SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    295801 4v90:AY (2.95) BS01 rna ? GO:0003746 ... Q5SHN5 23912278
    295802 4v90:AY (2.95) BS02 rna ? GO:0003746 ... Q5SHN5 23912278
    295803 4v90:AY (2.95) BS03 MG ? GO:0003746 ... Q5SHN5 23912278
    295804 4v90:B0 (2.95) BS01 rna ? GO:0003735 ... P60493 23912278
    295805 4v90:B0 (2.95) BS02 rna ? GO:0003735 ... P60493 23912278
    295806 4v90:B1 (2.95) BS01 rna ? GO:0003735 ... P60494 23912278
    295807 4v90:B2 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 23912278
    295808 4v90:B3 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 23912278
    295809 4v90:B3 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 23912278
    295810 4v90:B4 (2.95) BS01 rna ? GO:0003735 ... Q5SJE1 23912278
    295811 4v90:B5 (2.95) BS01 rna ? GO:0003735 ... P80339 23912278
    295812 4v90:B6 (2.95) BS01 rna ? GO:0000049 ... P35871 23912278
    295813 4v90:B7 (2.95) BS01 rna ? GO:0003735 ... P80340 23912278
    295814 4v90:B8 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 23912278
    295815 4v90:B9 (2.95) BS01 rna ? GO:0003735 ... Q5SHR2 23912278
    295816 4v90:B9 (2.95) BS02 ZN ? GO:0003735 ... Q5SHR2 23912278
    295817 4v90:BC (2.95) BS01 rna ? GO:0000049 ... Q5SLP7 23912278
    295818 4v90:BC (2.95) BS02 rna ? GO:0000049 ... Q5SLP7 23912278
    295819 4v90:BD (2.95) BS01 rna ? GO:0002181 ... P60405 23912278
    295820 4v90:BD (2.95) BS02 rna ? GO:0002181 ... P60405 23912278
    295821 4v90:BD (2.95) BS03 MG ? GO:0002181 ... P60405 23912278
    295822 4v90:BE (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 23912278
    295823 4v90:BF (2.95) BS01 rna ? GO:0003735 ... Q5SHN9 23912278
    295824 4v90:BG (2.95) BS01 rna ? GO:0000049 ... Q5SHQ0 23912278
    295825 4v90:BG (2.95) BS02 rna ? GO:0000049 ... Q5SHQ0 23912278
    295826 4v90:BH (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    295827 4v90:BJ (2.95) BS01 rna N/A N/A N/A 23912278
    295828 4v90:BK (2.95) BS01 rna N/A N/A N/A 23912278
    295829 4v90:BN (2.95) BS01 rna ? GO:0003729 ... P60488 23912278
    295830 4v90:BO (2.95) BS01 rna ? GO:0003735 ... Q5SHP8 23912278
    295831 4v90:BO (2.95) BS02 rna ? GO:0003735 ... Q5SHP8 23912278
    295832 4v90:BP (2.95) BS01 rna ? GO:0003735 ... Q5SHQ7 23912278
    295833 4v90:BQ (2.95) BS01 rna ? GO:0000049 ... P60489 23912278
    295834 4v90:BQ (2.95) BS02 rna ? GO:0000049 ... P60489 23912278
    295835 4v90:BR (2.95) BS01 rna ? GO:0003735 ... Q9Z9H5 23912278
    295836 4v90:BS (2.95) BS01 rna ? GO:0003735 ... Q5SHQ4 23912278
    295837 4v90:BS (2.95) BS02 rna ? GO:0003735 ... Q5SHQ4 23912278
    295838 4v90:BT (2.95) BS01 rna ? GO:0003735 ... P60490 23912278
    295839 4v90:BT (2.95) BS02 rna ? GO:0003735 ... P60490 23912278
    295840 4v90:BU (2.95) BS01 rna ? GO:0000027 ... P60491 23912278
    295841 4v90:BV (2.95) BS01 rna ? GO:0003723 ... P60492 23912278
    295842 4v90:BW (2.95) BS01 rna ? GO:0003735 ... Q5SHP3 23912278
    295843 4v90:BX (2.95) BS01 rna ? GO:0003735 ... Q5SHP0 23912278
    295844 4v90:BY (2.95) BS01 rna ? GO:0003723 ... Q5SHP9 23912278
    295845 4v90:BZ (2.95) BS01 rna ? GO:0003723 ... Q5SHZ1 23912278
