SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    293001 4v8c:BU (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    293002 4v8c:BV (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    293003 4v8c:BV (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 22437501
    293004 4v8c:BW (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    293005 4v8c:BX (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    293006 4v8c:BX (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    293007 4v8c:BZ (3.3) BS01 rna ? GO:0003735 ... P60494 22437501
    293008 4v8c:CE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    293009 4v8c:CF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    293010 4v8c:CG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    293011 4v8c:CG (3.3) BS02 ZN ? GO:0003723 ... P80373 22437501
    293012 4v8c:CH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    293013 4v8c:CI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    293014 4v8c:CJ (3.3) BS01 rna ? GO:0000049 ... P17291 22437501
    293015 4v8c:CJ (3.3) BS02 rna ? GO:0000049 ... P17291 22437501
    293016 4v8c:CK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    293017 4v8c:CL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    293018 4v8c:CL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    293019 4v8c:CM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    293020 4v8c:CN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    293021 4v8c:CN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    293022 4v8c:CO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    293023 4v8c:CO (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    293024 4v8c:CP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    293025 4v8c:CQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    293026 4v8c:CQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    293027 4v8c:CR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    293028 4v8c:CR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    293029 4v8c:CS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    293030 4v8c:CT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    293031 4v8c:CU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    293032 4v8c:CV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    293033 4v8c:CW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    293034 4v8c:DE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    293035 4v8c:DF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    293036 4v8c:DG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    293037 4v8c:DG (3.3) BS02 MG ? GO:0003723 ... P80373 22437501
    293038 4v8c:DG (3.3) BS03 ZN ? GO:0003723 ... P80373 22437501
    293039 4v8c:DH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    293040 4v8c:DI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    293041 4v8c:DJ (3.3) BS01 rna ? GO:0000049 ... P17291 22437501
    293042 4v8c:DJ (3.3) BS02 rna ? GO:0000049 ... P17291 22437501
    293043 4v8c:DK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    293044 4v8c:DL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    293045 4v8c:DL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    293046 4v8c:DM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    293047 4v8c:DN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    293048 4v8c:DN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    293049 4v8c:DO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    293050 4v8c:DO (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    293051 4v8c:DP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    293052 4v8c:DP (3.3) BS02 rna ? GO:0000049 ... P80377 22437501
    293053 4v8c:DQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    293054 4v8c:DQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    293055 4v8c:DR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    293056 4v8c:DR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    293057 4v8c:DS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    293058 4v8c:DT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    293059 4v8c:DU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    293060 4v8c:DV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    293061 4v8c:DW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    293062 4v8d:AE (3.0) BS01 rna ? GO:0003735 ... P80371 22437501
    293063 4v8d:AF (3.0) BS01 rna ? GO:0003676 ... P80372 22437501
    293064 4v8d:AG (3.0) BS01 rna ? GO:0003723 ... P80373 22437501
    293065 4v8d:AG (3.0) BS02 MG ? GO:0003723 ... P80373 22437501
    293066 4v8d:AG (3.0) BS03 ZN ? GO:0003723 ... P80373 22437501
    293067 4v8d:AH (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    293068 4v8d:AH (3.0) BS02 rna ? GO:0003723 ... Q5SHQ5 22437501
    293069 4v8d:AI (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    293070 4v8d:AJ (3.0) BS01 rna ? GO:0000049 ... P17291 22437501
    293071 4v8d:AJ (3.0) BS02 rna ? GO:0000049 ... P17291 22437501
    293072 4v8d:AK (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    293073 4v8d:AL (3.0) BS01 rna ? GO:0000049 ... P80374 22437501
    293074 4v8d:AL (3.0) BS02 rna ? GO:0000049 ... P80374 22437501
    293075 4v8d:AM (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    293076 4v8d:AN (3.0) BS01 rna ? GO:0003735 ... P80376 22437501
    293077 4v8d:AN (3.0) BS02 MG ? GO:0003735 ... P80376 22437501
    293078 4v8d:AO (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    293079 4v8d:AO (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    293080 4v8d:AP (3.0) BS01 rna ? GO:0000049 ... P80377 22437501
    293081 4v8d:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    293082 4v8d:AQ (3.0) BS02 ZN N/A GO:0003735 ... N/A 22437501
    293083 4v8d:AR (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    293084 4v8d:AR (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    293085 4v8d:AS (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    293086 4v8d:AT (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    293087 4v8d:AU (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    293088 4v8d:AV (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    293089 4v8d:AW (3.0) BS01 rna ? GO:0003723 ... P80380 22437501
    293090 4v8d:B0 (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    293091 4v8d:B1 (3.0) BS01 rna ? GO:0000027 ... P60491 22437501
    293092 4v8d:B2 (3.0) BS01 rna ? GO:0003723 ... P60492 22437501
    293093 4v8d:B3 (3.0) BS01 rna ? GO:0003735 ... P60493 22437501
    293094 4v8d:B3 (3.0) BS02 rna ? GO:0003735 ... P60493 22437501
    293095 4v8d:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    293096 4v8d:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 22437501
    293097 4v8d:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 22437501
    293098 4v8d:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 22437501
    293099 4v8d:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    293100 4v8d:BD (3.0) BS01 rna ? GO:0002181 ... P60405 22437501
