SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    292401 4v88:Bh (3.0) BS02 rna ? GO:0000463 ... P0CX84 22096102
    292402 4v88:Bi (3.0) BS01 rna ? GO:0002181 ... P05745 22096102
    292403 4v88:Bj (3.0) BS01 rna ? GO:0000448 ... P49166 22096102
    292404 4v88:Bj (3.0) BS02 rna ? GO:0000448 ... P49166 22096102
    292405 4v88:Bj (3.0) BS03 OHX ? GO:0000448 ... P49166 22096102
    292406 4v88:Bj (3.0) BS04 OHX ? GO:0000448 ... P49166 22096102
    292407 4v88:Bj (3.0) BS05 OHX ? GO:0000448 ... P49166 22096102
    292408 4v88:Bj (3.0) BS06 MG ? GO:0000448 ... P49166 22096102
    292409 4v88:Bj (3.0) BS07 MG ? GO:0000448 ... P49166 22096102
    292410 4v88:Bj (3.0) BS08 MG ? GO:0000448 ... P49166 22096102
    292411 4v88:Bj (3.0) BS09 MG ? GO:0000448 ... P49166 22096102
    292412 4v88:Bj (3.0) BS10 ZN ? GO:0000448 ... P49166 22096102
    292413 4v88:Bk (3.0) BS01 rna ? GO:0002181 ... P49167 22096102
    292414 4v88:Bl (3.0) BS01 rna ? GO:0002181 ... P04650 22096102
    292415 4v88:Bl (3.0) BS02 rna ? GO:0002181 ... P04650 22096102
    292416 4v88:Bl (3.0) BS03 OHX ? GO:0002181 ... P04650 22096102
    292417 4v88:Bl (3.0) BS04 MG ? GO:0002181 ... P04650 22096102
    292418 4v88:Bm (3.0) BS01 rna ? GO:0000027 ... P0CH08 22096102
    292419 4v88:Bm (3.0) BS02 MG ? GO:0000027 ... P0CH08 22096102
    292420 4v88:Bm (3.0) BS03 ZN ? GO:0000027 ... P0CH08 22096102
    292421 4v88:Bo (3.0) BS01 rna ? GO:0002181 ... P0CX27 22096102
    292422 4v88:Bo (3.0) BS02 OHX ? GO:0002181 ... P0CX27 22096102
    292423 4v88:Bo (3.0) BS03 ZN ? GO:0002181 ... P0CX27 22096102
    292424 4v88:Bp (3.0) BS01 rna ? GO:0002181 ... P0CX25 22096102
    292425 4v88:Bp (3.0) BS02 ZN ? GO:0002181 ... P0CX25 22096102
    292426 4v88:CA (3.0) BS01 rna ? GO:0000028 ... P32905 22096102
    292427 4v88:CB (3.0) BS01 rna ? GO:0000462 ... P33442 22096102
    292428 4v88:CB (3.0) BS02 OHX ? GO:0000462 ... P33442 22096102
    292429 4v88:CC (3.0) BS01 rna ? GO:0000054 ... P25443 22096102
    292430 4v88:CD (3.0) BS01 rna ? GO:0000054 ... P05750 22096102
    292431 4v88:CE (3.0) BS01 rna ? GO:0002181 ... P0CX35 22096102
    292432 4v88:CF (3.0) BS01 rna ? GO:0000028 ... P26783 22096102
    292433 4v88:CF (3.0) BS02 MG ? GO:0000028 ... P26783 22096102
    292434 4v88:CG (3.0) BS01 rna ? GO:0000462 ... P0CX37 22096102
    292435 4v88:CH (3.0) BS01 rna ? GO:0002181 ... P26786 22096102
    292436 4v88:CI (3.0) BS01 rna ? GO:0000462 ... P0CX39 22096102
    292437 4v88:CI (3.0) BS02 rna ? GO:0000462 ... P0CX39 22096102
    292438 4v88:CI (3.0) BS03 OHX ? GO:0000462 ... P0CX39 22096102
    292439 4v88:CJ (3.0) BS01 rna ? GO:0000462 ... O13516 22096102
