SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    294801 4v8p:BU (3.52) BS02 rna ? GO:0000463 ... P0DJ51 22052974
    294802 4v8p:BV (3.52) BS01 rna ? GO:0000463 ... P0DJ13 22052974
    294803 4v8p:BV (3.52) BS02 rna ? GO:0000463 ... P0DJ13 22052974
    294804 4v8p:BW (3.52) BS01 rna ? GO:0002181 ... Q22DH9 22052974
    294805 4v8p:BX (3.52) BS01 rna ? GO:0003735 ... Q236T0 22052974
    294806 4v8p:BY (3.52) BS01 rna ? GO:0003735 ... Q23G98 22052974
    294807 4v8p:BY (3.52) BS02 ZN ? GO:0003735 ... Q23G98 22052974
    294808 4v8p:CA (3.52) BS01 rna ? GO:0002181 ... P0DJ52 22052974
    294809 4v8p:CB (3.52) BS01 rna ? GO:0003723 ... O96774 22052974
    294810 4v8p:CC (3.52) BS01 rna ? GO:0003735 ... P0DJ55 22052974
    294811 4v8p:CC (3.52) BS02 rna ? GO:0003735 ... P0DJ55 22052974
    294812 4v8p:CD (3.52) BS01 rna ? GO:0003735 ... P24119 22052974
    294813 4v8p:CD (3.52) BS02 rna ? GO:0003735 ... P24119 22052974
    294814 4v8p:CE (3.52) BS01 rna ? GO:0002181 ... Q22AX5 22052974
    294815 4v8p:CF (3.52) BS01 rna ? GO:0003723 ... P0DJ14 22052974
    294816 4v8p:CF (3.52) BS02 rna ? GO:0003723 ... P0DJ14 22052974
    294817 4v8p:CG (3.52) BS01 rna N/A N/A N/A 22052974
    294818 4v8p:CH (3.52) BS01 rna ? GO:0003735 ... Q235M8 22052974
    294819 4v8p:CH (3.52) BS02 rna ? GO:0003735 ... Q235M8 22052974
    294820 4v8p:CI (3.52) BS01 rna ? GO:0003729 ... P0DJ15 22052974
    294821 4v8p:CJ (3.52) BS01 rna ? GO:0003735 ... P0DJ53 22052974
    294822 4v8p:CK (3.52) BS01 rna ? GO:0003735 ... Q00454 22052974
    294823 4v8p:CL (3.52) BS01 rna ? GO:0002181 ... Q22A30 22052974
    294824 4v8p:CL (3.52) BS02 rna ? GO:0002181 ... Q22A30 22052974
    294825 4v8p:CM (3.52) BS01 rna ? GO:0000027 ... Q231U7 22052974
    294826 4v8p:CM (3.52) BS02 rna ? GO:0000027 ... Q231U7 22052974
    294827 4v8p:CN (3.52) BS01 rna ? GO:0003723 ... P0DJ17 22052974
    294828 4v8p:CO (3.52) BS01 rna ? GO:0003723 ... P0DJ60 22052974
    294829 4v8p:CP (3.52) BS01 rna ? GO:0003735 ... Q23TC8 22052974
    294830 4v8p:CP (3.52) BS02 rna ? GO:0003735 ... Q23TC8 22052974
    294831 4v8p:CQ (3.52) BS01 rna ? GO:0002181 ... P0DJ16 22052974
    294832 4v8p:CQ (3.52) BS02 rna ? GO:0002181 ... P0DJ16 22052974
    294833 4v8p:CR (3.52) BS01 rna ? GO:0003735 ... P0DJ57 22052974
    294834 4v8p:CR (3.52) BS02 rna ? GO:0003735 ... P0DJ57 22052974
    294835 4v8p:CS (3.52) BS01 rna ? GO:0003723 ... Q23F79 22052974
    294836 4v8p:CS (3.52) BS02 rna ? GO:0003723 ... Q23F79 22052974
    294837 4v8p:CT (3.52) BS01 rna ? GO:0002181 ... P0DJ54 22052974
    294838 4v8p:CU (3.52) BS01 rna ? GO:0000463 ... P0DJ51 22052974
    294839 4v8p:CU (3.52) BS02 rna ? GO:0000463 ... P0DJ51 22052974
    294840 4v8p:CV (3.52) BS01 rna ? GO:0000463 ... P0DJ13 22052974
