SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    292601 4v88:Dj (3.0) BS02 rna ? GO:0000448 ... P49166 22096102
    292602 4v88:Dj (3.0) BS03 OHX ? GO:0000448 ... P49166 22096102
    292603 4v88:Dj (3.0) BS04 OHX ? GO:0000448 ... P49166 22096102
    292604 4v88:Dj (3.0) BS05 MG ? GO:0000448 ... P49166 22096102
    292605 4v88:Dj (3.0) BS06 MG ? GO:0000448 ... P49166 22096102
    292606 4v88:Dj (3.0) BS07 OHX ? GO:0000448 ... P49166 22096102
    292607 4v88:Dj (3.0) BS08 ZN ? GO:0000448 ... P49166 22096102
    292608 4v88:Dk (3.0) BS01 rna ? GO:0002181 ... P49167 22096102
    292609 4v88:Dl (3.0) BS01 rna ? GO:0002181 ... P04650 22096102
    292610 4v88:Dl (3.0) BS02 rna ? GO:0002181 ... P04650 22096102
    292611 4v88:Dl (3.0) BS03 MG ? GO:0002181 ... P04650 22096102
    292612 4v88:Dm (3.0) BS01 rna ? GO:0000027 ... P0CH08 22096102
    292613 4v88:Dm (3.0) BS02 MG ? GO:0000027 ... P0CH08 22096102
    292614 4v88:Dm (3.0) BS03 ZN ? GO:0000027 ... P0CH08 22096102
    292615 4v88:Do (3.0) BS01 rna ? GO:0002181 ... P0CX27 22096102
    292616 4v88:Do (3.0) BS02 OHX ? GO:0002181 ... P0CX27 22096102
    292617 4v88:Do (3.0) BS03 ZN ? GO:0002181 ... P0CX27 22096102
    292618 4v88:Dp (3.0) BS01 rna ? GO:0002181 ... P0CX25 22096102
    292619 4v88:Dp (3.0) BS02 rna ? GO:0002181 ... P0CX25 22096102
    292620 4v88:Dp (3.0) BS03 MG ? GO:0002181 ... P0CX25 22096102
    292621 4v88:Dp (3.0) BS04 ZN ? GO:0002181 ... P0CX25 22096102
    292622 4v88:Dq (3.0) BS01 rna ? GO:0000027 ... P05317 22096102
    292623 4v88:Dq (3.0) BS02 MG ? GO:0000027 ... P05317 22096102
    292624 4v89:AB (3.7) BS01 rna ? GO:0000028 ... P0A7V0 22187675
    292625 4v89:AC (3.7) BS01 rna ? GO:0000028 ... P0A7V3 22187675
    292626 4v89:AD (3.7) BS01 rna ? GO:0000028 ... P0A7V8 22187675
    292627 4v89:AE (3.7) BS01 rna ? GO:0000028 ... P0A7W1 22187675
    292628 4v89:AF (3.7) BS01 rna ? GO:0002181 ... P02358 22187675
    292629 4v89:AG (3.7) BS01 rna ? GO:0000028 ... P02359 22187675
    292630 4v89:AH (3.7) BS01 rna ? GO:0000028 ... P0A7W7 22187675
    292631 4v89:AI (3.7) BS01 rna ? GO:0000049 ... P0A7X3 22187675
    292632 4v89:AJ (3.7) BS01 rna ? GO:0000049 ... P0A7R5 22187675
    292633 4v89:AK (3.7) BS01 rna ? GO:0002181 ... P0A7R9 22187675
    292634 4v89:AL (3.7) BS01 rna ? GO:0000049 ... P0A7S3 22187675
    292635 4v89:AM (3.7) BS01 rna ? GO:0000049 ... P0A7S9 22187675
    292636 4v89:AN (3.7) BS01 rna ? GO:0000028 ... P0AG59 22187675
    292637 4v89:AO (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 22187675
    292638 4v89:AO (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 22187675
    292639 4v89:AP (3.7) BS01 rna ? GO:0000028 ... P0A7T3 22187675
    292640 4v89:AQ (3.7) BS01 rna ? GO:0000028 ... P0AG63 22187675
    292641 4v89:AR (3.7) BS01 rna ? GO:0002181 ... P0A7T7 22187675
    292642 4v89:AS (3.7) BS01 rna ? GO:0000028 ... P0A7U3 22187675
    292643 4v89:AT (3.7) BS01 rna ? GO:0000028 ... P0A7U7 22187675
    292644 4v89:AU (3.7) BS01 rna ? GO:0000028 ... P68679 22187675
    292645 4v89:AW (3.7) BS01 rna ? GO:0003924 ... P0A7I4 22187675
    292646 4v89:AW (3.7) BS02 rna ? GO:0003924 ... P0A7I4 22187675
    292647 4v89:AW (3.7) BS03 GNP ? GO:0003924 ... P0A7I4 22187675
    292648 4v89:AW (3.7) BS04 MG ? GO:0003924 ... P0A7I4 22187675
    292649 4v89:B0 (3.7) BS01 rna ? GO:0000027 ... P0A7L8 22187675
    292650 4v89:B1 (3.7) BS01 rna ? GO:0000027 ... P0A7M2 22187675
    292651 4v89:B2 (3.7) BS01 rna ? GO:0000027 ... P0A7M6 22187675
