SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    292201 4v87:DD (3.1) BS01 rna ? GO:0002181 ... P60405 22437501
    292202 4v87:DD (3.1) BS02 rna ? GO:0002181 ... P60405 22437501
    292203 4v87:DD (3.1) BS03 MG ? GO:0002181 ... P60405 22437501
    292204 4v87:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    292205 4v87:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    292206 4v87:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    292207 4v87:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    292208 4v87:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    292209 4v87:DK (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    292210 4v87:DK (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    292211 4v87:DM (3.1) BS01 rna ? GO:0003729 ... P60488 22437501
    292212 4v87:DN (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    292213 4v87:DN (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    292214 4v87:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    292215 4v87:DP (3.1) BS01 rna ? GO:0000049 ... P60489 22437501
    292216 4v87:DP (3.1) BS02 rna ? GO:0000049 ... P60489 22437501
    292217 4v87:DP (3.1) BS03 rna ? GO:0000049 ... P60489 22437501
    292218 4v87:DP (3.1) BS04 rna ? GO:0000049 ... P60489 22437501
    292219 4v87:DQ (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    292220 4v87:DQ (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    292221 4v87:DR (3.1) BS01 rna ? GO:0003735 ... P60490 22437501
    292222 4v87:DR (3.1) BS02 rna ? GO:0003735 ... P60490 22437501
    292223 4v87:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    292224 4v87:DT (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 22437501
    292225 4v87:DU (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    292226 4v87:DV (3.1) BS01 rna ? GO:0003735 ... Q5SHZ1 22437501
    292227 4v87:DV (3.1) BS02 rna ? GO:0003735 ... Q5SHZ1 22437501
    292228 4v87:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    292229 4v87:DX (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    292230 4v87:DX (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    292231 4v87:DZ (3.1) BS01 rna ? GO:0003735 ... P60494 22437501
    292232 4v88:AA (3.0) BS01 rna ? GO:0000028 ... P32905 22096102
    292233 4v88:AB (3.0) BS01 rna ? GO:0000462 ... P33442 22096102
    292234 4v88:AC (3.0) BS01 rna ? GO:0000054 ... P25443 22096102
    292235 4v88:AC (3.0) BS02 OHX ? GO:0000054 ... P25443 22096102
    292236 4v88:AD (3.0) BS01 rna ? GO:0000054 ... P05750 22096102
    292237 4v88:AE (3.0) BS01 rna ? GO:0002181 ... P0CX35 22096102
    292238 4v88:AE (3.0) BS02 MG ? GO:0002181 ... P0CX35 22096102
    292239 4v88:AF (3.0) BS01 rna ? GO:0000028 ... P26783 22096102
    292240 4v88:AG (3.0) BS01 rna ? GO:0000462 ... P0CX37 22096102
    292241 4v88:AH (3.0) BS01 rna ? GO:0002181 ... P26786 22096102
    292242 4v88:AI (3.0) BS01 rna ? GO:0000462 ... P0CX39 22096102
    292243 4v88:AI (3.0) BS02 rna ? GO:0000462 ... P0CX39 22096102
    292244 4v88:AI (3.0) BS03 OHX ? GO:0000462 ... P0CX39 22096102
    292245 4v88:AI (3.0) BS04 MG ? GO:0000462 ... P0CX39 22096102
    292246 4v88:AJ (3.0) BS01 rna ? GO:0000462 ... O13516 22096102
    292247 4v88:AK (3.0) BS01 rna ? GO:0000054 ... Q08745 22096102
    292248 4v88:AL (3.0) BS01 rna ? GO:0000028 ... P0CX47 22096102
    292249 4v88:AL (3.0) BS02 MG ? GO:0000028 ... P0CX47 22096102