    294841 4v8p:CV (3.52) BS02 rna ? GO:0000463 ... P0DJ13 22052974
    294842 4v8p:CW (3.52) BS01 rna ? GO:0002181 ... Q22DH9 22052974
    294843 4v8p:CX (3.52) BS01 rna ? GO:0003735 ... Q236T0 22052974
    294844 4v8p:CY (3.52) BS01 rna ? GO:0003735 ... Q23G98 22052974
    294845 4v8p:CY (3.52) BS02 ZN ? GO:0003735 ... Q23G98 22052974
    294846 4v8p:DA (3.52) BS01 rna ? GO:0003723 ... P0DJ24 22052974
    294847 4v8p:DA (3.52) BS02 rna ? GO:0003723 ... P0DJ24 22052974
    294848 4v8p:DA (3.52) BS03 ZN ? GO:0003723 ... P0DJ24 22052974
    294849 4v8p:DB (3.52) BS01 rna ? GO:0003735 ... P0DJ61 22052974
    294850 4v8p:DB (3.52) BS02 rna ? GO:0003735 ... P0DJ61 22052974
    294851 4v8p:DC (3.52) BS01 rna ? GO:0003735 ... Q22X38 22052974
    294852 4v8p:DC (3.52) BS02 ZN ? GO:0003735 ... Q22X38 22052974
    294853 4v8p:DE (3.52) BS01 rna ? GO:0000027 ... P0DJ56 22052974
    294854 4v8p:DF (3.52) BS01 rna ? GO:0003723 ... Q24C27 22052974
    294855 4v8p:DG (3.52) BS01 rna ? GO:0003723 ... P0DJ59 22052974
    294856 4v8p:DH (3.52) BS01 rna ? GO:0000049 ... P0DJ22 22052974
    294857 4v8p:DK (3.52) BS01 rna ? GO:0003735 ... P0DJ25 22052974
    294858 4v8p:DK (3.52) BS02 ZN ? GO:0003735 ... P0DJ25 22052974
    294859 4v8p:DL (3.52) BS01 rna ? GO:0003735 ... P0DJ23 22052974
    294860 4v8p:DL (3.52) BS02 ZN ? GO:0003735 ... P0DJ23 22052974
    294861 4v8p:DM (3.52) BS01 rna ? GO:0002181 ... Q23BV5 22052974
    294862 4v8p:DN (3.52) BS01 rna ? GO:0003735 ... P0DJ19 22052974
    294863 4v8p:DO (3.52) BS01 rna ? GO:0003735 ... P0DJ20 22052974
    294864 4v8p:DP (3.52) BS01 rna ? GO:0003735 ... Q22SV3 22052974
    294865 4v8p:DQ (3.52) BS01 rna ? GO:0003735 ... Q24F59 22052974
    294866 4v8p:DT (3.52) BS01 rna ? GO:0002181 ... P0DJ21 22052974
    294867 4v8p:DU (3.52) BS01 rna ? GO:0003723 ... P0DJ58 22052974
    294868 4v8p:DU (3.52) BS02 rna ? GO:0003723 ... P0DJ58 22052974
    294869 4v8p:DX (3.52) BS01 rna ? GO:0003735 ... P0DJ18 22052974
    294870 4v8p:DX (3.52) BS02 rna ? GO:0003735 ... P0DJ18 22052974
    294871 4v8p:EA (3.52) BS01 rna ? GO:0002181 ... P0DJ52 22052974
    294872 4v8p:EB (3.52) BS01 rna ? GO:0003723 ... O96774 22052974
    294873 4v8p:EC (3.52) BS01 rna ? GO:0003735 ... P0DJ55 22052974
    294874 4v8p:EC (3.52) BS02 rna ? GO:0003735 ... P0DJ55 22052974
    294875 4v8p:ED (3.52) BS01 rna ? GO:0003735 ... P24119 22052974
    294876 4v8p:ED (3.52) BS02 rna ? GO:0003735 ... P24119 22052974
    294877 4v8p:EE (3.52) BS01 rna ? GO:0002181 ... Q22AX5 22052974
    294878 4v8p:EF (3.52) BS01 rna ? GO:0003723 ... P0DJ14 22052974
    294879 4v8p:EF (3.52) BS02 rna ? GO:0003723 ... P0DJ14 22052974
    294880 4v8p:EG (3.52) BS01 rna N/A N/A N/A 22052974
