SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    295601 4v8y:BK (4.3) BS01 rna N/A N/A N/A 24200810
    295602 4v8y:BL (4.3) BS01 rna ? GO:0002181 ... Q12690 24200810
    295603 4v8y:BL (4.3) BS02 rna ? GO:0002181 ... Q12690 24200810
    295604 4v8y:BM (4.3) BS01 rna ? GO:0000027 ... P38754 24200810
    295605 4v8y:BN (4.3) BS01 rna ? GO:0002181 ... P05748 24200810
    295606 4v8y:BN (4.3) BS02 rna ? GO:0002181 ... P05748 24200810
    295607 4v8y:BO (4.3) BS01 rna ? GO:0000470 ... P26784 24200810
    295608 4v8y:BP (4.3) BS01 rna ? GO:0000448 ... P05740 24200810
    295609 4v8y:BP (4.3) BS02 rna ? GO:0000448 ... P05740 24200810
    295610 4v8y:BQ (4.3) BS01 rna ? GO:0002181 ... P0CX49 24200810
    295611 4v8y:BR (4.3) BS01 rna ? GO:0002181 ... P0CX83 24200810
    295612 4v8y:BR (4.3) BS02 rna ? GO:0002181 ... P0CX83 24200810
    295613 4v8y:BR (4.3) BS03 OHX ? GO:0002181 ... P0CX83 24200810
    295614 4v8y:BS (4.3) BS01 rna ? GO:0002181 ... P0CX24 24200810
    295615 4v8y:BS (4.3) BS02 rna ? GO:0002181 ... P0CX24 24200810
    295616 4v8y:BT (4.3) BS01 rna ? GO:0002181 ... Q02753 24200810
    295617 4v8y:BU (4.3) BS01 rna ? GO:0002181 ... P05749 24200810
    295618 4v8y:BV (4.3) BS01 rna ? GO:0002181 ... P0CX41 24200810
    295619 4v8y:BV (4.3) BS02 rna ? GO:0002181 ... P0CX41 24200810
    295620 4v8y:BW (4.3) BS01 rna ? GO:0002181 ... P04449 24200810
    295621 4v8y:BX (4.3) BS01 rna ? GO:0000027 ... P04456 24200810
    295622 4v8y:BX (4.3) BS02 rna ? GO:0000027 ... P04456 24200810
    295623 4v8y:BY (4.3) BS01 rna ? GO:0002181 ... P05743 24200810
    295624 4v8y:BY (4.3) BS02 rna ? GO:0002181 ... P05743 24200810
    295625 4v8y:BZ (4.3) BS01 rna ? GO:0002181 ... P0C2H6 24200810
    295626 4v8y:Ba (4.3) BS01 rna ? GO:0002181 ... P02406 24200810
    295627 4v8y:Bb (4.3) BS01 rna ? GO:0002181 ... P05747 24200810
    295628 4v8y:Bc (4.3) BS01 rna ? GO:0002181 ... P14120 24200810
    295629 4v8y:Bd (4.3) BS01 rna ? GO:0002181 ... P0C2H8 24200810
    295630 4v8y:Be (4.3) BS01 rna ? GO:0002181 ... P38061 24200810
    295631 4v8y:Bf (4.3) BS01 rna ? GO:0000027 ... P05744 24200810
    295632 4v8y:Bg (4.3) BS01 rna ? GO:0002181 ... P87262 24200810
    295633 4v8y:Bh (4.3) BS01 rna ? GO:0000463 ... P0CX85 24200810
    295634 4v8y:Bh (4.3) BS02 rna ? GO:0000463 ... P0CX85 24200810
    295635 4v8y:Bi (4.3) BS01 rna ? GO:0002181 ... P05745 24200810
    295636 4v8y:Bj (4.3) BS01 rna ? GO:0000448 ... P49166 24200810
    295637 4v8y:Bj (4.3) BS02 rna ? GO:0000448 ... P49166 24200810
    295638 4v8y:Bj (4.3) BS03 ZN ? GO:0000448 ... P49166 24200810
    295639 4v8y:Bk (4.3) BS01 rna ? GO:0002181 ... P49167 24200810
    295640 4v8y:Bl (4.3) BS01 rna ? GO:0002181 ... P04650 24200810