    295846 4v90:BZ (2.95) BS02 rna ? GO:0003723 ... Q5SHZ1 23912278
    295847 4v90:BZ (2.95) BS03 MG ? GO:0003723 ... Q5SHZ1 23912278
    295848 4v91:A (3.7) BS01 rna N/A N/A N/A 24792965
    295849 4v91:B (3.7) BS01 rna N/A N/A N/A 24792965
    295850 4v91:C (3.7) BS01 rna N/A N/A N/A 24792965
    295851 4v91:C (3.7) BS02 rna N/A N/A N/A 24792965
    295852 4v91:D (3.7) BS01 rna N/A N/A N/A 24792965
    295853 4v91:D (3.7) BS02 rna N/A N/A N/A 24792965
    295854 4v91:E (3.7) BS01 rna N/A N/A N/A 24792965
    295855 4v91:F (3.7) BS01 rna N/A N/A N/A 24792965
    295856 4v91:F (3.7) BS02 rna N/A N/A N/A 24792965
    295857 4v91:G (3.7) BS01 rna N/A N/A N/A 24792965
    295858 4v91:G (3.7) BS02 rna N/A N/A N/A 24792965
    295859 4v91:H (3.7) BS01 rna N/A N/A N/A 24792965
    295860 4v91:I (3.7) BS01 rna N/A N/A N/A 24792965
    295861 4v91:I (3.7) BS02 rna N/A N/A N/A 24792965
    295862 4v91:J (3.7) BS01 rna N/A N/A N/A 24792965
    295863 4v91:J (3.7) BS02 rna N/A N/A N/A 24792965
    295864 4v91:L (3.7) BS01 rna N/A N/A N/A 24792965
    295865 4v91:L (3.7) BS02 rna N/A N/A N/A 24792965
    295866 4v91:M (3.7) BS01 rna N/A N/A N/A 24792965
    295867 4v91:N (3.7) BS01 rna N/A N/A N/A 24792965
    295868 4v91:N (3.7) BS02 rna N/A N/A N/A 24792965
    295869 4v91:O (3.7) BS01 rna N/A N/A N/A 24792965
    295870 4v91:P (3.7) BS01 rna N/A N/A N/A 24792965
    295871 4v91:P (3.7) BS02 rna N/A N/A N/A 24792965
    295872 4v91:Q (3.7) BS01 rna N/A N/A N/A 24792965
    295873 4v91:R (3.7) BS01 rna N/A N/A N/A 24792965
    295874 4v91:S (3.7) BS01 rna N/A N/A N/A 24792965
    295875 4v91:S (3.7) BS02 rna N/A N/A N/A 24792965
    295876 4v91:T (3.7) BS01 rna N/A N/A N/A 24792965
    295877 4v91:T (3.7) BS02 rna N/A N/A N/A 24792965
    295878 4v91:U (3.7) BS01 rna N/A N/A N/A 24792965
    295879 4v91:V (3.7) BS01 rna N/A N/A N/A 24792965
    295880 4v91:W (3.7) BS01 rna N/A N/A N/A 24792965
    295881 4v91:X (3.7) BS01 rna N/A N/A N/A 24792965
    295882 4v91:X (3.7) BS02 rna N/A N/A N/A 24792965
    295883 4v91:Y (3.7) BS01 rna N/A N/A N/A 24792965
    295884 4v91:Y (3.7) BS02 rna N/A N/A N/A 24792965
    295885 4v91:Z (3.7) BS01 rna N/A N/A N/A 24792965
    295886 4v91:a (3.7) BS01 rna N/A N/A N/A 24792965
    295887 4v91:b (3.7) BS01 rna N/A N/A N/A 24792965
    295888 4v91:c (3.7) BS01 rna N/A N/A N/A 24792965
    295889 4v91:d (3.7) BS01 rna N/A N/A N/A 24792965
    295890 4v91:e (3.7) BS01 rna N/A N/A N/A 24792965
    295891 4v91:f (3.7) BS01 rna N/A N/A N/A 24792965
    295892 4v91:g (3.7) BS01 rna N/A N/A N/A 24792965
    295893 4v91:h (3.7) BS01 rna N/A N/A N/A 24792965
    295894 4v91:h (3.7) BS02 rna N/A N/A N/A 24792965
    295895 4v91:i (3.7) BS01 rna N/A N/A N/A 24792965
    295896 4v91:j (3.7) BS01 rna N/A N/A N/A 24792965
    295897 4v91:j (3.7) BS02 rna N/A N/A N/A 24792965
    295898 4v91:k (3.7) BS01 rna N/A N/A N/A 24792965
    295899 4v91:l (3.7) BS01 rna N/A N/A N/A 24792965
    295900 4v91:l (3.7) BS02 rna N/A N/A N/A 24792965
    295901 4v91:m (3.7) BS01 rna N/A N/A N/A 24792965
    295902 4v91:o (3.7) BS01 rna N/A N/A N/A 24792965