    292652 4v89:B3 (3.7) BS01 rna ? GO:0000027 ... P0AG51 22187675
    292653 4v89:B3 (3.7) BS02 rna ? GO:0000027 ... P0AG51 22187675
    292654 4v89:B4 (3.7) BS01 rna ? GO:0000027 ... P0A7N4 22187675
    292655 4v89:B5 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 22187675
    292656 4v89:B6 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 22187675
    292657 4v89:B7 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 22187675
    292658 4v89:B8 (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 22187675
    292659 4v89:BC (3.7) BS01 rna ? GO:0000027 ... P60422 22187675
    292660 4v89:BC (3.7) BS02 rna ? GO:0000027 ... P60422 22187675
    292661 4v89:BD (3.7) BS01 rna ? GO:0000027 ... P60438 22187675
    292662 4v89:BE (3.7) BS01 rna ? GO:0001070 ... P60723 22187675
    292663 4v89:BF (3.7) BS01 rna ? GO:0000027 ... P62399 22187675
    292664 4v89:BF (3.7) BS02 rna ? GO:0000027 ... P62399 22187675
    292665 4v89:BG (3.7) BS01 rna ? GO:0000027 ... P0AG55 22187675
    292666 4v89:BH (3.7) BS01 rna ? GO:0002181 ... P0A7J3 22187675
    292667 4v89:BI (3.7) BS01 rna ? GO:0000027 ... P0A7J7 22187675
    292668 4v89:BN (3.7) BS01 rna ? GO:0002181 ... P0AA10 22187675
    292669 4v89:BO (3.7) BS01 rna ? GO:0002181 ... P0ADY3 22187675
    292670 4v89:BO (3.7) BS02 rna ? GO:0002181 ... P0ADY3 22187675
    292671 4v89:BP (3.7) BS01 rna ? GO:0002181 ... P02413 22187675
    292672 4v89:BQ (3.7) BS01 rna ? GO:0000027 ... P0ADY7 22187675
    292673 4v89:BQ (3.7) BS02 rna ? GO:0000027 ... P0ADY7 22187675
    292674 4v89:BR (3.7) BS01 rna ? GO:0000027 ... P0AG44 22187675
    292675 4v89:BS (3.7) BS01 rna ? GO:0002181 ... P0C018 22187675
    292676 4v89:BS (3.7) BS02 rna ? GO:0002181 ... P0C018 22187675
    292677 4v89:BT (3.7) BS01 rna ? GO:0000027 ... P0A7K6 22187675
    292678 4v89:BT (3.7) BS02 rna ? GO:0000027 ... P0A7K6 22187675
    292679 4v89:BU (3.7) BS01 rna ? GO:0000027 ... P0A7L3 22187675
    292680 4v89:BV (3.7) BS01 rna ? GO:0002181 ... P0AG48 22187675
    292681 4v89:BW (3.7) BS01 rna ? GO:0002181 ... P61175 22187675
    292682 4v89:BX (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 22187675
    292683 4v89:BY (3.7) BS01 rna ? GO:0000027 ... P60624 22187675
    292684 4v89:BZ (3.7) BS01 rna ? GO:0000027 ... P68919 22187675
    292685 4v89:BZ (3.7) BS02 rna ? GO:0000027 ... P68919 22187675
    292686 4v8a:A0 (3.2) BS01 rna ? GO:0003735 ... P60493 22240456
    292687 4v8a:A0 (3.2) BS02 rna ? GO:0003735 ... P60493 22240456
    292688 4v8a:A1 (3.2) BS01 rna ? GO:0005840 ... P60494 22240456
    292689 4v8a:A2 (3.2) BS01 rna ? GO:0005840 ... Q5SHP6 22240456
    292690 4v8a:A3 (3.2) BS01 rna ? GO:0005840 ... Q5SHQ6 22240456
    292691 4v8a:A3 (3.2) BS02 rna ? GO:0005840 ... Q5SHQ6 22240456
    292692 4v8a:A4 (3.2) BS01 rna ? GO:0005840 ... Q5SJE1 22240456
    292693 4v8a:A5 (3.2) BS01 rna ? GO:0005840 ... P80339 22240456
    292694 4v8a:A6 (3.2) BS01 rna ? GO:0000049 ... P35871 22240456
    292695 4v8a:A7 (3.2) BS01 rna ? GO:0005840 ... P80340 22240456
    292696 4v8a:A8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 22240456
    292697 4v8a:AD (3.2) BS01 rna ? GO:0002181 ... P60405 22240456
    292698 4v8a:AD (3.2) BS02 rna ? GO:0002181 ... P60405 22240456
    292699 4v8a:AE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 22240456
    292700 4v8a:AF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 22240456
    292701 4v8a:AG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 22240456