    295641 4v8y:Bl (4.3) BS02 rna ? GO:0002181 ... P04650 24200810
    295642 4v8y:Bm (4.3) BS01 rna ? GO:0000027 ... P0CH08 24200810
    295643 4v8y:Bm (4.3) BS02 ZN ? GO:0000027 ... P0CH08 24200810
    295644 4v8y:Bo (4.3) BS01 rna ? GO:0002181 ... P0CX27 24200810
    295645 4v8y:Bo (4.3) BS02 rna ? GO:0002181 ... P0CX27 24200810
    295646 4v8y:Bq (4.3) BS01 rna ? GO:0000027 ... P05317 24200810
    295647 4v8y:By (4.3) BS01 rna N/A GO:0003723 ... N/A 24200810
    295648 4v8y:By (4.3) BS02 rna N/A GO:0003723 ... N/A 24200810
    295649 4v8y:CL (4.3) BS01 rna N/A GO:0003723 ... N/A 24200810
    295650 4v8y:CP (4.3) BS01 rna 3.6.5.3 GO:0003924 ... P39730 24200810
    295651 4v8y:CP (4.3) BS02 rna 3.6.5.3 GO:0003924 ... P39730 24200810
    295652 4v8z:A0 (6.6) BS01 rna ? GO:0000054 ... P39938 24200810
    295653 4v8z:A0 (6.6) BS02 ZN ? GO:0000054 ... P39938 24200810
    295654 4v8z:A1 (6.6) BS01 rna ? GO:0000028 ... P35997 24200810
    295655 4v8z:A2 (6.6) BS01 rna ? GO:0000028 ... Q3E7X9 24200810
    295656 4v8z:A3 (6.6) BS01 rna ? GO:0002181 ... P41057 24200810
    295657 4v8z:A3 (6.6) BS02 ZN ? GO:0002181 ... P41057 24200810
    295658 4v8z:A3 (6.6) BS03 OHX ? GO:0002181 ... P41057 24200810
    295659 4v8z:A3 (6.6) BS04 MG ? GO:0002181 ... P41057 24200810
    295660 4v8z:A3 (6.6) BS05 MG ? GO:0002181 ... P41057 24200810
    295661 4v8z:A4 (6.6) BS01 rna ? GO:0002181 ... P0CX33 24200810
    295662 4v8z:A5 (6.6) BS01 rna ? GO:0000028 ... P05759 24200810
    295663 4v8z:A5 (6.6) BS02 ZN ? GO:0000028 ... P05759 24200810
    295664 4v8z:A6 (6.6) BS01 rna ? GO:0001965 ... P38011 24200810
    295665 4v8z:A6 (6.6) BS02 OHX ? GO:0001965 ... P38011 24200810
    295666 4v8z:A7 (6.6) BS01 rna ? GO:0000723 ... P39015 24200810
    295667 4v8z:A7 (6.6) BS02 rna ? GO:0000723 ... P39015 24200810
    295668 4v8z:A7 (6.6) BS03 rna ? GO:0000723 ... P39015 24200810
    295669 4v8z:A7 (6.6) BS04 rna ? GO:0000723 ... P39015 24200810
    295670 4v8z:AA (6.6) BS01 rna ? GO:0000028 ... P32905 24200810
    295671 4v8z:AB (6.6) BS01 rna ? GO:0000462 ... P33442 24200810
    295672 4v8z:AB (6.6) BS02 rna ? GO:0000462 ... P33442 24200810
    295673 4v8z:AB (6.6) BS03 OHX ? GO:0000462 ... P33442 24200810
    295674 4v8z:AC (6.6) BS01 rna ? GO:0000054 ... P25443 24200810
    295675 4v8z:AC (6.6) BS02 OHX ? GO:0000054 ... P25443 24200810
    295676 4v8z:AD (6.6) BS01 rna ? GO:0000054 ... P05750 24200810
    295677 4v8z:AE (6.6) BS01 rna ? GO:0002181 ... P0CX35 24200810
    295678 4v8z:AF (6.6) BS01 rna ? GO:0000028 ... P26783 24200810
    295679 4v8z:AG (6.6) BS01 rna ? GO:0000462 ... P0CX37 24200810
    295680 4v8z:AH (6.6) BS01 rna ? GO:0002181 ... P26786 24200810
    295681 4v8z:AI (6.6) BS01 rna ? GO:0000462 ... P0CX39 24200810