    292440 4v88:CJ (3.0) BS02 OHX ? GO:0000462 ... O13516 22096102
    292441 4v88:CK (3.0) BS01 rna ? GO:0000054 ... Q08745 22096102
    292442 4v88:CL (3.0) BS01 rna ? GO:0000028 ... P0CX47 22096102
    292443 4v88:CM (3.0) BS01 rna ? GO:0000028 ... P48589 22096102
    292444 4v88:CN (3.0) BS01 rna ? GO:0000462 ... P05756 22096102
    292445 4v88:CN (3.0) BS02 rna ? GO:0000462 ... P05756 22096102
    292446 4v88:CN (3.0) BS03 OHX ? GO:0000462 ... P05756 22096102
    292447 4v88:CO (3.0) BS01 rna ? GO:0000028 ... P06367 22096102
    292448 4v88:CP (3.0) BS01 rna ? GO:0000028 ... Q01855 22096102
    292449 4v88:CP (3.0) BS02 OHX ? GO:0000028 ... Q01855 22096102
    292450 4v88:CP (3.0) BS03 OHX ? GO:0000028 ... Q01855 22096102
    292451 4v88:CQ (3.0) BS01 rna ? GO:0000462 ... P0CX51 22096102
    292452 4v88:CR (3.0) BS01 rna ? GO:0000028 ... P02407 22096102
    292453 4v88:CS (3.0) BS01 rna ? GO:0000054 ... P0CX55 22096102
    292454 4v88:CS (3.0) BS02 MG ? GO:0000054 ... P0CX55 22096102
    292455 4v88:CT (3.0) BS01 rna ? GO:0000028 ... P07280 22096102
    292456 4v88:CT (3.0) BS02 MG ? GO:0000028 ... P07280 22096102
    292457 4v88:CU (3.0) BS01 rna ? GO:0000462 ... P38701 22096102
    292458 4v88:CW (3.0) BS01 rna ? GO:0002181 ... P0C0W1 22096102
    292459 4v88:CX (3.0) BS01 rna ? GO:0000462 ... P0CX29 22096102
    292460 4v88:CY (3.0) BS01 rna ? GO:0000462 ... P0CX31 22096102
    292461 4v88:CZ (3.0) BS01 rna ? GO:0002181 ... Q3E792 22096102
    292462 4v88:Ca (3.0) BS01 rna ? GO:0000054 ... P39938 22096102
    292463 4v88:Ca (3.0) BS02 ZN ? GO:0000054 ... P39938 22096102
    292464 4v88:Cb (3.0) BS01 rna ? GO:0000028 ... P35997 22096102
    292465 4v88:Cc (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 22096102
    292466 4v88:Cd (3.0) BS01 rna ? GO:0002181 ... P41057 22096102
    292467 4v88:Cd (3.0) BS02 MG ? GO:0002181 ... P41057 22096102
    292468 4v88:Cd (3.0) BS03 ZN ? GO:0002181 ... P41057 22096102
    292469 4v88:Ce (3.0) BS01 rna ? GO:0002181 ... P0CX33 22096102
    292470 4v88:Cf (3.0) BS01 rna ? GO:0000028 ... P05759 22096102
    292471 4v88:Cg (3.0) BS01 rna ? GO:0001965 ... P38011 22096102
    292472 4v88:Cg (3.0) BS02 OHX ? GO:0001965 ... P38011 22096102
    292473 4v88:Ch (3.0) BS01 rna N/A N/A N/A 22096102
    292474 4v88:Ch (3.0) BS02 rna N/A N/A N/A 22096102
    292475 4v88:Ch (3.0) BS03 MG N/A N/A N/A 22096102
    292476 4v88:DA (3.0) BS01 rna ? GO:0002181 ... P0CX45 22096102
    292477 4v88:DA (3.0) BS02 rna ? GO:0002181 ... P0CX45 22096102
    292478 4v88:DA (3.0) BS03 OHX ? GO:0002181 ... P0CX45 22096102
    292479 4v88:DA (3.0) BS04 MG ? GO:0002181 ... P0CX45 22096102
    292480 4v88:DA (3.0) BS05 MG ? GO:0002181 ... P0CX45 22096102