    293101 4v8d:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    293102 4v8d:BE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    293103 4v8d:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    293104 4v8d:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    293105 4v8d:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    293106 4v8d:BG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    293107 4v8d:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    293108 4v8d:BK (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    293109 4v8d:BM (3.0) BS01 rna ? GO:0003729 ... P60488 22437501
    293110 4v8d:BN (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    293111 4v8d:BN (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    293112 4v8d:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    293113 4v8d:BO (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 22437501
    293114 4v8d:BP (3.0) BS01 rna ? GO:0000049 ... P60489 22437501
    293115 4v8d:BP (3.0) BS02 rna ? GO:0000049 ... P60489 22437501
    293116 4v8d:BP (3.0) BS03 rna ? GO:0000049 ... P60489 22437501
    293117 4v8d:BQ (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    293118 4v8d:BQ (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    293119 4v8d:BR (3.0) BS01 rna ? GO:0003735 ... P60490 22437501
    293120 4v8d:BR (3.0) BS02 rna ? GO:0003735 ... P60490 22437501
    293121 4v8d:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    293122 4v8d:BT (3.0) BS01 rna ? GO:0003735 ... Q5SHP0 22437501
    293123 4v8d:BU (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    293124 4v8d:BV (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    293125 4v8d:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    293126 4v8d:BX (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    293127 4v8d:BX (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    293128 4v8d:BZ (3.0) BS01 rna ? GO:0003735 ... P60494 22437501
    293129 4v8d:CE (3.0) BS01 rna ? GO:0003735 ... P80371 22437501
    293130 4v8d:CF (3.0) BS01 rna ? GO:0003676 ... P80372 22437501
    293131 4v8d:CG (3.0) BS01 rna ? GO:0003723 ... P80373 22437501
    293132 4v8d:CG (3.0) BS02 MG ? GO:0003723 ... P80373 22437501
    293133 4v8d:CG (3.0) BS03 ZN ? GO:0003723 ... P80373 22437501
    293134 4v8d:CH (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    293135 4v8d:CH (3.0) BS02 rna ? GO:0003723 ... Q5SHQ5 22437501
    293136 4v8d:CI (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    293137 4v8d:CJ (3.0) BS01 rna ? GO:0000049 ... P17291 22437501
    293138 4v8d:CJ (3.0) BS02 rna ? GO:0000049 ... P17291 22437501
    293139 4v8d:CK (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    293140 4v8d:CL (3.0) BS01 rna ? GO:0000049 ... P80374 22437501
    293141 4v8d:CL (3.0) BS02 rna ? GO:0000049 ... P80374 22437501
    293142 4v8d:CM (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    293143 4v8d:CN (3.0) BS01 rna ? GO:0003735 ... P80376 22437501
    293144 4v8d:CN (3.0) BS02 MG ? GO:0003735 ... P80376 22437501
    293145 4v8d:CO (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    293146 4v8d:CO (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    293147 4v8d:CP (3.0) BS01 rna ? GO:0000049 ... P80377 22437501
    293148 4v8d:CP (3.0) BS02 rna ? GO:0000049 ... P80377 22437501
    293149 4v8d:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    293150 4v8d:CR (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    293151 4v8d:CR (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    293152 4v8d:CS (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    293153 4v8d:CT (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    293154 4v8d:CU (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    293155 4v8d:CV (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    293156 4v8d:CW (3.0) BS01 rna ? GO:0003723 ... P80380 22437501
    293157 4v8d:D0 (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    293158 4v8d:D1 (3.0) BS01 rna ? GO:0000027 ... P60491 22437501
    293159 4v8d:D2 (3.0) BS01 rna ? GO:0003723 ... P60492 22437501
    293160 4v8d:D3 (3.0) BS01 rna ? GO:0003735 ... P60493 22437501
    293161 4v8d:D3 (3.0) BS02 rna ? GO:0003735 ... P60493 22437501
    293162 4v8d:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    293163 4v8d:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 22437501
    293164 4v8d:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 22437501
    293165 4v8d:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 22437501
    293166 4v8d:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    293167 4v8d:DD (3.0) BS01 rna ? GO:0002181 ... P60405 22437501
    293168 4v8d:DD (3.0) BS02 MG ? GO:0002181 ... P60405 22437501
    293169 4v8d:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    293170 4v8d:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    293171 4v8d:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    293172 4v8d:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    293173 4v8d:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    293174 4v8d:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    293175 4v8d:DK (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    293176 4v8d:DK (3.0) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    293177 4v8d:DM (3.0) BS01 rna ? GO:0003729 ... P60488 22437501
    293178 4v8d:DN (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    293179 4v8d:DN (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    293180 4v8d:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    293181 4v8d:DP (3.0) BS01 rna ? GO:0000049 ... P60489 22437501
    293182 4v8d:DP (3.0) BS02 rna ? GO:0000049 ... P60489 22437501
    293183 4v8d:DP (3.0) BS03 rna ? GO:0000049 ... P60489 22437501
    293184 4v8d:DQ (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    293185 4v8d:DQ (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    293186 4v8d:DR (3.0) BS01 rna ? GO:0003735 ... P60490 22437501
    293187 4v8d:DR (3.0) BS02 rna ? GO:0003735 ... P60490 22437501
    293188 4v8d:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    293189 4v8d:DT (3.0) BS01 rna ? GO:0003735 ... Q5SHP0 22437501
    293190 4v8d:DU (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    293191 4v8d:DV (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    293192 4v8d:DV (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 22437501
    293193 4v8d:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    293194 4v8d:DX (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    293195 4v8d:DX (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    293196 4v8d:DZ (3.0) BS01 rna ? GO:0003735 ... P60494 22437501
    293197 4v8e:A0 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    293198 4v8e:A1 (3.3) BS01 rna ? GO:0000027 ... P60491 22437501
    293199 4v8e:A2 (3.3) BS01 rna ? GO:0003723 ... P60492 22437501
    293200 4v8e:A3 (3.3) BS01 rna ? GO:0003735 ... P60493 22437501

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).