SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    295401 4v8x:AO (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 23945936
    295402 4v8x:AO (3.35) BS02 rna ? GO:0003735 ... Q5SJ76 23945936
    295403 4v8x:AP (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 23945936
    295404 4v8x:AQ (3.35) BS01 rna ? GO:0003735 ... P0DOY7 23945936
    295405 4v8x:AR (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 23945936
    295406 4v8x:AS (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 23945936
    295407 4v8x:AT (3.35) BS01 rna ? GO:0003723 ... P80380 23945936
    295408 4v8x:AY (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    295409 4v8x:AY (3.35) BS02 rna 3.1.-.- GO:0003723 ... P69348 23945936
    295410 4v8x:AY (3.35) BS03 rna 3.1.-.- GO:0003723 ... P69348 23945936
    295411 4v8x:AZ (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    295412 4v8x:B0 (3.35) BS01 rna ? GO:0003735 ... P60493 23945936
    295413 4v8x:B0 (3.35) BS02 rna ? GO:0003735 ... P60493 23945936
    295414 4v8x:B0 (3.35) BS03 rna ? GO:0003735 ... P60493 23945936
    295415 4v8x:B1 (3.35) BS01 rna ? GO:0003735 ... P60494 23945936
    295416 4v8x:B1 (3.35) BS02 rna ? GO:0003735 ... P60494 23945936
    295417 4v8x:B2 (3.35) BS01 rna ? GO:0003735 ... Q5SHP6 23945936
    295418 4v8x:B3 (3.35) BS01 rna ? GO:0003735 ... Q5SHQ6 23945936
    295419 4v8x:B3 (3.35) BS02 rna ? GO:0003735 ... Q5SHQ6 23945936
    295420 4v8x:B4 (3.35) BS01 rna ? GO:0003735 ... Q5SJE1 23945936
    295421 4v8x:B5 (3.35) BS01 rna ? GO:0003735 ... P80339 23945936
    295422 4v8x:B6 (3.35) BS01 rna ? GO:0000049 ... P35871 23945936
    295423 4v8x:B7 (3.35) BS01 rna ? GO:0003735 ... P80340 23945936
    295424 4v8x:B8 (3.35) BS01 rna ? GO:0003735 ... Q5SKU1 23945936
    295425 4v8x:B9 (3.35) BS01 rna ? GO:0003735 ... Q5SHR2 23945936
    295426 4v8x:BC (3.35) BS01 rna ? GO:0000049 ... Q5SLP7 23945936
    295427 4v8x:BD (3.35) BS01 rna ? GO:0002181 ... P60405 23945936
    295428 4v8x:BD (3.35) BS02 rna ? GO:0002181 ... P60405 23945936
    295429 4v8x:BE (3.35) BS01 rna ? GO:0003735 ... Q5SHN8 23945936
    295430 4v8x:BF (3.35) BS01 rna ? GO:0003735 ... Q5SHN9 23945936
    295431 4v8x:BG (3.35) BS01 rna ? GO:0000049 ... Q5SHQ0 23945936
    295432 4v8x:BG (3.35) BS02 rna ? GO:0000049 ... Q5SHQ0 23945936
    295433 4v8x:BG (3.35) BS03 rna ? GO:0000049 ... Q5SHQ0 23945936
    295434 4v8x:BH (3.35) BS01 rna ? GO:0002181 ... P0DOY8 23945936
    295435 4v8x:BI (3.35) BS01 rna ? GO:0003735 ... Q5SLQ1 23945936
    295436 4v8x:BJ (3.35) BS01 rna N/A N/A N/A 23945936
    295437 4v8x:BN (3.35) BS01 rna ? GO:0003729 ... P60488 23945936
    295438 4v8x:BO (3.35) BS01 rna ? GO:0003735 ... Q5SHP8 23945936
    295439 4v8x:BP (3.35) BS01 rna ? GO:0003735 ... Q5SHQ7 23945936