    292702 4v8a:AG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 22240456
    292703 4v8a:AH (3.2) BS01 rna N/A N/A N/A 22240456
    292704 4v8a:AI (3.2) BS01 rna ? GO:0005840 ... Q5SLQ1 22240456
    292705 4v8a:AN (3.2) BS01 rna ? GO:0003729 ... P60488 22240456
    292706 4v8a:AO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 22240456
    292707 4v8a:AO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 22240456
    292708 4v8a:AP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 22240456
    292709 4v8a:AQ (3.2) BS01 rna ? GO:0000049 ... P60489 22240456
    292710 4v8a:AQ (3.2) BS02 rna ? GO:0000049 ... P60489 22240456
    292711 4v8a:AR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 22240456
    292712 4v8a:AS (3.2) BS01 rna ? GO:0005737 ... Q5SHQ4 22240456
    292713 4v8a:AS (3.2) BS02 rna ? GO:0005737 ... Q5SHQ4 22240456
    292714 4v8a:AT (3.2) BS01 rna ? GO:0003735 ... P60490 22240456
    292715 4v8a:AT (3.2) BS02 rna ? GO:0003735 ... P60490 22240456
    292716 4v8a:AU (3.2) BS01 rna ? GO:0000027 ... P60491 22240456
    292717 4v8a:AV (3.2) BS01 rna ? GO:0003735 ... P60492 22240456
    292718 4v8a:AW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 22240456
    292719 4v8a:AX (3.2) BS01 rna ? GO:0005840 ... Q5SHP0 22240456
    292720 4v8a:AY (3.2) BS01 rna ? GO:0005840 ... Q5SHP9 22240456
    292721 4v8a:AZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 22240456
    292722 4v8a:AZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 22240456
    292723 4v8a:B0 (3.2) BS01 rna ? GO:0003735 ... P60493 22240456
    292724 4v8a:B0 (3.2) BS02 rna ? GO:0003735 ... P60493 22240456
    292725 4v8a:B1 (3.2) BS01 rna ? GO:0005840 ... P60494 22240456
    292726 4v8a:B2 (3.2) BS01 rna ? GO:0005840 ... Q5SHP6 22240456
    292727 4v8a:B3 (3.2) BS01 rna ? GO:0005840 ... Q5SHQ6 22240456
    292728 4v8a:B3 (3.2) BS02 rna ? GO:0005840 ... Q5SHQ6 22240456
    292729 4v8a:B4 (3.2) BS01 rna ? GO:0005840 ... Q5SJE1 22240456
    292730 4v8a:B5 (3.2) BS01 rna ? GO:0005840 ... P80339 22240456
    292731 4v8a:B6 (3.2) BS01 rna ? GO:0000049 ... P35871 22240456
    292732 4v8a:B7 (3.2) BS01 rna ? GO:0005840 ... P80340 22240456
    292733 4v8a:B8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 22240456
    292734 4v8a:BD (3.2) BS01 rna ? GO:0002181 ... P60405 22240456
    292735 4v8a:BD (3.2) BS02 rna ? GO:0002181 ... P60405 22240456
    292736 4v8a:BE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 22240456
    292737 4v8a:BF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 22240456
    292738 4v8a:BG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 22240456
    292739 4v8a:BG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 22240456
    292740 4v8a:BH (3.2) BS01 rna N/A N/A N/A 22240456
    292741 4v8a:BI (3.2) BS01 rna ? GO:0005840 ... Q5SLQ1 22240456
    292742 4v8a:BN (3.2) BS01 rna ? GO:0003729 ... P60488 22240456
    292743 4v8a:BO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 22240456
    292744 4v8a:BO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 22240456
    292745 4v8a:BP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 22240456
    292746 4v8a:BQ (3.2) BS01 rna ? GO:0000049 ... P60489 22240456
    292747 4v8a:BQ (3.2) BS02 rna ? GO:0000049 ... P60489 22240456
    292748 4v8a:BR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 22240456
    292749 4v8a:BS (3.2) BS01 rna ? GO:0005737 ... Q5SHQ4 22240456
    292750 4v8a:BS (3.2) BS02 rna ? GO:0005737 ... Q5SHQ4 22240456
    292751 4v8a:BT (3.2) BS01 rna ? GO:0003735 ... P60490 22240456
