P0AG48 20876128
    291101 4v7v:DS (3.2891) BS01 rna ? GO:0002181 ... P61175 20876128
    291102 4v7v:DT (3.2891) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    291103 4v7v:DU (3.2891) BS01 rna ? GO:0000027 ... P60624 20876128
    291104 4v7v:DV (3.2891) BS01 rna ? GO:0000027 ... P68919 20876128
    291105 4v7v:DV (3.2891) BS02 rna ? GO:0000027 ... P68919 20876128
    291106 4v7v:DW (3.2891) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    291107 4v7v:DW (3.2891) BS02 rna ? GO:0000027 ... P0A7L8 20876128
    291108 4v7v:DX (3.2891) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    291109 4v7v:DY (3.2891) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    291110 4v7v:DZ (3.2891) BS01 rna ? GO:0000027 ... P0AG51 20876128
    291111 4v7v:DZ (3.2891) BS02 rna ? GO:0000027 ... P0AG51 20876128
    291112 4v7w:AB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    291113 4v7w:AC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    291114 4v7w:AD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    291115 4v7w:AD (3.0) BS02 ZN ? GO:0003723 ... P80373 20876130
    291116 4v7w:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    291117 4v7w:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    291118 4v7w:AG (3.0) BS01 rna ? GO:0000049 ... P17291 20876130
    291119 4v7w:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291120 4v7w:AI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    291121 4v7w:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    291122 4v7w:AK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    291123 4v7w:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    291124 4v7w:AL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    291125 4v7w:AM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    291126 4v7w:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291127 4v7w:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    291128 4v7w:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    291129 4v7w:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    291130 4v7w:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291131 4v7w:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    291132 4v7w:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    291133 4v7w:AT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    291134 4v7w:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    291135 4v7w:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    291136 4v7w:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    291137 4v7w:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    291138 4v7w:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    291139 4v7w:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    291140 4v7w:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    291141 4v7w:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    291142 4v7w:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    291143 4v7w:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    291144 4v7w:BD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    291145 4v7w:BD (3.0) BS02 rna ? GO:0002181 ... P60405 20876130
    291146 4v7w:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    291147 4v7w:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    291148 4v7w:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    291149 4v7w:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    291150 4v7w:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291151 4v7w:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    291152 4v7w:BN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    291153 4v7w:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    291154 4v7w:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    291155 4v7w:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    291156 4v7w:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    291157 4v7w:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    291158 4v7w:BQ (3.0) BS03 MG ? GO:0000049 ... P60489 20876130
    291159 4v7w:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    291160 4v7w:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    291161 4v7w:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    291162 4v7w:BT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    291163 4v7w:BT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    291164 4v7w:BU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    291165 4v7w:BV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    291166 4v7w:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    291167 4v7w:BX (3.0) BS01 rna ? GO:0003735 ... Q5SHP0 20876130
    291168 4v7w:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    291169 4v7w:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    291170 4v7w:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    291171 4v7w:CB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    291172 4v7w:CC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    291173 4v7w:CD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    291174 4v7w:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    291175 4v7w:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    291176 4v7w:CG (3.0) BS01 rna ? GO:0000049 ... P17291 20876130
    291177 4v7w:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291178 4v7w:CI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    291179 4v7w:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    291180 4v7w:CK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    291181 4v7w:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    291182 4v7w:CL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    291183 4v7w:CM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    291184 4v7w:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291185 4v7w:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    291186 4v7w:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    291187 4v7w:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    291188 4v7w:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291189 4v7w:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    291190 4v7w:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    291191 4v7w:CT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    291192 4v7w:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    291193 4v7w:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    291194 4v7w:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    291195 4v7w:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    291196 4v7w:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    291197 4v7w:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    291198 4v7w:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    291199 4v7w:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    291200 4v7w:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).