    295440 4v8x:BQ (3.35) BS01 rna ? GO:0000049 ... P60489 23945936
    295441 4v8x:BQ (3.35) BS02 rna ? GO:0000049 ... P60489 23945936
    295442 4v8x:BR (3.35) BS01 rna ? GO:0003735 ... Q9Z9H5 23945936
    295443 4v8x:BS (3.35) BS01 rna ? GO:0003735 ... Q5SHQ4 23945936
    295444 4v8x:BS (3.35) BS02 rna ? GO:0003735 ... Q5SHQ4 23945936
    295445 4v8x:BT (3.35) BS01 rna ? GO:0003735 ... P60490 23945936
    295446 4v8x:BT (3.35) BS02 rna ? GO:0003735 ... P60490 23945936
    295447 4v8x:BU (3.35) BS01 rna ? GO:0000027 ... P60491 23945936
    295448 4v8x:BV (3.35) BS01 rna ? GO:0003723 ... P60492 23945936
    295449 4v8x:BW (3.35) BS01 rna ? GO:0003735 ... Q5SHP3 23945936
    295450 4v8x:BX (3.35) BS01 rna ? GO:0003735 ... Q5SHP0 23945936
    295451 4v8x:BY (3.35) BS01 rna ? GO:0003723 ... Q5SHP9 23945936
    295452 4v8x:BZ (3.35) BS01 rna ? GO:0003723 ... Q5SHZ1 23945936
    295453 4v8x:BZ (3.35) BS02 rna ? GO:0003723 ... Q5SHZ1 23945936
    295454 4v8x:BZ (3.35) BS03 rna ? GO:0003723 ... Q5SHZ1 23945936
    295455 4v8x:CB (3.35) BS01 rna ? GO:0003735 ... P80371 23945936
    295456 4v8x:CC (3.35) BS01 rna ? GO:0003676 ... P80372 23945936
    295457 4v8x:CD (3.35) BS01 rna ? GO:0003723 ... P80373 23945936
    295458 4v8x:CD (3.35) BS02 ZN ? GO:0003723 ... P80373 23945936
    295459 4v8x:CE (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 23945936
    295460 4v8x:CF (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 23945936
    295461 4v8x:CG (3.35) BS01 rna ? GO:0000049 ... P17291 23945936
    295462 4v8x:CG (3.35) BS02 rna ? GO:0000049 ... P17291 23945936
    295463 4v8x:CH (3.35) BS01 rna ? GO:0003735 ... P0DOY9 23945936
    295464 4v8x:CI (3.35) BS01 rna ? GO:0000049 ... P80374 23945936
    295465 4v8x:CJ (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 23945936
    295466 4v8x:CK (3.35) BS01 rna ? GO:0003735 ... P80376 23945936
    295467 4v8x:CL (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 23945936
    295468 4v8x:CL (3.35) BS02 MG ? GO:0000049 ... Q5SHN3 23945936
    295469 4v8x:CM (3.35) BS01 rna ? GO:0000049 ... P80377 23945936
    295470 4v8x:CM (3.35) BS02 rna ? GO:0000049 ... P80377 23945936
    295471 4v8x:CM (3.35) BS03 rna ? GO:0000049 ... P80377 23945936
    295472 4v8x:CN (3.35) BS01 rna ? GO:0003735 ... P0DOY6 23945936
    295473 4v8x:CN (3.35) BS02 ZN ? GO:0003735 ... P0DOY6 23945936
    295474 4v8x:CO (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 23945936
    295475 4v8x:CO (3.35) BS02 rna ? GO:0003735 ... Q5SJ76 23945936
    295476 4v8x:CP (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 23945936
    295477 4v8x:CQ (3.35) BS01 rna ? GO:0003735 ... P0DOY7 23945936
    295478 4v8x:CR (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 23945936