    294881 4v8p:EH (3.52) BS01 rna ? GO:0003735 ... Q235M8 22052974
    294882 4v8p:EH (3.52) BS02 rna ? GO:0003735 ... Q235M8 22052974
    294883 4v8p:EI (3.52) BS01 rna ? GO:0003729 ... P0DJ15 22052974
    294884 4v8p:EJ (3.52) BS01 rna ? GO:0003735 ... P0DJ53 22052974
    294885 4v8p:EK (3.52) BS01 rna ? GO:0003735 ... Q00454 22052974
    294886 4v8p:EL (3.52) BS01 rna ? GO:0002181 ... Q22A30 22052974
    294887 4v8p:EL (3.52) BS02 rna ? GO:0002181 ... Q22A30 22052974
    294888 4v8p:EM (3.52) BS01 rna ? GO:0000027 ... Q231U7 22052974
    294889 4v8p:EM (3.52) BS02 rna ? GO:0000027 ... Q231U7 22052974
    294890 4v8p:EN (3.52) BS01 rna ? GO:0003723 ... P0DJ17 22052974
    294891 4v8p:EO (3.52) BS01 rna ? GO:0003723 ... P0DJ60 22052974
    294892 4v8p:EP (3.52) BS01 rna ? GO:0003735 ... Q23TC8 22052974
    294893 4v8p:EP (3.52) BS02 rna ? GO:0003735 ... Q23TC8 22052974
    294894 4v8p:EQ (3.52) BS01 rna ? GO:0002181 ... P0DJ16 22052974
    294895 4v8p:EQ (3.52) BS02 rna ? GO:0002181 ... P0DJ16 22052974
    294896 4v8p:ER (3.52) BS01 rna ? GO:0003735 ... P0DJ57 22052974
    294897 4v8p:ER (3.52) BS02 rna ? GO:0003735 ... P0DJ57 22052974
    294898 4v8p:ES (3.52) BS01 rna ? GO:0003723 ... Q23F79 22052974
    294899 4v8p:ES (3.52) BS02 rna ? GO:0003723 ... Q23F79 22052974
    294900 4v8p:ET (3.52) BS01 rna ? GO:0002181 ... P0DJ54 22052974
    294901 4v8p:EU (3.52) BS01 rna ? GO:0000463 ... P0DJ51 22052974
    294902 4v8p:EU (3.52) BS02 rna ? GO:0000463 ... P0DJ51 22052974
    294903 4v8p:EV (3.52) BS01 rna ? GO:0000463 ... P0DJ13 22052974
    294904 4v8p:EV (3.52) BS02 rna ? GO:0000463 ... P0DJ13 22052974
    294905 4v8p:EW (3.52) BS01 rna ? GO:0002181 ... Q22DH9 22052974
    294906 4v8p:EX (3.52) BS01 rna ? GO:0003735 ... Q236T0 22052974
    294907 4v8p:EY (3.52) BS01 rna ? GO:0003735 ... Q23G98 22052974
    294908 4v8p:EY (3.52) BS02 rna ? GO:0003735 ... Q23G98 22052974
    294909 4v8p:EY (3.52) BS03 ZN ? GO:0003735 ... Q23G98 22052974
    294910 4v8p:FA (3.52) BS01 rna ? GO:0003723 ... P0DJ24 22052974
    294911 4v8p:FA (3.52) BS02 rna ? GO:0003723 ... P0DJ24 22052974
    294912 4v8p:FA (3.52) BS03 ZN ? GO:0003723 ... P0DJ24 22052974
    294913 4v8p:FB (3.52) BS01 rna ? GO:0003735 ... P0DJ61 22052974
    294914 4v8p:FB (3.52) BS02 rna ? GO:0003735 ... P0DJ61 22052974
    294915 4v8p:FC (3.52) BS01 rna ? GO:0003735 ... Q22X38 22052974
    294916 4v8p:FC (3.52) BS02 ZN ? GO:0003735 ... Q22X38 22052974
    294917 4v8p:FE (3.52) BS01 rna ? GO:0000027 ... P0DJ56 22052974
    294918 4v8p:FF (3.52) BS01 rna ? GO:0003723 ... Q24C27 22052974
    294919 4v8p:FG (3.52) BS01 rna ? GO:0003723 ... P0DJ59 22052974
    294920 4v8p:FH (3.52) BS01 rna ? GO:0000049 ... P0DJ22 22052974