    295682 4v8z:AI (6.6) BS02 rna ? GO:0000462 ... P0CX39 24200810
    295683 4v8z:AI (6.6) BS03 OHX ? GO:0000462 ... P0CX39 24200810
    295684 4v8z:AJ (6.6) BS01 rna ? GO:0000462 ... O13516 24200810
    295685 4v8z:AK (6.6) BS01 rna ? GO:0000054 ... Q08745 24200810
    295686 4v8z:AL (6.6) BS01 rna ? GO:0000028 ... P0CX47 24200810
    295687 4v8z:AL (6.6) BS02 OHX ? GO:0000028 ... P0CX47 24200810
    295688 4v8z:AL (6.6) BS03 MG ? GO:0000028 ... P0CX47 24200810
    295689 4v8z:AM (6.6) BS01 rna ? GO:0000028 ... P48589 24200810
    295690 4v8z:AN (6.6) BS01 rna ? GO:0000462 ... P05756 24200810
    295691 4v8z:AN (6.6) BS02 rna ? GO:0000462 ... P05756 24200810
    295692 4v8z:AN (6.6) BS03 OHX ? GO:0000462 ... P05756 24200810
    295693 4v8z:AO (6.6) BS01 rna ? GO:0000028 ... P06367 24200810
    295694 4v8z:AP (6.6) BS01 rna ? GO:0000028 ... Q01855 24200810
    295695 4v8z:AP (6.6) BS02 rna ? GO:0000028 ... Q01855 24200810
    295696 4v8z:AP (6.6) BS03 OHX ? GO:0000028 ... Q01855 24200810
    295697 4v8z:AQ (6.6) BS01 rna ? GO:0000462 ... P0CX51 24200810
    295698 4v8z:AR (6.6) BS01 rna ? GO:0000028 ... P02407 24200810
    295699 4v8z:AS (6.6) BS01 rna ? GO:0000054 ... P0CX55 24200810
    295700 4v8z:AS (6.6) BS02 MG ? GO:0000054 ... P0CX55 24200810
    295701 4v8z:AT (6.6) BS01 rna ? GO:0000028 ... P07280 24200810
    295702 4v8z:AU (6.6) BS01 rna ? GO:0000462 ... P38701 24200810
    295703 4v8z:AV (6.6) BS01 rna ? GO:0000447 ... P0C0V8 24200810
    295704 4v8z:AW (6.6) BS01 rna ? GO:0002181 ... P0C0W1 24200810
    295705 4v8z:AX (6.6) BS01 rna ? GO:0000462 ... P0CX29 24200810
    295706 4v8z:AY (6.6) BS01 rna ? GO:0000462 ... P0CX31 24200810
    295707 4v8z:AZ (6.6) BS01 rna ? GO:0002181 ... Q3E792 24200810
    295708 4v8z:BA (6.6) BS01 rna ? GO:0002181 ... P0CX46 24200810
    295709 4v8z:BA (6.6) BS02 rna ? GO:0002181 ... P0CX46 24200810
    295710 4v8z:BB (6.6) BS01 rna ? GO:0000027 ... P14126 24200810
    295711 4v8z:BC (6.6) BS01 rna ? GO:0002181 ... P10664 24200810
    295712 4v8z:BC (6.6) BS02 rna ? GO:0002181 ... P10664 24200810
    295713 4v8z:BD (6.6) BS01 rna ? GO:0000027 ... P26321 24200810
    295714 4v8z:BD (6.6) BS02 rna ? GO:0000027 ... P26321 24200810
    295715 4v8z:BD (6.6) BS03 MG ? GO:0000027 ... P26321 24200810
    295716 4v8z:BD (6.6) BS04 MG ? GO:0000027 ... P26321 24200810
    295717 4v8z:BE (6.6) BS01 rna ? GO:0000027 ... Q02326 24200810
    295718 4v8z:BF (6.6) BS01 rna ? GO:0000463 ... P05737 24200810
    295719 4v8z:BF (6.6) BS02 rna ? GO:0000463 ... P05737 24200810
    295720 4v8z:BF (6.6) BS03 MG ? GO:0000463 ... P05737 24200810
    295721 4v8z:BG (6.6) BS01 rna ? GO:0000470 ... P17076 24200810