    292481 4v88:DB (3.0) BS01 rna ? GO:0000027 ... P14126 22096102
    292482 4v88:DB (3.0) BS02 MG ? GO:0000027 ... P14126 22096102
    292483 4v88:DB (3.0) BS03 MG ? GO:0000027 ... P14126 22096102
    292484 4v88:DB (3.0) BS04 OHX ? GO:0000027 ... P14126 22096102
    292485 4v88:DB (3.0) BS05 MG ? GO:0000027 ... P14126 22096102
    292486 4v88:DB (3.0) BS06 MG ? GO:0000027 ... P14126 22096102
    292487 4v88:DB (3.0) BS07 MG ? GO:0000027 ... P14126 22096102
    292488 4v88:DB (3.0) BS08 MG ? GO:0000027 ... P14126 22096102
    292489 4v88:DB (3.0) BS09 MG ? GO:0000027 ... P14126 22096102
    292490 4v88:DB (3.0) BS10 MG ? GO:0000027 ... P14126 22096102
    292491 4v88:DB (3.0) BS11 MG ? GO:0000027 ... P14126 22096102
    292492 4v88:DC (3.0) BS01 rna ? GO:0002181 ... P10664 22096102
    292493 4v88:DC (3.0) BS02 rna ? GO:0002181 ... P10664 22096102
    292494 4v88:DC (3.0) BS03 OHX ? GO:0002181 ... P10664 22096102
    292495 4v88:DC (3.0) BS04 MG ? GO:0002181 ... P10664 22096102
    292496 4v88:DD (3.0) BS01 rna ? GO:0000027 ... P26321 22096102
    292497 4v88:DD (3.0) BS02 rna ? GO:0000027 ... P26321 22096102
    292498 4v88:DD (3.0) BS03 MG ? GO:0000027 ... P26321 22096102
    292499 4v88:DD (3.0) BS04 MG ? GO:0000027 ... P26321 22096102
    292500 4v88:DD (3.0) BS05 MG ? GO:0000027 ... P26321 22096102
    292501 4v88:DD (3.0) BS06 MG ? GO:0000027 ... P26321 22096102
    292502 4v88:DD (3.0) BS07 MG ? GO:0000027 ... P26321 22096102
    292503 4v88:DD (3.0) BS08 MG ? GO:0000027 ... P26321 22096102
    292504 4v88:DE (3.0) BS01 rna ? GO:0000027 ... Q02326 22096102
    292505 4v88:DF (3.0) BS01 rna ? GO:0000463 ... P05737 22096102
    292506 4v88:DF (3.0) BS02 rna ? GO:0000463 ... P05737 22096102
    292507 4v88:DF (3.0) BS03 MG ? GO:0000463 ... P05737 22096102
    292508 4v88:DF (3.0) BS04 MG ? GO:0000463 ... P05737 22096102
    292509 4v88:DG (3.0) BS01 rna ? GO:0000470 ... P17076 22096102
    292510 4v88:DG (3.0) BS02 rna ? GO:0000470 ... P17076 22096102
    292511 4v88:DG (3.0) BS03 OHX ? GO:0000470 ... P17076 22096102
    292512 4v88:DH (3.0) BS01 rna ? GO:0002181 ... P05738 22096102
    292513 4v88:DH (3.0) BS02 MG ? GO:0002181 ... P05738 22096102
    292514 4v88:DI (3.0) BS01 rna ? GO:0000027 ... P41805 22096102
    292515 4v88:DI (3.0) BS02 rna ? GO:0000027 ... P41805 22096102
    292516 4v88:DI (3.0) BS03 OHX ? GO:0000027 ... P41805 22096102
    292517 4v88:DI (3.0) BS04 OHX ? GO:0000027 ... P41805 22096102
    292518 4v88:DJ (3.0) BS01 rna ? GO:0000027 ... P0C0W9 22096102
    292519 4v88:DJ (3.0) BS02 rna ? GO:0000027 ... P0C0W9 22096102
    292520 4v88:DJ (3.0) BS03 OHX ? GO:0000027 ... P0C0W9 22096102