    292250 4v88:AL (3.0) BS03 MG ? GO:0000028 ... P0CX47 22096102
    292251 4v88:AM (3.0) BS01 rna ? GO:0000028 ... P48589 22096102
    292252 4v88:AN (3.0) BS01 rna ? GO:0000462 ... P05756 22096102
    292253 4v88:AN (3.0) BS02 rna ? GO:0000462 ... P05756 22096102
    292254 4v88:AN (3.0) BS03 OHX ? GO:0000462 ... P05756 22096102
    292255 4v88:AO (3.0) BS01 rna ? GO:0000028 ... P06367 22096102
    292256 4v88:AP (3.0) BS01 rna ? GO:0000028 ... Q01855 22096102
    292257 4v88:AP (3.0) BS02 rna ? GO:0000028 ... Q01855 22096102
    292258 4v88:AP (3.0) BS03 OHX ? GO:0000028 ... Q01855 22096102
    292259 4v88:AQ (3.0) BS01 rna ? GO:0000462 ... P0CX51 22096102
    292260 4v88:AR (3.0) BS01 rna ? GO:0000028 ... P02407 22096102
    292261 4v88:AS (3.0) BS01 rna ? GO:0000054 ... P0CX55 22096102
    292262 4v88:AS (3.0) BS02 MG ? GO:0000054 ... P0CX55 22096102
    292263 4v88:AT (3.0) BS01 rna ? GO:0000028 ... P07280 22096102
    292264 4v88:AU (3.0) BS01 rna ? GO:0000462 ... P38701 22096102
    292265 4v88:AW (3.0) BS01 rna ? GO:0002181 ... P0C0W1 22096102
    292266 4v88:AX (3.0) BS01 rna ? GO:0000462 ... P0CX29 22096102
    292267 4v88:AY (3.0) BS01 rna ? GO:0000462 ... P0CX31 22096102
    292268 4v88:AZ (3.0) BS01 rna ? GO:0002181 ... Q3E792 22096102
    292269 4v88:Aa (3.0) BS01 rna ? GO:0000054 ... P39938 22096102
    292270 4v88:Aa (3.0) BS02 ZN ? GO:0000054 ... P39938 22096102
    292271 4v88:Ab (3.0) BS01 rna ? GO:0000028 ... P35997 22096102
    292272 4v88:Ac (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 22096102
    292273 4v88:Ad (3.0) BS01 rna ? GO:0002181 ... P41057 22096102
    292274 4v88:Ad (3.0) BS02 OHX ? GO:0002181 ... P41057 22096102
    292275 4v88:Ad (3.0) BS03 MG ? GO:0002181 ... P41057 22096102
    292276 4v88:Ad (3.0) BS04 MG ? GO:0002181 ... P41057 22096102
    292277 4v88:Ad (3.0) BS05 ZN ? GO:0002181 ... P41057 22096102
    292278 4v88:Ae (3.0) BS01 rna ? GO:0002181 ... P0CX33 22096102
    292279 4v88:Af (3.0) BS01 rna ? GO:0000028 ... P05759 22096102
    292280 4v88:Af (3.0) BS02 ZN ? GO:0000028 ... P05759 22096102
    292281 4v88:Ag (3.0) BS01 rna ? GO:0001965 ... P38011 22096102
    292282 4v88:Ag (3.0) BS02 OHX ? GO:0001965 ... P38011 22096102
    292283 4v88:Ah (3.0) BS01 rna ? GO:0000723 ... P39015 22096102
    292284 4v88:Ah (3.0) BS02 rna ? GO:0000723 ... P39015 22096102
    292285 4v88:BA (3.0) BS01 rna ? GO:0002181 ... P0CX45 22096102
    292286 4v88:BA (3.0) BS02 rna ? GO:0002181 ... P0CX45 22096102
    292287 4v88:BA (3.0) BS03 MG ? GO:0002181 ... P0CX45 22096102
    292288 4v88:BA (3.0) BS04 MG ? GO:0002181 ... P0CX45 22096102
    292289 4v88:BA (3.0) BS05 MG ? GO:0002181 ... P0CX45 22096102
    292290 4v88:BA (3.0) BS06 MG ? GO:0002181 ... P0CX45 22096102
    292291 4v88:BB (3.0) BS01 rna ? GO:0000027 ... P14126 22096102
    292292 4v88:BB (3.0) BS02 OHX ? GO:0000027 ... P14126 22096102
    292293 4v88:BB (3.0) BS03 OHX ? GO:0000027 ... P14126 22096102
    292294 4v88:BB (3.0) BS04 MG ? GO:0000027 ... P14126 22096102
    292295 4v88:BC (3.0) BS01 rna ? GO:0002181 ... P10664 22096102
    292296 4v88:BC (3.0) BS02 rna ? GO:0002181 ... P10664 22096102
    292297 4v88:BC (3.0) BS03 MG ? GO:0002181 ... P10664 22096102
    292298 4v88:BC (3.0) BS04 OHX ? GO:0002181 ... P10664 22096102
    292299 4v88:BC (3.0) BS05 MG ? GO:0002181 ... P10664 22096102