    295479 4v8x:CS (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 23945936
    295480 4v8x:CT (3.35) BS01 rna ? GO:0003723 ... P80380 23945936
    295481 4v8x:CY (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    295482 4v8x:CY (3.35) BS02 rna 3.1.-.- GO:0003723 ... P69348 23945936
    295483 4v8x:CY (3.35) BS03 rna 3.1.-.- GO:0003723 ... P69348 23945936
    295484 4v8x:CZ (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    295485 4v8x:D0 (3.35) BS01 rna ? GO:0003735 ... P60493 23945936
    295486 4v8x:D0 (3.35) BS02 rna ? GO:0003735 ... P60493 23945936
    295487 4v8x:D0 (3.35) BS03 rna ? GO:0003735 ... P60493 23945936
    295488 4v8x:D1 (3.35) BS01 rna ? GO:0003735 ... P60494 23945936
    295489 4v8x:D2 (3.35) BS01 rna ? GO:0003735 ... Q5SHP6 23945936
    295490 4v8x:D3 (3.35) BS01 rna ? GO:0003735 ... Q5SHQ6 23945936
    295491 4v8x:D3 (3.35) BS02 rna ? GO:0003735 ... Q5SHQ6 23945936
    295492 4v8x:D4 (3.35) BS01 rna ? GO:0003735 ... Q5SJE1 23945936
    295493 4v8x:D5 (3.35) BS01 rna ? GO:0003735 ... P80339 23945936
    295494 4v8x:D6 (3.35) BS01 rna ? GO:0000049 ... P35871 23945936
    295495 4v8x:D7 (3.35) BS01 rna ? GO:0003735 ... P80340 23945936
    295496 4v8x:D8 (3.35) BS01 rna ? GO:0003735 ... Q5SKU1 23945936
    295497 4v8x:D9 (3.35) BS01 rna ? GO:0003735 ... Q5SHR2 23945936
    295498 4v8x:DC (3.35) BS01 rna ? GO:0000049 ... Q5SLP7 23945936
    295499 4v8x:DC (3.35) BS02 rna ? GO:0000049 ... Q5SLP7 23945936
    295500 4v8x:DD (3.35) BS01 rna ? GO:0002181 ... P60405 23945936
    295501 4v8x:DE (3.35) BS01 rna ? GO:0003735 ... Q5SHN8 23945936
    295502 4v8x:DF (3.35) BS01 rna ? GO:0003735 ... Q5SHN9 23945936
    295503 4v8x:DF (3.35) BS02 MG ? GO:0003735 ... Q5SHN9 23945936
    295504 4v8x:DG (3.35) BS01 rna ? GO:0000049 ... Q5SHQ0 23945936
    295505 4v8x:DG (3.35) BS02 rna ? GO:0000049 ... Q5SHQ0 23945936
    295506 4v8x:DG (3.35) BS03 rna ? GO:0000049 ... Q5SHQ0 23945936
    295507 4v8x:DH (3.35) BS01 rna ? GO:0002181 ... P0DOY8 23945936
    295508 4v8x:DI (3.35) BS01 rna ? GO:0003735 ... Q5SLQ1 23945936
    295509 4v8x:DI (3.35) BS02 rna ? GO:0003735 ... Q5SLQ1 23945936
    295510 4v8x:DJ (3.35) BS01 rna N/A N/A N/A 23945936
    295511 4v8x:DN (3.35) BS01 rna ? GO:0003729 ... P60488 23945936
    295512 4v8x:DO (3.35) BS01 rna ? GO:0003735 ... Q5SHP8 23945936
    295513 4v8x:DO (3.35) BS02 rna ? GO:0003735 ... Q5SHP8 23945936
    295514 4v8x:DP (3.35) BS01 rna ? GO:0003735 ... Q5SHQ7 23945936
    295515 4v8x:DQ (3.35) BS01 rna ? GO:0000049 ... P60489 23945936
    295516 4v8x:DR (3.35) BS01 rna ? GO:0003735 ... Q9Z9H5 23945936
    295517 4v8x:DR (3.35) BS02 MG ? GO:0003735 ... Q9Z9H5 23945936
    295518 4v8x:DS (3.35) BS01 rna ? GO:0003735 ... Q5SHQ4 23945936