    295722 4v8z:BG (6.6) BS02 rna ? GO:0000470 ... P17076 24200810
    295723 4v8z:BH (6.6) BS01 rna ? GO:0002181 ... P05738 24200810
    295724 4v8z:BI (6.6) BS01 rna ? GO:0000027 ... P41805 24200810
    295725 4v8z:BI (6.6) BS02 rna ? GO:0000027 ... P41805 24200810
    295726 4v8z:BJ (6.6) BS01 rna ? GO:0000027 ... P0C0W9 24200810
    295727 4v8z:BJ (6.6) BS02 rna ? GO:0000027 ... P0C0W9 24200810
    295728 4v8z:BK (6.6) BS01 rna N/A N/A N/A 24200810
    295729 4v8z:BL (6.6) BS01 rna ? GO:0002181 ... Q12690 24200810
    295730 4v8z:BL (6.6) BS02 rna ? GO:0002181 ... Q12690 24200810
    295731 4v8z:BM (6.6) BS01 rna ? GO:0000027 ... P38754 24200810
    295732 4v8z:BN (6.6) BS01 rna ? GO:0002181 ... P05748 24200810
    295733 4v8z:BN (6.6) BS02 rna ? GO:0002181 ... P05748 24200810
    295734 4v8z:BO (6.6) BS01 rna ? GO:0000470 ... P26784 24200810
    295735 4v8z:BP (6.6) BS01 rna ? GO:0000448 ... P05740 24200810
    295736 4v8z:BP (6.6) BS02 rna ? GO:0000448 ... P05740 24200810
    295737 4v8z:BQ (6.6) BS01 rna ? GO:0002181 ... P0CX49 24200810
    295738 4v8z:BR (6.6) BS01 rna ? GO:0002181 ... P0CX83 24200810
    295739 4v8z:BR (6.6) BS02 rna ? GO:0002181 ... P0CX83 24200810
    295740 4v8z:BR (6.6) BS03 OHX ? GO:0002181 ... P0CX83 24200810
    295741 4v8z:BS (6.6) BS01 rna ? GO:0002181 ... P0CX24 24200810
    295742 4v8z:BS (6.6) BS02 rna ? GO:0002181 ... P0CX24 24200810
    295743 4v8z:BS (6.6) BS03 MG ? GO:0002181 ... P0CX24 24200810
    295744 4v8z:BT (6.6) BS01 rna ? GO:0002181 ... Q02753 24200810
    295745 4v8z:BU (6.6) BS01 rna ? GO:0002181 ... P05749 24200810
    295746 4v8z:BV (6.6) BS01 rna ? GO:0002181 ... P0CX41 24200810
    295747 4v8z:BV (6.6) BS02 rna ? GO:0002181 ... P0CX41 24200810
    295748 4v8z:BW (6.6) BS01 rna ? GO:0002181 ... P04449 24200810
    295749 4v8z:BX (6.6) BS01 rna ? GO:0000027 ... P04456 24200810
    295750 4v8z:BX (6.6) BS02 rna ? GO:0000027 ... P04456 24200810
    295751 4v8z:BY (6.6) BS01 rna ? GO:0002181 ... P05743 24200810
    295752 4v8z:BY (6.6) BS02 rna ? GO:0002181 ... P05743 24200810
    295753 4v8z:BZ (6.6) BS01 rna ? GO:0002181 ... P0C2H6 24200810
    295754 4v8z:Ba (6.6) BS01 rna ? GO:0002181 ... P02406 24200810
    295755 4v8z:Bb (6.6) BS01 rna ? GO:0002181 ... P05747 24200810
    295756 4v8z:Bc (6.6) BS01 rna ? GO:0002181 ... P14120 24200810
    295757 4v8z:Bd (6.6) BS01 rna ? GO:0002181 ... P0C2H8 24200810
    295758 4v8z:Be (6.6) BS01 rna ? GO:0002181 ... P38061 24200810
    295759 4v8z:Bf (6.6) BS01 rna ? GO:0000027 ... P05744 24200810
    295760 4v8z:Bg (6.6) BS01 rna ? GO:0002181 ... P87262 24200810
    295761 4v8z:Bh (6.6) BS01 rna ? GO:0000463 ... P0CX85 24200810
    295762 4v8z:Bh (6.6) BS02 rna ? GO:0000463 ... P0CX85 24200810