    294921 4v8p:FK (3.52) BS01 rna ? GO:0003735 ... P0DJ25 22052974
    294922 4v8p:FK (3.52) BS02 ZN ? GO:0003735 ... P0DJ25 22052974
    294923 4v8p:FL (3.52) BS01 rna ? GO:0003735 ... P0DJ23 22052974
    294924 4v8p:FL (3.52) BS02 ZN ? GO:0003735 ... P0DJ23 22052974
    294925 4v8p:FM (3.52) BS01 rna ? GO:0002181 ... Q23BV5 22052974
    294926 4v8p:FN (3.52) BS01 rna ? GO:0003735 ... P0DJ19 22052974
    294927 4v8p:FN (3.52) BS02 rna ? GO:0003735 ... P0DJ19 22052974
    294928 4v8p:FO (3.52) BS01 rna ? GO:0003735 ... P0DJ20 22052974
    294929 4v8p:FP (3.52) BS01 rna ? GO:0003735 ... Q22SV3 22052974
    294930 4v8p:FQ (3.52) BS01 rna ? GO:0003735 ... Q24F59 22052974
    294931 4v8p:FT (3.52) BS01 rna ? GO:0002181 ... P0DJ21 22052974
    294932 4v8p:FU (3.52) BS01 rna ? GO:0003723 ... P0DJ58 22052974
    294933 4v8p:FU (3.52) BS02 rna ? GO:0003723 ... P0DJ58 22052974
    294934 4v8p:FX (3.52) BS01 rna ? GO:0003735 ... P0DJ18 22052974
    294935 4v8p:FX (3.52) BS02 rna ? GO:0003735 ... P0DJ18 22052974
    294936 4v8p:GA (3.52) BS01 rna ? GO:0002181 ... P0DJ52 22052974
    294937 4v8p:GB (3.52) BS01 rna ? GO:0003723 ... O96774 22052974
    294938 4v8p:GC (3.52) BS01 rna ? GO:0003735 ... P0DJ55 22052974
    294939 4v8p:GC (3.52) BS02 rna ? GO:0003735 ... P0DJ55 22052974
    294940 4v8p:GD (3.52) BS01 rna ? GO:0003735 ... P24119 22052974
    294941 4v8p:GD (3.52) BS02 rna ? GO:0003735 ... P24119 22052974
    294942 4v8p:GE (3.52) BS01 rna ? GO:0002181 ... Q22AX5 22052974
    294943 4v8p:GF (3.52) BS01 rna ? GO:0003723 ... P0DJ14 22052974
    294944 4v8p:GF (3.52) BS02 rna ? GO:0003723 ... P0DJ14 22052974
    294945 4v8p:GG (3.52) BS01 rna N/A N/A N/A 22052974
    294946 4v8p:GH (3.52) BS01 rna ? GO:0003735 ... Q235M8 22052974
    294947 4v8p:GH (3.52) BS02 rna ? GO:0003735 ... Q235M8 22052974
    294948 4v8p:GI (3.52) BS01 rna ? GO:0003729 ... P0DJ15 22052974
    294949 4v8p:GJ (3.52) BS01 rna ? GO:0003735 ... P0DJ53 22052974
    294950 4v8p:GK (3.52) BS01 rna ? GO:0003735 ... Q00454 22052974
    294951 4v8p:GL (3.52) BS01 rna ? GO:0002181 ... Q22A30 22052974
    294952 4v8p:GL (3.52) BS02 rna ? GO:0002181 ... Q22A30 22052974
    294953 4v8p:GM (3.52) BS01 rna ? GO:0000027 ... Q231U7 22052974
    294954 4v8p:GM (3.52) BS02 rna ? GO:0000027 ... Q231U7 22052974
    294955 4v8p:GN (3.52) BS01 rna ? GO:0003723 ... P0DJ17 22052974
    294956 4v8p:GO (3.52) BS01 rna ? GO:0003723 ... P0DJ60 22052974
    294957 4v8p:GP (3.52) BS01 rna ? GO:0003735 ... Q23TC8 22052974
    294958 4v8p:GP (3.52) BS02 rna ? GO:0003735 ... Q23TC8 22052974
    294959 4v8p:GQ (3.52) BS01 rna ? GO:0002181 ... P0DJ16 22052974
    294960 4v8p:GQ (3.52) BS02 rna ? GO:0002181 ... P0DJ16 22052974
    294961 4v8p:GR (3.52) BS01 rna ? GO:0003735 ... P0DJ57 22052974
