SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    294601 4v8n:BT (3.1) BS02 rna ? GO:0003735 ... P60490 23542153
    294602 4v8n:BU (3.1) BS01 rna ? GO:0000027 ... P60491 23542153
    294603 4v8n:BV (3.1) BS01 rna ? GO:0003723 ... P60492 23542153
    294604 4v8n:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 23542153
    294605 4v8n:BX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 23542153
    294606 4v8n:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 23542153
    294607 4v8n:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 23542153
    294608 4v8n:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 23542153
    294609 4v8n:BZ (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 23542153
    294610 4v8n:CB (3.1) BS01 rna ? GO:0003735 ... P80371 23542153
    294611 4v8n:CC (3.1) BS01 rna ? GO:0003676 ... P80372 23542153
    294612 4v8n:CD (3.1) BS01 rna ? GO:0003723 ... P80373 23542153
    294613 4v8n:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 23542153
    294614 4v8n:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 23542153
    294615 4v8n:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 23542153
    294616 4v8n:CG (3.1) BS01 rna ? GO:0000049 ... P17291 23542153
    294617 4v8n:CG (3.1) BS02 rna ? GO:0000049 ... P17291 23542153
    294618 4v8n:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    294619 4v8n:CI (3.1) BS01 rna ? GO:0000049 ... P80374 23542153
    294620 4v8n:CI (3.1) BS02 rna ? GO:0000049 ... P80374 23542153
    294621 4v8n:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 23542153
    294622 4v8n:CJ (3.1) BS02 rna ? GO:0000049 ... Q5SHN7 23542153
    294623 4v8n:CK (3.1) BS01 rna ? GO:0003735 ... P80376 23542153
    294624 4v8n:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 23542153
    294625 4v8n:CM (3.1) BS01 rna ? GO:0000049 ... P80377 23542153
    294626 4v8n:CM (3.1) BS02 rna ? GO:0000049 ... P80377 23542153
    294627 4v8n:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    294628 4v8n:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 23542153
    294629 4v8n:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 23542153
    294630 4v8n:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 23542153
    294631 4v8n:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 23542153
    294632 4v8n:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    294633 4v8n:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 23542153
    294634 4v8n:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 23542153
    294635 4v8n:CT (3.1) BS01 rna ? GO:0003723 ... P80380 23542153
    294636 4v8n:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 23542153
    294637 4v8n:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 23542153
    294638 4v8n:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 23542153
    294639 4v8n:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 23542153
    294640 4v8n:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 23542153
    294641 4v8n:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 23542153
    294642 4v8n:D4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 23542153
    294643 4v8n:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 23542153
    294644 4v8n:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 23542153
    294645 4v8n:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 23542153
    294646 4v8n:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 23542153
    294647 4v8n:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 23542153