    295519 4v8x:DS (3.35) BS02 rna ? GO:0003735 ... Q5SHQ4 23945936
    295520 4v8x:DT (3.35) BS01 rna ? GO:0003735 ... P60490 23945936
    295521 4v8x:DT (3.35) BS02 rna ? GO:0003735 ... P60490 23945936
    295522 4v8x:DU (3.35) BS01 rna ? GO:0000027 ... P60491 23945936
    295523 4v8x:DV (3.35) BS01 rna ? GO:0003723 ... P60492 23945936
    295524 4v8x:DW (3.35) BS01 rna ? GO:0003735 ... Q5SHP3 23945936
    295525 4v8x:DX (3.35) BS01 rna ? GO:0003735 ... Q5SHP0 23945936
    295526 4v8x:DY (3.35) BS01 rna ? GO:0003723 ... Q5SHP9 23945936
    295527 4v8x:DZ (3.35) BS01 rna ? GO:0003723 ... Q5SHZ1 23945936
    295528 4v8x:DZ (3.35) BS02 rna ? GO:0003723 ... Q5SHZ1 23945936
    295529 4v8x:DZ (3.35) BS03 MG ? GO:0003723 ... Q5SHZ1 23945936
    295530 4v8y:A0 (4.3) BS01 rna ? GO:0000054 ... P39938 24200810
    295531 4v8y:A0 (4.3) BS02 ZN ? GO:0000054 ... P39938 24200810
    295532 4v8y:A1 (4.3) BS01 rna ? GO:0000028 ... P35997 24200810
    295533 4v8y:A2 (4.3) BS01 rna ? GO:0000028 ... Q3E7X9 24200810
    295534 4v8y:A3 (4.3) BS01 rna ? GO:0002181 ... P41057 24200810
    295535 4v8y:A3 (4.3) BS02 ZN ? GO:0002181 ... P41057 24200810
    295536 4v8y:A3 (4.3) BS03 OHX ? GO:0002181 ... P41057 24200810
    295537 4v8y:A3 (4.3) BS04 MG ? GO:0002181 ... P41057 24200810
    295538 4v8y:A3 (4.3) BS05 MG ? GO:0002181 ... P41057 24200810
    295539 4v8y:A4 (4.3) BS01 rna ? GO:0002181 ... P0CX33 24200810
    295540 4v8y:A5 (4.3) BS01 rna ? GO:0000028 ... P05759 24200810
    295541 4v8y:A5 (4.3) BS02 ZN ? GO:0000028 ... P05759 24200810
    295542 4v8y:A6 (4.3) BS01 rna ? GO:0001965 ... P38011 24200810
    295543 4v8y:A6 (4.3) BS02 OHX ? GO:0001965 ... P38011 24200810
    295544 4v8y:A7 (4.3) BS01 rna ? GO:0000723 ... P39015 24200810
    295545 4v8y:A7 (4.3) BS02 rna ? GO:0000723 ... P39015 24200810
    295546 4v8y:A7 (4.3) BS03 rna ? GO:0000723 ... P39015 24200810
    295547 4v8y:AA (4.3) BS01 rna ? GO:0000028 ... P32905 24200810
    295548 4v8y:AB (4.3) BS01 rna ? GO:0000462 ... P33442 24200810
    295549 4v8y:AB (4.3) BS02 rna ? GO:0000462 ... P33442 24200810
    295550 4v8y:AB (4.3) BS03 OHX ? GO:0000462 ... P33442 24200810
    295551 4v8y:AC (4.3) BS01 rna ? GO:0000054 ... P25443 24200810
    295552 4v8y:AC (4.3) BS02 OHX ? GO:0000054 ... P25443 24200810
    295553 4v8y:AD (4.3) BS01 rna ? GO:0000054 ... P05750 24200810
    295554 4v8y:AE (4.3) BS01 rna ? GO:0002181 ... P0CX35 24200810
    295555 4v8y:AF (4.3) BS01 rna ? GO:0000028 ... P26783 24200810
    295556 4v8y:AG (4.3) BS01 rna ? GO:0000462 ... P0CX37 24200810
    295557 4v8y:AH (4.3) BS01 rna ? GO:0002181 ... P26786 24200810
    295558 4v8y:AI (4.3) BS01 rna ? GO:0000462 ... P0CX39 24200810
    295559 4v8y:AI (4.3) BS02 rna ? GO:0000462 ... P0CX39 24200810
    295560 4v8y:AI (4.3) BS03 OHX ? GO:0000462 ... P0CX39 24200810