    292300 4v88:BC (3.0) BS06 MG ? GO:0002181 ... P10664 22096102
    292301 4v88:BC (3.0) BS07 MG ? GO:0002181 ... P10664 22096102
    292302 4v88:BC (3.0) BS08 MG ? GO:0002181 ... P10664 22096102
    292303 4v88:BD (3.0) BS01 rna ? GO:0000027 ... P26321 22096102
    292304 4v88:BD (3.0) BS02 rna ? GO:0000027 ... P26321 22096102
    292305 4v88:BD (3.0) BS03 OHX ? GO:0000027 ... P26321 22096102
    292306 4v88:BE (3.0) BS01 rna ? GO:0000027 ... Q02326 22096102
    292307 4v88:BE (3.0) BS02 MG ? GO:0000027 ... Q02326 22096102
    292308 4v88:BF (3.0) BS01 rna ? GO:0000463 ... P05737 22096102
    292309 4v88:BF (3.0) BS02 rna ? GO:0000463 ... P05737 22096102
    292310 4v88:BF (3.0) BS03 MG ? GO:0000463 ... P05737 22096102
    292311 4v88:BG (3.0) BS01 rna ? GO:0000470 ... P17076 22096102
    292312 4v88:BG (3.0) BS02 rna ? GO:0000470 ... P17076 22096102
    292313 4v88:BH (3.0) BS01 rna ? GO:0002181 ... P05738 22096102
    292314 4v88:BI (3.0) BS01 rna ? GO:0000027 ... P41805 22096102
    292315 4v88:BI (3.0) BS02 rna ? GO:0000027 ... P41805 22096102
    292316 4v88:BI (3.0) BS03 MG ? GO:0000027 ... P41805 22096102
    292317 4v88:BI (3.0) BS04 OHX ? GO:0000027 ... P41805 22096102
    292318 4v88:BI (3.0) BS05 OHX ? GO:0000027 ... P41805 22096102
    292319 4v88:BI (3.0) BS06 MG ? GO:0000027 ... P41805 22096102
    292320 4v88:BI (3.0) BS07 MG ? GO:0000027 ... P41805 22096102
    292321 4v88:BJ (3.0) BS01 rna ? GO:0000027 ... P0C0W9 22096102
    292322 4v88:BJ (3.0) BS02 rna ? GO:0000027 ... P0C0W9 22096102
    292323 4v88:BL (3.0) BS01 rna ? GO:0002181 ... Q12690 22096102
    292324 4v88:BL (3.0) BS02 rna ? GO:0002181 ... Q12690 22096102
    292325 4v88:BL (3.0) BS03 MG ? GO:0002181 ... Q12690 22096102
    292326 4v88:BL (3.0) BS04 MG ? GO:0002181 ... Q12690 22096102
    292327 4v88:BM (3.0) BS01 rna ? GO:0000027 ... P36105 22096102
    292328 4v88:BN (3.0) BS01 rna ? GO:0002181 ... P05748 22096102
    292329 4v88:BN (3.0) BS02 rna ? GO:0002181 ... P05748 22096102
    292330 4v88:BN (3.0) BS03 OHX ? GO:0002181 ... P05748 22096102
    292331 4v88:BN (3.0) BS04 MG ? GO:0002181 ... P05748 22096102
    292332 4v88:BN (3.0) BS05 MG ? GO:0002181 ... P05748 22096102
    292333 4v88:BN (3.0) BS06 MG ? GO:0002181 ... P05748 22096102
    292334 4v88:BO (3.0) BS01 rna ? GO:0000470 ... P26784 22096102
    292335 4v88:BO (3.0) BS02 MG ? GO:0000470 ... P26784 22096102
    292336 4v88:BO (3.0) BS03 MG ? GO:0000470 ... P26784 22096102
    292337 4v88:BO (3.0) BS04 MG ? GO:0000470 ... P26784 22096102
    292338 4v88:BO (3.0) BS05 MG ? GO:0000470 ... P26784 22096102
    292339 4v88:BO (3.0) BS06 MG ? GO:0000470 ... P26784 22096102
    292340 4v88:BO (3.0) BS07 MG ? GO:0000470 ... P26784 22096102
    292341 4v88:BP (3.0) BS01 rna ? GO:0000448 ... P05740 22096102
    292342 4v88:BP (3.0) BS02 rna ? GO:0000448 ... P05740 22096102
    292343 4v88:BP (3.0) BS03 MG ? GO:0000448 ... P05740 22096102
    292344 4v88:BP (3.0) BS04 MG ? GO:0000448 ... P05740 22096102
    292345 4v88:BP (3.0) BS05 OHX ? GO:0000448 ... P05740 22096102
    292346 4v88:BP (3.0) BS06 OHX ? GO:0000448 ... P05740 22096102
    292347 4v88:BP (3.0) BS07 MG ? GO:0000448 ... P05740 22096102
    292348 4v88:BP (3.0) BS08 MG ? GO:0000448 ... P05740 22096102
    292349 4v88:BQ (3.0) BS01 rna ? GO:0002181 ... P0CX49 22096102
    292350 4v88:BQ (3.0) BS02 MG ? GO:0002181 ... P0CX49 22096102