    294648 4v8n:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 23542153
    294649 4v8n:DC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 23542153
    294650 4v8n:DD (3.1) BS01 rna ? GO:0002181 ... P60405 23542153
    294651 4v8n:DD (3.1) BS02 rna ? GO:0002181 ... P60405 23542153
    294652 4v8n:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 23542153
    294653 4v8n:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 23542153
    294654 4v8n:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 23542153
    294655 4v8n:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 23542153
    294656 4v8n:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 23542153
    294657 4v8n:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    294658 4v8n:DI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 23542153
    294659 4v8n:DJ (3.1) BS01 rna N/A N/A N/A 23542153
    294660 4v8n:DN (3.1) BS01 rna ? GO:0003729 ... P60488 23542153
    294661 4v8n:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 23542153
    294662 4v8n:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 23542153
    294663 4v8n:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 23542153
    294664 4v8n:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 23542153
    294665 4v8n:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 23542153
    294666 4v8n:DQ (3.1) BS03 rna ? GO:0000049 ... P60489 23542153
    294667 4v8n:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 23542153
    294668 4v8n:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 23542153
    294669 4v8n:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 23542153
    294670 4v8n:DT (3.1) BS01 rna ? GO:0003735 ... P60490 23542153
    294671 4v8n:DT (3.1) BS02 rna ? GO:0003735 ... P60490 23542153
    294672 4v8n:DU (3.1) BS01 rna ? GO:0000027 ... P60491 23542153
    294673 4v8n:DV (3.1) BS01 rna ? GO:0003723 ... P60492 23542153
    294674 4v8n:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 23542153
    294675 4v8n:DX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 23542153
    294676 4v8n:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 23542153
    294677 4v8n:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 23542153
    294678 4v8n:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 23542153
    294679 4v8n:DZ (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 23542153
    294680 4v8n:DZ (3.1) BS04 ZN ? GO:0003723 ... Q5SHZ1 23542153
    294681 4v8o:AB (3.8) BS01 rna ? GO:0003735 ... P80371 21903932
    294682 4v8o:AC (3.8) BS01 rna ? GO:0003729 ... P80372 21903932
    294683 4v8o:AD (3.8) BS01 rna ? GO:0003735 ... P80373 21903932
    294684 4v8o:AE (3.8) BS01 rna ? GO:0005840 ... Q5SHQ5 21903932
    294685 4v8o:AF (3.8) BS01 rna ? GO:0003735 ... Q5SLP8 21903932
    294686 4v8o:AG (3.8) BS01 rna ? GO:0000049 ... P17291 21903932
    294687 4v8o:AH (3.8) BS01 rna N/A N/A N/A 21903932
    294688 4v8o:AI (3.8) BS01 rna ? GO:0000049 ... P80374 21903932
    294689 4v8o:AI (3.8) BS02 rna ? GO:0000049 ... P80374 21903932
    294690 4v8o:AJ (3.8) BS01 rna ? GO:0000049 ... Q5SHN7 21903932
    294691 4v8o:AK (3.8) BS01 rna ? GO:0005840 ... P80376 21903932
    294692 4v8o:AL (3.8) BS01 rna ? GO:0000049 ... Q5SHN3 21903932
    294693 4v8o:AM (3.8) BS01 rna ? GO:0000049 ... P80377 21903932
    294694 4v8o:AN (3.8) BS01 rna N/A N/A N/A 21903932
    294695 4v8o:AO (3.8) BS01 rna ? GO:0005737 ... Q5SJ76 21903932