    292521 4v88:DK (3.0) BS01 rna N/A N/A N/A 22096102
    292522 4v88:DL (3.0) BS01 rna ? GO:0002181 ... Q12690 22096102
    292523 4v88:DL (3.0) BS02 rna ? GO:0002181 ... Q12690 22096102
    292524 4v88:DL (3.0) BS03 MG ? GO:0002181 ... Q12690 22096102
    292525 4v88:DM (3.0) BS01 rna ? GO:0000027 ... P36105 22096102
    292526 4v88:DM (3.0) BS02 MG ? GO:0000027 ... P36105 22096102
    292527 4v88:DN (3.0) BS01 rna ? GO:0002181 ... P05748 22096102
    292528 4v88:DN (3.0) BS02 rna ? GO:0002181 ... P05748 22096102
    292529 4v88:DN (3.0) BS03 MG ? GO:0002181 ... P05748 22096102
    292530 4v88:DO (3.0) BS01 rna ? GO:0000470 ... P26784 22096102
    292531 4v88:DO (3.0) BS02 MG ? GO:0000470 ... P26784 22096102
    292532 4v88:DO (3.0) BS03 MG ? GO:0000470 ... P26784 22096102
    292533 4v88:DO (3.0) BS04 MG ? GO:0000470 ... P26784 22096102
    292534 4v88:DO (3.0) BS05 MG ? GO:0000470 ... P26784 22096102
    292535 4v88:DO (3.0) BS06 MG ? GO:0000470 ... P26784 22096102
    292536 4v88:DP (3.0) BS01 rna ? GO:0000448 ... P05740 22096102
    292537 4v88:DP (3.0) BS02 rna ? GO:0000448 ... P05740 22096102
    292538 4v88:DP (3.0) BS03 MG ? GO:0000448 ... P05740 22096102
    292539 4v88:DP (3.0) BS04 MG ? GO:0000448 ... P05740 22096102
    292540 4v88:DP (3.0) BS05 MG ? GO:0000448 ... P05740 22096102
    292541 4v88:DP (3.0) BS06 OHX ? GO:0000448 ... P05740 22096102
    292542 4v88:DP (3.0) BS07 MG ? GO:0000448 ... P05740 22096102
    292543 4v88:DP (3.0) BS08 MG ? GO:0000448 ... P05740 22096102
    292544 4v88:DQ (3.0) BS01 rna ? GO:0002181 ... P0CX49 22096102
    292545 4v88:DQ (3.0) BS02 MG ? GO:0002181 ... P0CX49 22096102
    292546 4v88:DQ (3.0) BS03 MG ? GO:0002181 ... P0CX49 22096102
    292547 4v88:DR (3.0) BS01 rna ? GO:0002181 ... P0CX82 22096102
    292548 4v88:DR (3.0) BS02 rna ? GO:0002181 ... P0CX82 22096102
    292549 4v88:DR (3.0) BS03 MG ? GO:0002181 ... P0CX82 22096102
    292550 4v88:DR (3.0) BS04 MG ? GO:0002181 ... P0CX82 22096102
    292551 4v88:DS (3.0) BS01 rna ? GO:0002181 ... P0CX23 22096102
    292552 4v88:DS (3.0) BS02 rna ? GO:0002181 ... P0CX23 22096102
    292553 4v88:DS (3.0) BS03 MG ? GO:0002181 ... P0CX23 22096102
    292554 4v88:DS (3.0) BS04 MG ? GO:0002181 ... P0CX23 22096102
    292555 4v88:DS (3.0) BS05 MG ? GO:0002181 ... P0CX23 22096102
    292556 4v88:DT (3.0) BS01 rna ? GO:0002181 ... Q02753 22096102
    292557 4v88:DT (3.0) BS02 rna ? GO:0002181 ... Q02753 22096102
    292558 4v88:DT (3.0) BS03 OHX ? GO:0002181 ... Q02753 22096102
    292559 4v88:DT (3.0) BS04 MG ? GO:0002181 ... Q02753 22096102
    292560 4v88:DT (3.0) BS05 MG ? GO:0002181 ... Q02753 22096102
    292561 4v88:DU (3.0) BS01 rna ? GO:0002181 ... P05749 22096102
