SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    291201 4v7w:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    291202 4v7w:DD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    291203 4v7w:DD (3.0) BS02 MG ? GO:0002181 ... P60405 20876130
    291204 4v7w:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    291205 4v7w:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    291206 4v7w:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    291207 4v7w:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    291208 4v7w:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291209 4v7w:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    291210 4v7w:DN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    291211 4v7w:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    291212 4v7w:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    291213 4v7w:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    291214 4v7w:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    291215 4v7w:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    291216 4v7w:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    291217 4v7w:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    291218 4v7w:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    291219 4v7w:DT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    291220 4v7w:DT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    291221 4v7w:DU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    291222 4v7w:DV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    291223 4v7w:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    291224 4v7w:DX (3.0) BS01 rna ? GO:0003735 ... Q5SHP0 20876130
    291225 4v7w:DX (3.0) BS02 MG ? GO:0003735 ... Q5SHP0 20876130
    291226 4v7w:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    291227 4v7w:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    291228 4v7w:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    291229 4v7x:AB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    291230 4v7x:AC (3.0) BS01 rna ? GO:0003729 ... P80372 20876130
    291231 4v7x:AD (3.0) BS01 rna ? GO:0003735 ... P80373 20876130
    291232 4v7x:AD (3.0) BS02 ZN ? GO:0003735 ... P80373 20876130
    291233 4v7x:AE (3.0) BS01 rna ? GO:0005840 ... Q5SHQ5 20876130
    291234 4v7x:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    291235 4v7x:AG (3.0) BS01 rna ? GO:0000049 ... P17291 20876130
    291236 4v7x:AH (3.0) BS01 rna N/A N/A N/A 20876130
    291237 4v7x:AI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    291238 4v7x:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    291239 4v7x:AK (3.0) BS01 rna ? GO:0005840 ... P80376 20876130
    291240 4v7x:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    291241 4v7x:AL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    291242 4v7x:AM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    291243 4v7x:AN (3.0) BS01 rna N/A N/A N/A 20876130
    291244 4v7x:AO (3.0) BS01 rna ? GO:0005737 ... Q5SJ76 20876130
    291245 4v7x:AO (3.0) BS02 rna ? GO:0005737 ... Q5SJ76 20876130
    291246 4v7x:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    291247 4v7x:AQ (3.0) BS01 rna N/A N/A N/A 20876130
    291248 4v7x:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    291249 4v7x:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    291250 4v7x:AT (3.0) BS01 rna ? GO:0005840 ... P80380 20876130
    291251 4v7x:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    291252 4v7x:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    291253 4v7x:B1 (3.0) BS01 rna ? GO:0005840 ... P60494 20876130
    291254 4v7x:B2 (3.0) BS01 rna ? GO:0005840 ... Q5SHP6 20876130
    291255 4v7x:B3 (3.0) BS01 rna ? GO:0005840 ... Q5SHQ6 20876130
    291256 4v7x:B3 (3.0) BS02 rna ? GO:0005840 ... Q5SHQ6 20876130
    291257 4v7x:B4 (3.0) BS01 rna ? GO:0005840 ... Q5SJE1 20876130
    291258 4v7x:B5 (3.0) BS01 rna ? GO:0005840 ... P80339 20876130
    291259 4v7x:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    291260 4v7x:B7 (3.0) BS01 rna ? GO:0005840 ... P80340 20876130
    291261 4v7x:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    291262 4v7x:BD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    291263 4v7x:BD (3.0) BS02 rna ? GO:0002181 ... P60405 20876130
    291264 4v7x:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    291265 4v7x:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    291266 4v7x:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 20876130
    291267 4v7x:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    291268 4v7x:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    291269 4v7x:BH (3.0) BS01 rna N/A N/A N/A 20876130
    291270 4v7x:BI (3.0) BS01 rna ? GO:0005840 ... Q5SLQ1 20876130
    291271 4v7x:BN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    291272 4v7x:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    291273 4v7x:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    291274 4v7x:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    291275 4v7x:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    291276 4v7x:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    291277 4v7x:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    291278 4v7x:BS (3.0) BS01 rna ? GO:0005737 ... Q5SHQ4 20876130
    291279 4v7x:BS (3.0) BS02 rna ? GO:0005737 ... Q5SHQ4 20876130
    291280 4v7x:BT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    291281 4v7x:BT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    291282 4v7x:BU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    291283 4v7x:BV (3.0) BS01 rna ? GO:0003735 ... P60492 20876130
    291284 4v7x:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    291285 4v7x:BX (3.0) BS01 rna ? GO:0005840 ... Q5SHP0 20876130
    291286 4v7x:BY (3.0) BS01 rna ? GO:0005840 ... Q5SHP9 20876130
    291287 4v7x:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    291288 4v7x:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    291289 4v7x:CB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    291290 4v7x:CC (3.0) BS01 rna ? GO:0003729 ... P80372 20876130
    291291 4v7x:CD (3.0) BS01 rna ? GO:0003735 ... P80373 20876130
    291292 4v7x:CD (3.0) BS02 ZN ? GO:0003735 ... P80373 20876130
    291293 4v7x:CE (3.0) BS01 rna ? GO:0005840 ... Q5SHQ5 20876130
    291294 4v7x:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    291295 4v7x:CG (3.0) BS01 rna ? GO:0000049 ... P17291 20876130
    291296 4v7x:CH (3.0) BS01 rna N/A N/A N/A 20876130
    291297 4v7x:CI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    291298 4v7x:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    291299 4v7x:CK (3.0) BS01 rna ? GO:0005840 ... P80376 20876130