    294696 4v8o:AP (3.8) BS01 rna ? GO:0003735 ... Q5SJH3 21903932
    294697 4v8o:AQ (3.8) BS01 rna N/A N/A N/A 21903932
    294698 4v8o:AR (3.8) BS01 rna ? GO:0003735 ... Q5SLQ0 21903932
    294699 4v8o:AS (3.8) BS01 rna ? GO:0000028 ... Q5SHP2 21903932
    294700 4v8o:AS (3.8) BS02 rna ? GO:0000028 ... Q5SHP2 21903932
    294701 4v8o:AT (3.8) BS01 rna ? GO:0005840 ... P80380 21903932
    294702 4v8o:AY (3.8) BS01 rna ? GO:0003924 ... B1XFI4 21903932
    294703 4v8o:AY (3.8) BS02 rna ? GO:0003924 ... B1XFI4 21903932
    294704 4v8o:B0 (3.8) BS01 rna ? GO:0003735 ... P60493 21903932
    294705 4v8o:B0 (3.8) BS02 rna ? GO:0003735 ... P60493 21903932
    294706 4v8o:B1 (3.8) BS01 rna ? GO:0005840 ... P60494 21903932
    294707 4v8o:B2 (3.8) BS01 rna ? GO:0005840 ... Q5SHP6 21903932
    294708 4v8o:B3 (3.8) BS01 rna ? GO:0005840 ... Q5SHQ6 21903932
    294709 4v8o:B3 (3.8) BS02 rna ? GO:0005840 ... Q5SHQ6 21903932
    294710 4v8o:B5 (3.8) BS01 rna ? GO:0005840 ... P80339 21903932
    294711 4v8o:B6 (3.8) BS01 rna ? GO:0000049 ... P35871 21903932
    294712 4v8o:B7 (3.8) BS01 rna ? GO:0005840 ... P80340 21903932
    294713 4v8o:B8 (3.8) BS01 rna ? GO:0003735 ... Q5SKU1 21903932
    294714 4v8o:B9 (3.8) BS01 rna ? GO:0005737 ... Q5SHR2 21903932
    294715 4v8o:BC (3.8) BS01 rna ? GO:0000049 ... Q5SLP7 21903932
    294716 4v8o:BD (3.8) BS01 rna ? GO:0002181 ... P60405 21903932
    294717 4v8o:BD (3.8) BS02 rna ? GO:0002181 ... P60405 21903932
    294718 4v8o:BE (3.8) BS01 rna ? GO:0003735 ... Q5SHN8 21903932
    294719 4v8o:BF (3.8) BS01 rna ? GO:0003735 ... Q5SHN9 21903932
    294720 4v8o:BG (3.8) BS01 rna ? GO:0000049 ... Q5SHQ0 21903932
    294721 4v8o:BG (3.8) BS02 rna ? GO:0000049 ... Q5SHQ0 21903932
    294722 4v8o:BH (3.8) BS01 rna N/A N/A N/A 21903932
    294723 4v8o:BJ (3.8) BS01 rna N/A N/A N/A 21903932
    294724 4v8o:BK (3.8) BS01 rna N/A N/A N/A 21903932
    294725 4v8o:BN (3.8) BS01 rna ? GO:0003729 ... P60488 21903932
    294726 4v8o:BO (3.8) BS01 rna ? GO:0003735 ... Q5SHP8 21903932
    294727 4v8o:BO (3.8) BS02 rna ? GO:0003735 ... Q5SHP8 21903932
    294728 4v8o:BP (3.8) BS01 rna ? GO:0003735 ... Q5SHQ7 21903932
    294729 4v8o:BQ (3.8) BS01 rna ? GO:0000049 ... P60489 21903932
    294730 4v8o:BQ (3.8) BS02 rna ? GO:0000049 ... P60489 21903932
    294731 4v8o:BR (3.8) BS01 rna ? GO:0003735 ... Q9Z9H5 21903932
    294732 4v8o:BS (3.8) BS01 rna ? GO:0005737 ... Q5SHQ4 21903932
    294733 4v8o:BS (3.8) BS02 rna ? GO:0005737 ... Q5SHQ4 21903932
    294734 4v8o:BT (3.8) BS01 rna ? GO:0003735 ... P60490 21903932
    294735 4v8o:BT (3.8) BS02 rna ? GO:0003735 ... P60490 21903932
    294736 4v8o:BU (3.8) BS01 rna ? GO:0000027 ... P60491 21903932
    294737 4v8o:BV (3.8) BS01 rna ? GO:0003735 ... P60492 21903932
    294738 4v8o:BW (3.8) BS01 rna ? GO:0003735 ... Q5SHP3 21903932
    294739 4v8o:BX (3.8) BS01 rna ? GO:0005840 ... Q5SHP0 21903932
    294740 4v8o:BY (3.8) BS01 rna ? GO:0005840 ... Q5SHP9 21903932
    294741 4v8o:BZ (3.8) BS01 rna ? GO:0003723 ... Q5SHZ1 21903932
    294742 4v8o:BZ (3.8) BS02 rna ? GO:0003723 ... Q5SHZ1 21903932
    294743 4v8p:AA (3.52) BS01 rna ? GO:0003723 ... P0DJ24 22052974
    294744 4v8p:AA (3.52) BS02 rna ? GO:0003723 ... P0DJ24 22052974
    294745 4v8p:AA (3.52) BS03 ZN ? GO:0003723 ... P0DJ24 22052974
    294746 4v8p:AB (3.52) BS01 rna ? GO:0003735 ... P0DJ61 22052974
    294747 4v8p:AB (3.52) BS02 rna ? GO:0003735 ... P0DJ61 22052974
    294748 4v8p:AC (3.52) BS01 rna ? GO:0003735 ... Q22X38 22052974
    294749 4v8p:AC (3.52) BS02 ZN ? GO:0003735 ... Q22X38 22052974