    295561 4v8y:AJ (4.3) BS01 rna ? GO:0000462 ... O13516 24200810
    295562 4v8y:AK (4.3) BS01 rna ? GO:0000054 ... Q08745 24200810
    295563 4v8y:AL (4.3) BS01 rna ? GO:0000028 ... P0CX47 24200810
    295564 4v8y:AL (4.3) BS02 OHX ? GO:0000028 ... P0CX47 24200810
    295565 4v8y:AL (4.3) BS03 MG ? GO:0000028 ... P0CX47 24200810
    295566 4v8y:AM (4.3) BS01 rna ? GO:0000028 ... P48589 24200810
    295567 4v8y:AN (4.3) BS01 rna ? GO:0000462 ... P05756 24200810
    295568 4v8y:AN (4.3) BS02 rna ? GO:0000462 ... P05756 24200810
    295569 4v8y:AN (4.3) BS03 OHX ? GO:0000462 ... P05756 24200810
    295570 4v8y:AO (4.3) BS01 rna ? GO:0000028 ... P06367 24200810
    295571 4v8y:AP (4.3) BS01 rna ? GO:0000028 ... Q01855 24200810
    295572 4v8y:AP (4.3) BS02 OHX ? GO:0000028 ... Q01855 24200810
    295573 4v8y:AQ (4.3) BS01 rna ? GO:0000462 ... P0CX51 24200810
    295574 4v8y:AR (4.3) BS01 rna ? GO:0000028 ... P02407 24200810
    295575 4v8y:AS (4.3) BS01 rna ? GO:0000054 ... P0CX55 24200810
    295576 4v8y:AS (4.3) BS02 MG ? GO:0000054 ... P0CX55 24200810
    295577 4v8y:AT (4.3) BS01 rna ? GO:0000028 ... P07280 24200810
    295578 4v8y:AU (4.3) BS01 rna ? GO:0000462 ... P38701 24200810
    295579 4v8y:AV (4.3) BS01 rna ? GO:0000447 ... P0C0V8 24200810
    295580 4v8y:AW (4.3) BS01 rna ? GO:0002181 ... P0C0W1 24200810
    295581 4v8y:AX (4.3) BS01 rna ? GO:0000462 ... P0CX29 24200810
    295582 4v8y:AY (4.3) BS01 rna ? GO:0000462 ... P0CX31 24200810
    295583 4v8y:AZ (4.3) BS01 rna ? GO:0002181 ... Q3E792 24200810
    295584 4v8y:BA (4.3) BS01 rna ? GO:0002181 ... P0CX46 24200810
    295585 4v8y:BA (4.3) BS02 rna ? GO:0002181 ... P0CX46 24200810
    295586 4v8y:BB (4.3) BS01 rna ? GO:0000027 ... P14126 24200810
    295587 4v8y:BC (4.3) BS01 rna ? GO:0002181 ... P10664 24200810
    295588 4v8y:BC (4.3) BS02 rna ? GO:0002181 ... P10664 24200810
    295589 4v8y:BD (4.3) BS01 rna ? GO:0000027 ... P26321 24200810
    295590 4v8y:BD (4.3) BS02 rna ? GO:0000027 ... P26321 24200810
    295591 4v8y:BE (4.3) BS01 rna ? GO:0000027 ... Q02326 24200810
    295592 4v8y:BF (4.3) BS01 rna ? GO:0000463 ... P05737 24200810
    295593 4v8y:BF (4.3) BS02 rna ? GO:0000463 ... P05737 24200810
    295594 4v8y:BG (4.3) BS01 rna ? GO:0000470 ... P17076 24200810
    295595 4v8y:BG (4.3) BS02 rna ? GO:0000470 ... P17076 24200810
    295596 4v8y:BH (4.3) BS01 rna ? GO:0002181 ... P05738 24200810
    295597 4v8y:BI (4.3) BS01 rna ? GO:0000027 ... P41805 24200810
    295598 4v8y:BI (4.3) BS02 rna ? GO:0000027 ... P41805 24200810
    295599 4v8y:BJ (4.3) BS01 rna ? GO:0000027 ... P0C0W9 24200810
    295600 4v8y:BJ (4.3) BS02 rna ? GO:0000027 ... P0C0W9 24200810

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).