    291300 4v7x:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    291301 4v7x:CM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    291302 4v7x:CN (3.0) BS01 rna N/A N/A N/A 20876130
    291303 4v7x:CN (3.0) BS02 ZN N/A N/A N/A 20876130
    291304 4v7x:CO (3.0) BS01 rna ? GO:0005737 ... Q5SJ76 20876130
    291305 4v7x:CO (3.0) BS02 rna ? GO:0005737 ... Q5SJ76 20876130
    291306 4v7x:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    291307 4v7x:CQ (3.0) BS01 rna N/A N/A N/A 20876130
    291308 4v7x:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    291309 4v7x:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    291310 4v7x:CT (3.0) BS01 rna ? GO:0005840 ... P80380 20876130
    291311 4v7x:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    291312 4v7x:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    291313 4v7x:D1 (3.0) BS01 rna ? GO:0005840 ... P60494 20876130
    291314 4v7x:D2 (3.0) BS01 rna ? GO:0005840 ... Q5SHP6 20876130
    291315 4v7x:D3 (3.0) BS01 rna ? GO:0005840 ... Q5SHQ6 20876130
    291316 4v7x:D3 (3.0) BS02 rna ? GO:0005840 ... Q5SHQ6 20876130
    291317 4v7x:D4 (3.0) BS01 rna ? GO:0005840 ... Q5SJE1 20876130
    291318 4v7x:D5 (3.0) BS01 rna ? GO:0005840 ... P80339 20876130
    291319 4v7x:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    291320 4v7x:D7 (3.0) BS01 rna ? GO:0005840 ... P80340 20876130
    291321 4v7x:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    291322 4v7x:DD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    291323 4v7x:DD (3.0) BS02 MG ? GO:0002181 ... P60405 20876130
    291324 4v7x:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    291325 4v7x:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    291326 4v7x:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    291327 4v7x:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    291328 4v7x:DH (3.0) BS01 rna N/A N/A N/A 20876130
    291329 4v7x:DI (3.0) BS01 rna ? GO:0005840 ... Q5SLQ1 20876130
    291330 4v7x:DN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    291331 4v7x:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    291332 4v7x:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    291333 4v7x:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    291334 4v7x:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    291335 4v7x:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    291336 4v7x:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    291337 4v7x:DS (3.0) BS01 rna ? GO:0005737 ... Q5SHQ4 20876130
    291338 4v7x:DS (3.0) BS02 rna ? GO:0005737 ... Q5SHQ4 20876130
    291339 4v7x:DT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    291340 4v7x:DT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    291341 4v7x:DU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    291342 4v7x:DV (3.0) BS01 rna ? GO:0003735 ... P60492 20876130
    291343 4v7x:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    291344 4v7x:DX (3.0) BS01 rna ? GO:0005840 ... Q5SHP0 20876130
    291345 4v7x:DY (3.0) BS01 rna ? GO:0005840 ... Q5SHP9 20876130
    291346 4v7x:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    291347 4v7x:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    291348 4v7y:AB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    291349 4v7y:AC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    291350 4v7y:AD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    291351 4v7y:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    291352 4v7y:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    291353 4v7y:AG (3.0) BS01 rna ? GO:0000049 ... P17291 20876130
    291354 4v7y:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291355 4v7y:AI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    291356 4v7y:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    291357 4v7y:AK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    291358 4v7y:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    291359 4v7y:AL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    291360 4v7y:AM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    291361 4v7y:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291362 4v7y:AN (3.0) BS02 ZN N/A GO:0003735 ... N/A 20876130
    291363 4v7y:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    291364 4v7y:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    291365 4v7y:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    291366 4v7y:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291367 4v7y:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    291368 4v7y:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    291369 4v7y:AT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    291370 4v7y:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    291371 4v7y:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    291372 4v7y:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    291373 4v7y:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    291374 4v7y:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    291375 4v7y:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    291376 4v7y:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    291377 4v7y:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    291378 4v7y:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    291379 4v7y:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    291380 4v7y:BD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    291381 4v7y:BD (3.0) BS02 MG ? GO:0002181 ... P60405 20876130
    291382 4v7y:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    291383 4v7y:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    291384 4v7y:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 20876130
    291385 4v7y:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    291386 4v7y:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    291387 4v7y:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    291388 4v7y:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    291389 4v7y:BN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    291390 4v7y:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    291391 4v7y:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    291392 4v7y:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    291393 4v7y:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    291394 4v7y:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    291395 4v7y:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    291396 4v7y:BR (3.0) BS02 MG ? GO:0003735 ... Q9Z9H5 20876130
    291397 4v7y:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    291398 4v7y:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    291399 4v7y:BT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    291400 4v7y:BT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).