SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    293601 4v8g:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    293602 4v8g:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    293603 4v8g:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    293604 4v8g:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    293605 4v8g:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    293606 4v8g:DN (3.0) BS01 rna ? GO:0003729 ... P60488 22605777
    293607 4v8g:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    293608 4v8g:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    293609 4v8g:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    293610 4v8g:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 22605777
    293611 4v8g:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 22605777
    293612 4v8g:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    293613 4v8g:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    293614 4v8g:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    293615 4v8g:DT (3.0) BS01 rna ? GO:0003735 ... P60490 22605777
    293616 4v8g:DT (3.0) BS02 rna ? GO:0003735 ... P60490 22605777
    293617 4v8g:DU (3.0) BS01 rna ? GO:0000027 ... P60491 22605777
    293618 4v8g:DV (3.0) BS01 rna ? GO:0003723 ... P60492 22605777
    293619 4v8g:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    293620 4v8g:DX (3.0) BS01 rna ? GO:0003735 ... Q5SHP0 22605777
    293621 4v8g:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22605777
    293622 4v8g:DY (3.0) BS02 ZN ? GO:0003723 ... Q5SHP9 22605777
    293623 4v8g:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    293624 4v8g:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    293625 4v8h:AB (3.1) BS01 rna ? GO:0003735 ... P80371 22605777
    293626 4v8h:AC (3.1) BS01 rna ? GO:0003676 ... P80372 22605777
    293627 4v8h:AD (3.1) BS01 rna ? GO:0003723 ... P80373 22605777
    293628 4v8h:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 22605777
    293629 4v8h:AD (3.1) BS03 MG ? GO:0003723 ... P80373 22605777
    293630 4v8h:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    293631 4v8h:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    293632 4v8h:AG (3.1) BS01 rna ? GO:0000049 ... P17291 22605777
    293633 4v8h:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    293634 4v8h:AI (3.1) BS01 rna ? GO:0000049 ... P80374 22605777
    293635 4v8h:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    293636 4v8h:AK (3.1) BS01 rna ? GO:0003735 ... P80376 22605777
    293637 4v8h:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    293638 4v8h:AM (3.1) BS01 rna ? GO:0000049 ... P80377 22605777
    293639 4v8h:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    293640 4v8h:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 22605777
    293641 4v8h:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    293642 4v8h:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    293643 4v8h:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    293644 4v8h:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    293645 4v8h:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    293646 4v8h:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    293647 4v8h:AT (3.1) BS01 rna ? GO:0003723 ... P80380 22605777
    293648 4v8h:AX (3.1) BS01 rna ? GO:0005515 ... P0AFX0 22605777
    293649 4v8h:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 22605777
    293650 4v8h:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 22605777
    293651 4v8h:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 22605777
    293652 4v8h:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    293653 4v8h:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    293654 4v8h:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    293655 4v8h:B3 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 22605777
    293656 4v8h:B4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    293657 4v8h:B4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    293658 4v8h:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 22605777
    293659 4v8h:B5 (3.1) BS02 ZN ? GO:0003735 ... P80339 22605777
    293660 4v8h:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 22605777
    293661 4v8h:B6 (3.1) BS02 ZN ? GO:0000049 ... P35871 22605777
    293662 4v8h:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 22605777
    293663 4v8h:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    293664 4v8h:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 22605777
    293665 4v8h:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 22605777
    293666 4v8h:B9 (3.1) BS03 MG ? GO:0003735 ... Q5SHR2 22605777
    293667 4v8h:BD (3.1) BS01 rna ? GO:0002181 ... P60405 22605777
    293668 4v8h:BD (3.1) BS02 rna ? GO:0002181 ... P60405 22605777
    293669 4v8h:BD (3.1) BS03 MG ? GO:0002181 ... P60405 22605777
    293670 4v8h:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    293671 4v8h:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    293672 4v8h:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    293673 4v8h:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    293674 4v8h:BG (3.1) BS03 MG ? GO:0000049 ... Q5SHQ0 22605777
    293675 4v8h:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    293676 4v8h:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    293677 4v8h:BN (3.1) BS01 rna ? GO:0003729 ... P60488 22605777
    293678 4v8h:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    293679 4v8h:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    293680 4v8h:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    293681 4v8h:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 22605777
    293682 4v8h:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 22605777
    293683 4v8h:BQ (3.1) BS03 MG ? GO:0000049 ... P60489 22605777
    293684 4v8h:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    293685 4v8h:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    293686 4v8h:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    293687 4v8h:BT (3.1) BS01 rna ? GO:0003735 ... P60490 22605777
    293688 4v8h:BT (3.1) BS02 rna ? GO:0003735 ... P60490 22605777
    293689 4v8h:BU (3.1) BS01 rna ? GO:0000027 ... P60491 22605777
    293690 4v8h:BV (3.1) BS01 rna ? GO:0003723 ... P60492 22605777
    293691 4v8h:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    293692 4v8h:BX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 22605777
    293693 4v8h:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22605777
    293694 4v8h:BY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 22605777
    293695 4v8h:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    293696 4v8h:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    293697 4v8h:CB (3.1) BS01 rna ? GO:0003735 ... P80371 22605777
    293698 4v8h:CC (3.1) BS01 rna ? GO:0003676 ... P80372 22605777
    293699 4v8h:CD (3.1) BS01 rna ? GO:0003723 ... P80373 22605777
    293700 4v8h:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 22605777