    292562 4v88:DV (3.0) BS01 rna ? GO:0002181 ... P0CX41 22096102
    292563 4v88:DV (3.0) BS02 rna ? GO:0002181 ... P0CX41 22096102
    292564 4v88:DV (3.0) BS03 MG ? GO:0002181 ... P0CX41 22096102
    292565 4v88:DW (3.0) BS01 rna ? GO:0002181 ... P04449 22096102
    292566 4v88:DW (3.0) BS02 rna ? GO:0002181 ... P04449 22096102
    292567 4v88:DW (3.0) BS03 MG ? GO:0002181 ... P04449 22096102
    292568 4v88:DX (3.0) BS01 rna ? GO:0000027 ... P04456 22096102
    292569 4v88:DX (3.0) BS02 rna ? GO:0000027 ... P04456 22096102
    292570 4v88:DY (3.0) BS01 rna ? GO:0002181 ... P05743 22096102
    292571 4v88:DY (3.0) BS02 rna ? GO:0002181 ... P05743 22096102
    292572 4v88:DY (3.0) BS03 OHX ? GO:0002181 ... P05743 22096102
    292573 4v88:DZ (3.0) BS01 rna ? GO:0002181 ... P0C2H6 22096102
    292574 4v88:Da (3.0) BS01 rna ? GO:0002181 ... P02406 22096102
    292575 4v88:Da (3.0) BS02 OHX ? GO:0002181 ... P02406 22096102
    292576 4v88:Da (3.0) BS03 MG ? GO:0002181 ... P02406 22096102
    292577 4v88:Da (3.0) BS04 MG ? GO:0002181 ... P02406 22096102
    292578 4v88:Db (3.0) BS01 rna ? GO:0002181 ... P05747 22096102
    292579 4v88:Db (3.0) BS02 OHX ? GO:0002181 ... P05747 22096102
    292580 4v88:Db (3.0) BS03 MG ? GO:0002181 ... P05747 22096102
    292581 4v88:Dc (3.0) BS01 rna ? GO:0002181 ... P14120 22096102
    292582 4v88:Dd (3.0) BS01 rna ? GO:0002181 ... P0C2H8 22096102
    292583 4v88:Dd (3.0) BS02 MG ? GO:0002181 ... P0C2H8 22096102
    292584 4v88:De (3.0) BS01 rna ? GO:0002181 ... P38061 22096102
    292585 4v88:De (3.0) BS02 MG ? GO:0002181 ... P38061 22096102
    292586 4v88:De (3.0) BS03 MG ? GO:0002181 ... P38061 22096102
    292587 4v88:De (3.0) BS04 MG ? GO:0002181 ... P38061 22096102
    292588 4v88:Df (3.0) BS01 rna ? GO:0000027 ... P05744 22096102
    292589 4v88:Df (3.0) BS02 MG ? GO:0000027 ... P05744 22096102
    292590 4v88:Df (3.0) BS03 OHX ? GO:0000027 ... P05744 22096102
    292591 4v88:Df (3.0) BS04 MG ? GO:0000027 ... P05744 22096102
    292592 4v88:Df (3.0) BS05 MG ? GO:0000027 ... P05744 22096102
    292593 4v88:Dg (3.0) BS01 rna ? GO:0002181 ... P87262 22096102
    292594 4v88:Dg (3.0) BS02 MG ? GO:0002181 ... P87262 22096102
    292595 4v88:Dg (3.0) BS03 MG ? GO:0002181 ... P87262 22096102
    292596 4v88:Dh (3.0) BS01 rna ? GO:0000463 ... P0CX84 22096102
    292597 4v88:Dh (3.0) BS02 rna ? GO:0000463 ... P0CX84 22096102
    292598 4v88:Di (3.0) BS01 rna ? GO:0002181 ... P05745 22096102
    292599 4v88:Di (3.0) BS02 MG ? GO:0002181 ... P05745 22096102
    292600 4v88:Dj (3.0) BS01 rna ? GO:0000448 ... P49166 22096102

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).