    295903 4v91:p (3.7) BS01 rna N/A N/A N/A 24792965
    295904 4v91:t (3.7) BS01 rna N/A N/A N/A 24792965
    295905 4v92:BA (3.7) BS01 rna N/A N/A N/A 24792965
    295906 4v92:BB (3.7) BS01 rna N/A N/A N/A 24792965
    295907 4v92:BC (3.7) BS01 rna N/A N/A N/A 24792965
    295908 4v92:BD (3.7) BS01 rna N/A N/A N/A 24792965
    295909 4v92:BD (3.7) BS02 rna N/A N/A N/A 24792965
    295910 4v92:BE (3.7) BS01 rna N/A N/A N/A 24792965
    295911 4v92:BF (3.7) BS01 rna N/A N/A N/A 24792965
    295912 4v92:BF (3.7) BS02 rna N/A N/A N/A 24792965
    295913 4v92:BG (3.7) BS01 rna N/A N/A N/A 24792965
    295914 4v92:BH (3.7) BS01 rna N/A N/A N/A 24792965
    295915 4v92:BI (3.7) BS01 rna N/A N/A N/A 24792965
    295916 4v92:BJ (3.7) BS01 rna N/A N/A N/A 24792965
    295917 4v92:BK (3.7) BS01 rna N/A N/A N/A 24792965
    295918 4v92:BL (3.7) BS01 rna N/A N/A N/A 24792965
    295919 4v92:BN (3.7) BS01 rna N/A N/A N/A 24792965
    295920 4v92:BO (3.7) BS01 rna N/A N/A N/A 24792965
    295921 4v92:BP (3.7) BS01 rna N/A N/A N/A 24792965
    295922 4v92:BQ (3.7) BS01 rna N/A N/A N/A 24792965
    295923 4v92:BR (3.7) BS01 rna N/A N/A N/A 24792965
    295924 4v92:BS (3.7) BS01 rna N/A N/A N/A 24792965
    295925 4v92:BT (3.7) BS01 rna N/A N/A N/A 24792965
    295926 4v92:BU (3.7) BS01 rna N/A N/A N/A 24792965
    295927 4v92:BV (3.7) BS01 rna N/A N/A N/A 24792965
    295928 4v92:BW (3.7) BS01 rna N/A N/A N/A 24792965
    295929 4v92:BX (3.7) BS01 rna N/A N/A N/A 24792965
    295930 4v92:BY (3.7) BS01 rna N/A N/A N/A 24792965
    295931 4v92:BZ (3.7) BS01 rna N/A N/A N/A 24792965
    295932 4v92:Ba (3.7) BS01 rna N/A N/A N/A 24792965
    295933 4v92:Bb (3.7) BS01 rna N/A N/A N/A 24792965
    295934 4v92:Bc (3.7) BS01 rna N/A N/A N/A 24792965
    295935 4v92:Bd (3.7) BS01 rna N/A N/A N/A 24792965
    295936 4v92:Be (3.7) BS01 rna N/A N/A N/A 24792965
    295937 4v92:Be (3.7) BS02 rna N/A N/A N/A 24792965
    295938 4v92:Bf (3.7) BS01 rna N/A N/A N/A 24792965
    295939 4v94:A (3.8) BS01 ADP ? GO:0005515 ... P12612 22503819
    295940 4v94:A (3.8) BS02 BEF ? GO:0005515 ... P12612 22503819
    295941 4v94:B (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    295942 4v94:B (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    295943 4v94:C (3.8) BS01 ADP ? GO:0005524 ... P39077 22503819
    295944 4v94:C (3.8) BS02 BEF ? GO:0005524 ... P39077 22503819
    295945 4v94:D (3.8) BS01 ADP ? GO:0005524 ... P39078 22503819
    295946 4v94:D (3.8) BS02 BEF ? GO:0005524 ... P39078 22503819
    295947 4v94:E (3.8) BS01 MG ? GO:0005524 ... P40413 22503819
    295948 4v94:E (3.8) BS02 ADP ? GO:0005524 ... P40413 22503819
    295949 4v94:E (3.8) BS03 BEF ? GO:0005524 ... P40413 22503819
    295950 4v94:F (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    295951 4v94:F (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    295952 4v94:F (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    295953 4v94:G (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    295954 4v94:G (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    295955 4v94:H (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    295956 4v94:H (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    295957 4v94:I (3.8) BS01 MG ? GO:0005515 ... P12612 22503819