    292351 4v88:BQ (3.0) BS03 MG ? GO:0002181 ... P0CX49 22096102
    292352 4v88:BQ (3.0) BS04 MG ? GO:0002181 ... P0CX49 22096102
    292353 4v88:BR (3.0) BS01 rna ? GO:0002181 ... P0CX82 22096102
    292354 4v88:BR (3.0) BS02 rna ? GO:0002181 ... P0CX82 22096102
    292355 4v88:BR (3.0) BS03 OHX ? GO:0002181 ... P0CX82 22096102
    292356 4v88:BR (3.0) BS04 OHX ? GO:0002181 ... P0CX82 22096102
    292357 4v88:BR (3.0) BS05 MG ? GO:0002181 ... P0CX82 22096102
    292358 4v88:BR (3.0) BS06 MG ? GO:0002181 ... P0CX82 22096102
    292359 4v88:BS (3.0) BS01 rna ? GO:0002181 ... P0CX23 22096102
    292360 4v88:BS (3.0) BS02 rna ? GO:0002181 ... P0CX23 22096102
    292361 4v88:BS (3.0) BS03 MG ? GO:0002181 ... P0CX23 22096102
    292362 4v88:BT (3.0) BS01 rna ? GO:0002181 ... Q02753 22096102
    292363 4v88:BT (3.0) BS02 rna ? GO:0002181 ... Q02753 22096102
    292364 4v88:BT (3.0) BS03 OHX ? GO:0002181 ... Q02753 22096102
    292365 4v88:BT (3.0) BS04 MG ? GO:0002181 ... Q02753 22096102
    292366 4v88:BU (3.0) BS01 rna ? GO:0002181 ... P05749 22096102
    292367 4v88:BV (3.0) BS01 rna ? GO:0002181 ... P0CX41 22096102
    292368 4v88:BV (3.0) BS02 rna ? GO:0002181 ... P0CX41 22096102
    292369 4v88:BV (3.0) BS03 MG ? GO:0002181 ... P0CX41 22096102
    292370 4v88:BW (3.0) BS01 rna ? GO:0002181 ... P04449 22096102
    292371 4v88:BW (3.0) BS02 rna ? GO:0002181 ... P04449 22096102
    292372 4v88:BX (3.0) BS01 rna ? GO:0000027 ... P04456 22096102
    292373 4v88:BX (3.0) BS02 rna ? GO:0000027 ... P04456 22096102
    292374 4v88:BY (3.0) BS01 rna ? GO:0002181 ... P05743 22096102
    292375 4v88:BY (3.0) BS02 rna ? GO:0002181 ... P05743 22096102
    292376 4v88:BY (3.0) BS03 MG ? GO:0002181 ... P05743 22096102
    292377 4v88:BZ (3.0) BS01 rna ? GO:0002181 ... P0C2H6 22096102
    292378 4v88:Ba (3.0) BS01 rna ? GO:0002181 ... P02406 22096102
    292379 4v88:Ba (3.0) BS02 MG ? GO:0002181 ... P02406 22096102
    292380 4v88:Ba (3.0) BS03 MG ? GO:0002181 ... P02406 22096102
    292381 4v88:Ba (3.0) BS04 MG ? GO:0002181 ... P02406 22096102
    292382 4v88:Ba (3.0) BS05 MG ? GO:0002181 ... P02406 22096102
    292383 4v88:Ba (3.0) BS06 MG ? GO:0002181 ... P02406 22096102
    292384 4v88:Bb (3.0) BS01 rna ? GO:0002181 ... P05747 22096102
    292385 4v88:Bb (3.0) BS02 OHX ? GO:0002181 ... P05747 22096102
    292386 4v88:Bc (3.0) BS01 rna ? GO:0002181 ... P14120 22096102
    292387 4v88:Bd (3.0) BS01 rna ? GO:0002181 ... P0C2H8 22096102
    292388 4v88:Bd (3.0) BS02 MG ? GO:0002181 ... P0C2H8 22096102
    292389 4v88:Bd (3.0) BS03 MG ? GO:0002181 ... P0C2H8 22096102
    292390 4v88:Be (3.0) BS01 rna ? GO:0002181 ... P38061 22096102
    292391 4v88:Be (3.0) BS02 MG ? GO:0002181 ... P38061 22096102
    292392 4v88:Be (3.0) BS03 MG ? GO:0002181 ... P38061 22096102
    292393 4v88:Be (3.0) BS04 MG ? GO:0002181 ... P38061 22096102
    292394 4v88:Bf (3.0) BS01 rna ? GO:0000027 ... P05744 22096102
    292395 4v88:Bf (3.0) BS02 MG ? GO:0000027 ... P05744 22096102
    292396 4v88:Bf (3.0) BS03 OHX ? GO:0000027 ... P05744 22096102
    292397 4v88:Bf (3.0) BS04 MG ? GO:0000027 ... P05744 22096102
    292398 4v88:Bg (3.0) BS01 rna ? GO:0002181 ... P87262 22096102
    292399 4v88:Bg (3.0) BS02 MG ? GO:0002181 ... P87262 22096102
    292400 4v88:Bh (3.0) BS01 rna ? GO:0000463 ... P0CX84 22096102

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).