    294750 4v8p:AE (3.52) BS01 rna ? GO:0000027 ... P0DJ56 22052974
    294751 4v8p:AF (3.52) BS01 rna ? GO:0003723 ... Q24C27 22052974
    294752 4v8p:AG (3.52) BS01 rna ? GO:0003723 ... P0DJ59 22052974
    294753 4v8p:AH (3.52) BS01 rna ? GO:0000049 ... P0DJ22 22052974
    294754 4v8p:AK (3.52) BS01 rna ? GO:0003735 ... P0DJ25 22052974
    294755 4v8p:AK (3.52) BS02 ZN ? GO:0003735 ... P0DJ25 22052974
    294756 4v8p:AL (3.52) BS01 rna ? GO:0003735 ... P0DJ23 22052974
    294757 4v8p:AL (3.52) BS02 ZN ? GO:0003735 ... P0DJ23 22052974
    294758 4v8p:AM (3.52) BS01 rna ? GO:0002181 ... Q23BV5 22052974
    294759 4v8p:AN (3.52) BS01 rna ? GO:0003735 ... P0DJ19 22052974
    294760 4v8p:AN (3.52) BS02 rna ? GO:0003735 ... P0DJ19 22052974
    294761 4v8p:AO (3.52) BS01 rna ? GO:0003735 ... P0DJ20 22052974
    294762 4v8p:AP (3.52) BS01 rna ? GO:0003735 ... Q22SV3 22052974
    294763 4v8p:AQ (3.52) BS01 rna ? GO:0003735 ... Q24F59 22052974
    294764 4v8p:AT (3.52) BS01 rna ? GO:0002181 ... P0DJ21 22052974
    294765 4v8p:AU (3.52) BS01 rna ? GO:0003723 ... P0DJ58 22052974
    294766 4v8p:AU (3.52) BS02 rna ? GO:0003723 ... P0DJ58 22052974
    294767 4v8p:AX (3.52) BS01 rna ? GO:0003735 ... P0DJ18 22052974
    294768 4v8p:AX (3.52) BS02 rna ? GO:0003735 ... P0DJ18 22052974
    294769 4v8p:BA (3.52) BS01 rna ? GO:0002181 ... P0DJ52 22052974
    294770 4v8p:BB (3.52) BS01 rna ? GO:0003723 ... O96774 22052974
    294771 4v8p:BC (3.52) BS01 rna ? GO:0003735 ... P0DJ55 22052974
    294772 4v8p:BC (3.52) BS02 rna ? GO:0003735 ... P0DJ55 22052974
    294773 4v8p:BD (3.52) BS01 rna ? GO:0003735 ... P24119 22052974
    294774 4v8p:BD (3.52) BS02 rna ? GO:0003735 ... P24119 22052974
    294775 4v8p:BE (3.52) BS01 rna ? GO:0002181 ... Q22AX5 22052974
    294776 4v8p:BF (3.52) BS01 rna ? GO:0003723 ... P0DJ14 22052974
    294777 4v8p:BF (3.52) BS02 rna ? GO:0003723 ... P0DJ14 22052974
    294778 4v8p:BG (3.52) BS01 rna N/A N/A N/A 22052974
    294779 4v8p:BH (3.52) BS01 rna ? GO:0003735 ... Q235M8 22052974
    294780 4v8p:BH (3.52) BS02 rna ? GO:0003735 ... Q235M8 22052974
    294781 4v8p:BI (3.52) BS01 rna ? GO:0003729 ... P0DJ15 22052974
    294782 4v8p:BJ (3.52) BS01 rna ? GO:0003735 ... P0DJ53 22052974
    294783 4v8p:BK (3.52) BS01 rna ? GO:0003735 ... Q00454 22052974
    294784 4v8p:BL (3.52) BS01 rna ? GO:0002181 ... Q22A30 22052974
    294785 4v8p:BL (3.52) BS02 rna ? GO:0002181 ... Q22A30 22052974
    294786 4v8p:BM (3.52) BS01 rna ? GO:0000027 ... Q231U7 22052974
    294787 4v8p:BM (3.52) BS02 rna ? GO:0000027 ... Q231U7 22052974
    294788 4v8p:BN (3.52) BS01 rna ? GO:0003723 ... P0DJ17 22052974
    294789 4v8p:BO (3.52) BS01 rna ? GO:0003723 ... P0DJ60 22052974
    294790 4v8p:BO (3.52) BS02 rna ? GO:0003723 ... P0DJ60 22052974
    294791 4v8p:BP (3.52) BS01 rna ? GO:0003735 ... Q23TC8 22052974
    294792 4v8p:BP (3.52) BS02 rna ? GO:0003735 ... Q23TC8 22052974
    294793 4v8p:BQ (3.52) BS01 rna ? GO:0002181 ... P0DJ16 22052974
    294794 4v8p:BQ (3.52) BS02 rna ? GO:0002181 ... P0DJ16 22052974
    294795 4v8p:BR (3.52) BS01 rna ? GO:0003735 ... P0DJ57 22052974
    294796 4v8p:BR (3.52) BS02 rna ? GO:0003735 ... P0DJ57 22052974
    294797 4v8p:BS (3.52) BS01 rna ? GO:0003723 ... Q23F79 22052974
    294798 4v8p:BS (3.52) BS02 rna ? GO:0003723 ... Q23F79 22052974
    294799 4v8p:BT (3.52) BS01 rna ? GO:0002181 ... P0DJ54 22052974
    294800 4v8p:BU (3.52) BS01 rna ? GO:0000463 ... P0DJ51 22052974

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).