    294962 4v8p:GR (3.52) BS02 rna ? GO:0003735 ... P0DJ57 22052974
    294963 4v8p:GS (3.52) BS01 rna ? GO:0003723 ... Q23F79 22052974
    294964 4v8p:GS (3.52) BS02 rna ? GO:0003723 ... Q23F79 22052974
    294965 4v8p:GT (3.52) BS01 rna ? GO:0002181 ... P0DJ54 22052974
    294966 4v8p:GU (3.52) BS01 rna ? GO:0000463 ... P0DJ51 22052974
    294967 4v8p:GU (3.52) BS02 rna ? GO:0000463 ... P0DJ51 22052974
    294968 4v8p:GV (3.52) BS01 rna ? GO:0000463 ... P0DJ13 22052974
    294969 4v8p:GV (3.52) BS02 rna ? GO:0000463 ... P0DJ13 22052974
    294970 4v8p:GW (3.52) BS01 rna ? GO:0002181 ... Q22DH9 22052974
    294971 4v8p:GX (3.52) BS01 rna ? GO:0003735 ... Q236T0 22052974
    294972 4v8p:GY (3.52) BS01 rna ? GO:0003735 ... Q23G98 22052974
    294973 4v8p:GY (3.52) BS02 ZN ? GO:0003735 ... Q23G98 22052974
    294974 4v8p:HA (3.52) BS01 rna ? GO:0003723 ... P0DJ24 22052974
    294975 4v8p:HA (3.52) BS02 rna ? GO:0003723 ... P0DJ24 22052974
    294976 4v8p:HA (3.52) BS03 ZN ? GO:0003723 ... P0DJ24 22052974
    294977 4v8p:HB (3.52) BS01 rna ? GO:0003735 ... P0DJ61 22052974
    294978 4v8p:HB (3.52) BS02 rna ? GO:0003735 ... P0DJ61 22052974
    294979 4v8p:HC (3.52) BS01 rna ? GO:0003735 ... Q22X38 22052974
    294980 4v8p:HC (3.52) BS02 ZN ? GO:0003735 ... Q22X38 22052974
    294981 4v8p:HE (3.52) BS01 rna ? GO:0000027 ... P0DJ56 22052974
    294982 4v8p:HF (3.52) BS01 rna ? GO:0003723 ... Q24C27 22052974
    294983 4v8p:HG (3.52) BS01 rna ? GO:0003723 ... P0DJ59 22052974
    294984 4v8p:HH (3.52) BS01 rna ? GO:0000049 ... P0DJ22 22052974
    294985 4v8p:HK (3.52) BS01 rna ? GO:0003735 ... P0DJ25 22052974
    294986 4v8p:HK (3.52) BS02 ZN ? GO:0003735 ... P0DJ25 22052974
    294987 4v8p:HL (3.52) BS01 rna ? GO:0003735 ... P0DJ23 22052974
    294988 4v8p:HL (3.52) BS02 ZN ? GO:0003735 ... P0DJ23 22052974
    294989 4v8p:HM (3.52) BS01 rna ? GO:0002181 ... Q23BV5 22052974
    294990 4v8p:HN (3.52) BS01 rna ? GO:0003735 ... P0DJ19 22052974
    294991 4v8p:HO (3.52) BS01 rna ? GO:0003735 ... P0DJ20 22052974
    294992 4v8p:HP (3.52) BS01 rna ? GO:0003735 ... Q22SV3 22052974
    294993 4v8p:HQ (3.52) BS01 rna ? GO:0003735 ... Q24F59 22052974
    294994 4v8p:HT (3.52) BS01 rna ? GO:0002181 ... P0DJ21 22052974
    294995 4v8p:HU (3.52) BS01 rna ? GO:0003723 ... P0DJ58 22052974
    294996 4v8p:HU (3.52) BS02 rna ? GO:0003723 ... P0DJ58 22052974
    294997 4v8p:HX (3.52) BS01 rna ? GO:0003735 ... P0DJ18 22052974
    294998 4v8p:HX (3.52) BS02 rna ? GO:0003735 ... P0DJ18 22052974
    294999 4v8q:A0 (3.1) BS01 rna ? GO:0003735 ... P60493 22422985
    295000 4v8q:A0 (3.1) BS02 rna ? GO:0003735 ... P60493 22422985

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).