    295958 4v94:I (3.8) BS02 ADP ? GO:0005515 ... P12612 22503819
    295959 4v94:I (3.8) BS03 BEF ? GO:0005515 ... P12612 22503819
    295960 4v94:J (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    295961 4v94:J (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    295962 4v94:K (3.8) BS01 ADP ? GO:0005524 ... P39077 22503819
    295963 4v94:K (3.8) BS02 BEF ? GO:0005524 ... P39077 22503819
    295964 4v94:L (3.8) BS01 MG ? GO:0005524 ... P39078 22503819
    295965 4v94:L (3.8) BS02 ADP ? GO:0005524 ... P39078 22503819
    295966 4v94:L (3.8) BS03 BEF ? GO:0005524 ... P39078 22503819
    295967 4v94:M (3.8) BS01 ADP ? GO:0005524 ... P40413 22503819
    295968 4v94:M (3.8) BS02 BEF ? GO:0005524 ... P40413 22503819
    295969 4v94:N (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    295970 4v94:N (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    295971 4v94:N (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    295972 4v94:O (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    295973 4v94:O (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    295974 4v94:P (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    295975 4v94:P (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    295976 4v94:a (3.8) BS01 ADP ? GO:0005515 ... P12612 22503819
    295977 4v94:a (3.8) BS02 BEF ? GO:0005515 ... P12612 22503819
    295978 4v94:b (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    295979 4v94:b (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    295980 4v94:c (3.8) BS01 MG ? GO:0005524 ... P39077 22503819
    295981 4v94:c (3.8) BS02 ADP ? GO:0005524 ... P39077 22503819
    295982 4v94:c (3.8) BS03 BEF ? GO:0005524 ... P39077 22503819
    295983 4v94:d (3.8) BS01 ADP ? GO:0005524 ... P39078 22503819
    295984 4v94:d (3.8) BS02 BEF ? GO:0005524 ... P39078 22503819
    295985 4v94:e (3.8) BS01 MG ? GO:0005524 ... P40413 22503819
    295986 4v94:e (3.8) BS02 ADP ? GO:0005524 ... P40413 22503819
    295987 4v94:e (3.8) BS03 BEF ? GO:0005524 ... P40413 22503819
    295988 4v94:f (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    295989 4v94:f (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    295990 4v94:f (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    295991 4v94:g (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    295992 4v94:g (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    295993 4v94:h (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    295994 4v94:h (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    295995 4v94:i (3.8) BS01 ADP ? GO:0005515 ... P12612 22503819
    295996 4v94:i (3.8) BS02 BEF ? GO:0005515 ... P12612 22503819
    295997 4v94:j (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    295998 4v94:j (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    295999 4v94:k (3.8) BS01 ADP ? GO:0005524 ... P39077 22503819
    296000 4v94:k (3.8) BS02 BEF ? GO:0005524 ... P39077 22503819

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).