    292752 4v8a:BT (3.2) BS02 rna ? GO:0003735 ... P60490 22240456
    292753 4v8a:BU (3.2) BS01 rna ? GO:0000027 ... P60491 22240456
    292754 4v8a:BV (3.2) BS01 rna ? GO:0003735 ... P60492 22240456
    292755 4v8a:BW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 22240456
    292756 4v8a:BX (3.2) BS01 rna ? GO:0005840 ... Q5SHP0 22240456
    292757 4v8a:BY (3.2) BS01 rna ? GO:0005840 ... Q5SHP9 22240456
    292758 4v8a:BZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 22240456
    292759 4v8a:BZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 22240456
    292760 4v8a:CB (3.2) BS01 rna ? GO:0003735 ... P80371 22240456
    292761 4v8a:CC (3.2) BS01 rna ? GO:0003729 ... P80372 22240456
    292762 4v8a:CD (3.2) BS01 rna ? GO:0003735 ... P80373 22240456
    292763 4v8a:CE (3.2) BS01 rna ? GO:0005840 ... Q5SHQ5 22240456
    292764 4v8a:CF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 22240456
    292765 4v8a:CG (3.2) BS01 rna ? GO:0000049 ... P17291 22240456
    292766 4v8a:CH (3.2) BS01 rna N/A N/A N/A 22240456
    292767 4v8a:CI (3.2) BS01 rna ? GO:0000049 ... P80374 22240456
    292768 4v8a:CJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 22240456
    292769 4v8a:CK (3.2) BS01 rna ? GO:0005840 ... P80376 22240456
    292770 4v8a:CL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 22240456
    292771 4v8a:CM (3.2) BS01 rna ? GO:0000049 ... P80377 22240456
    292772 4v8a:CN (3.2) BS01 rna N/A N/A N/A 22240456
    292773 4v8a:CO (3.2) BS01 rna ? GO:0005737 ... Q5SJ76 22240456
    292774 4v8a:CO (3.2) BS02 rna ? GO:0005737 ... Q5SJ76 22240456
    292775 4v8a:CP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 22240456
    292776 4v8a:CQ (3.2) BS01 rna N/A N/A N/A 22240456
    292777 4v8a:CR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 22240456
    292778 4v8a:CS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 22240456
    292779 4v8a:CT (3.2) BS01 rna ? GO:0005840 ... P80380 22240456
    292780 4v8a:DB (3.2) BS01 rna ? GO:0003735 ... P80371 22240456
    292781 4v8a:DC (3.2) BS01 rna ? GO:0003729 ... P80372 22240456
    292782 4v8a:DD (3.2) BS01 rna ? GO:0003735 ... P80373 22240456
    292783 4v8a:DE (3.2) BS01 rna ? GO:0005840 ... Q5SHQ5 22240456
    292784 4v8a:DF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 22240456
    292785 4v8a:DG (3.2) BS01 rna ? GO:0000049 ... P17291 22240456
    292786 4v8a:DH (3.2) BS01 rna N/A N/A N/A 22240456
    292787 4v8a:DI (3.2) BS01 rna ? GO:0000049 ... P80374 22240456
    292788 4v8a:DJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 22240456
    292789 4v8a:DK (3.2) BS01 rna ? GO:0005840 ... P80376 22240456
    292790 4v8a:DL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 22240456
    292791 4v8a:DM (3.2) BS01 rna ? GO:0000049 ... P80377 22240456
    292792 4v8a:DN (3.2) BS01 rna N/A N/A N/A 22240456
    292793 4v8a:DO (3.2) BS01 rna ? GO:0005737 ... Q5SJ76 22240456
    292794 4v8a:DO (3.2) BS02 rna ? GO:0005737 ... Q5SJ76 22240456
    292795 4v8a:DP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 22240456
    292796 4v8a:DQ (3.2) BS01 rna N/A N/A N/A 22240456
    292797 4v8a:DR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 22240456
    292798 4v8a:DS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 22240456
    292799 4v8a:DT (3.2) BS01 rna ? GO:0005840 ... P80380 22240456
    292800 4v8b:AE (3.0) BS01 rna ? GO:0003735 ... P80371 22437501

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).