    295763 4v8z:Bi (6.6) BS01 rna ? GO:0002181 ... P05745 24200810
    295764 4v8z:Bj (6.6) BS01 rna ? GO:0000448 ... P49166 24200810
    295765 4v8z:Bj (6.6) BS02 rna ? GO:0000448 ... P49166 24200810
    295766 4v8z:Bj (6.6) BS03 ZN ? GO:0000448 ... P49166 24200810
    295767 4v8z:Bk (6.6) BS01 rna ? GO:0002181 ... P49167 24200810
    295768 4v8z:Bl (6.6) BS01 rna ? GO:0002181 ... P04650 24200810
    295769 4v8z:Bl (6.6) BS02 rna ? GO:0002181 ... P04650 24200810
    295770 4v8z:Bm (6.6) BS01 rna ? GO:0000027 ... P0CH08 24200810
    295771 4v8z:Bm (6.6) BS02 ZN ? GO:0000027 ... P0CH08 24200810
    295772 4v8z:Bo (6.6) BS01 rna ? GO:0002181 ... P0CX27 24200810
    295773 4v8z:Bo (6.6) BS02 rna ? GO:0002181 ... P0CX27 24200810
    295774 4v8z:Bq (6.6) BS01 rna ? GO:0000027 ... P05317 24200810
    295775 4v8z:CV (6.6) BS01 rna ?
    3.6.5.3
    GO:0003743 ... O26359
    P39730
    24200810
    295776 4v8z:CV (6.6) BS02 rna ?
    3.6.5.3
    GO:0003743 ... O26359
    P39730
    24200810
    295777 4v8z:CV (6.6) BS03 rna ?
    3.6.5.3
    GO:0003743 ... O26359
    P39730
    24200810
    295778 4v90:AB (2.95) BS01 rna ? GO:0003735 ... P80371 23912278
    295779 4v90:AC (2.95) BS01 rna ? GO:0003676 ... P80372 23912278
    295780 4v90:AD (2.95) BS01 rna ? GO:0003723 ... P80373 23912278
    295781 4v90:AE (2.95) BS01 rna ? GO:0003723 ... Q5SHQ5 23912278
    295782 4v90:AF (2.95) BS01 rna ? GO:0003735 ... Q5SLP8 23912278
    295783 4v90:AG (2.95) BS01 rna ? GO:0000049 ... P17291 23912278
    295784 4v90:AG (2.95) BS02 rna ? GO:0000049 ... P17291 23912278
    295785 4v90:AG (2.95) BS03 rna ? GO:0000049 ... P17291 23912278
    295786 4v90:AH (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    295787 4v90:AI (2.95) BS01 rna ? GO:0000049 ... P80374 23912278
    295788 4v90:AJ (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 23912278
    295789 4v90:AK (2.95) BS01 rna ? GO:0003735 ... P80376 23912278
    295790 4v90:AL (2.95) BS01 rna ? GO:0000049 ... Q5SHN3 23912278
    295791 4v90:AM (2.95) BS01 rna ? GO:0000049 ... P80377 23912278
    295792 4v90:AN (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    295793 4v90:AN (2.95) BS02 ZN N/A GO:0003735 ... N/A 23912278
    295794 4v90:AO (2.95) BS01 rna ? GO:0003735 ... Q5SJ76 23912278
    295795 4v90:AO (2.95) BS02 rna ? GO:0003735 ... Q5SJ76 23912278
    295796 4v90:AP (2.95) BS01 rna ? GO:0003735 ... Q5SJH3 23912278
    295797 4v90:AQ (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    295798 4v90:AR (2.95) BS01 rna ? GO:0003735 ... Q5SLQ0 23912278
    295799 4v90:AS (2.95) BS01 rna ? GO:0000028 ... Q5SHP2 23912278
    295800 4v90:AT (2.95) BS01 rna ? GO:0003723 ... P80380 23912278

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).