    293701 4v8h:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    293702 4v8h:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    293703 4v8h:CG (3.1) BS01 rna ? GO:0000049 ... P17291 22605777
    293704 4v8h:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    293705 4v8h:CI (3.1) BS01 rna ? GO:0000049 ... P80374 22605777
    293706 4v8h:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    293707 4v8h:CK (3.1) BS01 rna ? GO:0003735 ... P80376 22605777
    293708 4v8h:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    293709 4v8h:CM (3.1) BS01 rna ? GO:0000049 ... P80377 22605777
    293710 4v8h:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    293711 4v8h:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 22605777
    293712 4v8h:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    293713 4v8h:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    293714 4v8h:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    293715 4v8h:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    293716 4v8h:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    293717 4v8h:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    293718 4v8h:CT (3.1) BS01 rna ? GO:0003723 ... P80380 22605777
    293719 4v8h:CX (3.1) BS01 rna ? GO:0005515 ... P0AFX0 22605777
    293720 4v8h:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 22605777
    293721 4v8h:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 22605777
    293722 4v8h:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 22605777
    293723 4v8h:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    293724 4v8h:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    293725 4v8h:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    293726 4v8h:D4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    293727 4v8h:D4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    293728 4v8h:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 22605777
    293729 4v8h:D5 (3.1) BS02 ZN ? GO:0003735 ... P80339 22605777
    293730 4v8h:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 22605777
    293731 4v8h:D6 (3.1) BS02 ZN ? GO:0000049 ... P35871 22605777
    293732 4v8h:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 22605777
    293733 4v8h:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    293734 4v8h:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 22605777
    293735 4v8h:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 22605777
    293736 4v8h:DD (3.1) BS01 rna ? GO:0002181 ... P60405 22605777
    293737 4v8h:DD (3.1) BS02 rna ? GO:0002181 ... P60405 22605777
    293738 4v8h:DD (3.1) BS03 MG ? GO:0002181 ... P60405 22605777
    293739 4v8h:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    293740 4v8h:DE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 22605777
    293741 4v8h:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    293742 4v8h:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    293743 4v8h:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    293744 4v8h:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    293745 4v8h:DI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    293746 4v8h:DN (3.1) BS01 rna ? GO:0003729 ... P60488 22605777
    293747 4v8h:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    293748 4v8h:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    293749 4v8h:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    293750 4v8h:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 22605777
    293751 4v8h:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 22605777
    293752 4v8h:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    293753 4v8h:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    293754 4v8h:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    293755 4v8h:DT (3.1) BS01 rna ? GO:0003735 ... P60490 22605777
    293756 4v8h:DT (3.1) BS02 rna ? GO:0003735 ... P60490 22605777
    293757 4v8h:DU (3.1) BS01 rna ? GO:0000027 ... P60491 22605777
    293758 4v8h:DV (3.1) BS01 rna ? GO:0003723 ... P60492 22605777
    293759 4v8h:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    293760 4v8h:DX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 22605777
    293761 4v8h:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22605777
    293762 4v8h:DY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 22605777
    293763 4v8h:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    293764 4v8h:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    293765 4v8i:AB (2.7) BS01 rna ? GO:0003735 ... P80371 22605777
    293766 4v8i:AC (2.7) BS01 rna ? GO:0003676 ... P80372 22605777
    293767 4v8i:AD (2.7) BS01 rna ? GO:0003723 ... P80373 22605777
    293768 4v8i:AE (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    293769 4v8i:AF (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    293770 4v8i:AG (2.7) BS01 rna ? GO:0000049 ... P17291 22605777
    293771 4v8i:AH (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    293772 4v8i:AI (2.7) BS01 rna ? GO:0000049 ... P80374 22605777
    293773 4v8i:AJ (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    293774 4v8i:AK (2.7) BS01 rna ? GO:0003735 ... P80376 22605777
    293775 4v8i:AK (2.7) BS02 MG ? GO:0003735 ... P80376 22605777
    293776 4v8i:AL (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    293777 4v8i:AM (2.7) BS01 rna ? GO:0000049 ... P80377 22605777
    293778 4v8i:AN (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    293779 4v8i:AN (2.7) BS02 ZN N/A GO:0003735 ... N/A 22605777
    293780 4v8i:AO (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    293781 4v8i:AO (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    293782 4v8i:AP (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    293783 4v8i:AQ (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    293784 4v8i:AR (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    293785 4v8i:AS (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    293786 4v8i:AT (2.7) BS01 rna ? GO:0003723 ... P80380 22605777
    293787 4v8i:AY (2.7) BS01 rna ? GO:0005515 ... P0AD49 22605777
    293788 4v8i:B0 (2.7) BS01 rna ? GO:0003735 ... P60493 22605777
    293789 4v8i:B0 (2.7) BS02 rna ? GO:0003735 ... P60493 22605777
    293790 4v8i:B0 (2.7) BS03 MG ? GO:0003735 ... P60493 22605777
    293791 4v8i:B1 (2.7) BS01 rna ? GO:0003735 ... P60494 22605777
    293792 4v8i:B2 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    293793 4v8i:B3 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    293794 4v8i:B3 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    293795 4v8i:B3 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 22605777
    293796 4v8i:B3 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 22605777
    293797 4v8i:B4 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    293798 4v8i:B4 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    293799 4v8i:B5 (2.7) BS01 rna ? GO:0003735 ... P80339 22605777
    293800 4v8i:B5 (2.7) BS02 ZN ? GO:0003735 ... P80339 22605777

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).