SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    297601 4v9j:CY (3.86) BS04 GNP ? GO:0003746 ... Q5SHN5 23812722
    297602 4v9j:D0 (3.86) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    297603 4v9j:D0 (3.86) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    297604 4v9j:D1 (3.86) BS01 rna ? GO:0003735 ... Q72G84 23812722
    297605 4v9j:D1 (3.86) BS02 rna ? GO:0003735 ... Q72G84 23812722
    297606 4v9j:D2 (3.86) BS01 rna ? GO:0003735 ... Q72I12 23812722
    297607 4v9j:D3 (3.86) BS01 rna ? GO:0003735 ... Q72I22 23812722
    297608 4v9j:D3 (3.86) BS02 rna ? GO:0003735 ... Q72I22 23812722
    297609 4v9j:D4 (3.86) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    297610 4v9j:D5 (3.86) BS01 rna ? GO:0003735 ... P62652 23812722
    297611 4v9j:D6 (3.86) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    297612 4v9j:D7 (3.86) BS01 rna ? GO:0003735 ... P80340 23812722
    297613 4v9j:D8 (3.86) BS01 rna ? GO:0003735 ... Q72L77 23812722
    297614 4v9j:D9 (3.86) BS01 rna ? GO:0003735 ... Q72I28 23812722
    297615 4v9j:DC (3.86) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    297616 4v9j:DC (3.86) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    297617 4v9j:DD (3.86) BS01 rna ? GO:0002181 ... Q72I07 23812722
    297618 4v9j:DE (3.86) BS01 rna ? GO:0003735 ... Q72I04 23812722
    297619 4v9j:DF (3.86) BS01 rna ? GO:0003735 ... Q72I05 23812722
    297620 4v9j:DG (3.86) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    297621 4v9j:DG (3.86) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    297622 4v9j:DH (3.86) BS01 rna ? GO:0002181 ... Q72I19 23812722
    297623 4v9j:DJ (3.86) BS01 rna N/A N/A N/A 23812722
    297624 4v9j:DK (3.86) BS01 rna ? GO:0003735 ... P62442 23812722
    297625 4v9j:DN (3.86) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    297626 4v9j:DO (3.86) BS01 rna ? GO:0003735 ... Q72I14 23812722
    297627 4v9j:DO (3.86) BS02 rna ? GO:0003735 ... Q72I14 23812722
    297628 4v9j:DP (3.86) BS01 rna ? GO:0003735 ... Q72I23 23812722
    297629 4v9j:DQ (3.86) BS01 rna ? GO:0000049 ... Q72I11 23812722
    297630 4v9j:DQ (3.86) BS02 rna ? GO:0000049 ... Q72I11 23812722
    297631 4v9j:DR (3.86) BS01 rna ? GO:0003735 ... Q72I33 23812722
    297632 4v9j:DS (3.86) BS01 rna ? GO:0003735 ... Q72I20 23812722
    297633 4v9j:DS (3.86) BS02 rna ? GO:0003735 ... Q72I20 23812722
    297634 4v9j:DT (3.86) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    297635 4v9j:DT (3.86) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    297636 4v9j:DU (3.86) BS01 rna ? GO:0000027 ... Q72L76 23812722
    297637 4v9j:DV (3.86) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    297638 4v9j:DW (3.86) BS01 rna ? GO:0003735 ... Q72I09 23812722
    297639 4v9j:DX (3.86) BS01 rna ? GO:0003735 ... Q72I06 23812722
    297640 4v9j:DY (3.86) BS01 rna ? GO:0003723 ... Q72I15 23812722
    297641 4v9j:DZ (3.86) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    297642 4v9j:DZ (3.86) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    297643 4v9k:AB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    297644 4v9k:AC (3.5) BS01 rna ? GO:0003676 ... P62663 23812722
    297645 4v9k:AC (3.5) BS02 rna ? GO:0003676 ... P62663 23812722
    297646 4v9k:AD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    297647 4v9k:AE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    297648 4v9k:AF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    297649 4v9k:AG (3.5) BS01 rna ? GO:0000049 ... P62667 23812722
    297650 4v9k:AH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    297651 4v9k:AI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    297652 4v9k:AI (3.5) BS02 rna ? GO:0000049 ... P62669 23812722
    297653 4v9k:AJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    297654 4v9k:AK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    297655 4v9k:AL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    297656 4v9k:AM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    297657 4v9k:AM (3.5) BS02 rna ? GO:0000049 ... P62655 23812722
    297658 4v9k:AN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    297659 4v9k:AO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    297660 4v9k:AO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    297661 4v9k:AP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    297662 4v9k:AQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722
    297663 4v9k:AR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    297664 4v9k:AS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    297665 4v9k:AS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    297666 4v9k:AT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    297667 4v9k:AY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    297668 4v9k:AY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    297669 4v9k:AY (3.5) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    297670 4v9k:AY (3.5) BS04 MG ? GO:0003746 ... Q5SHN5 23812722
    297671 4v9k:B0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    297672 4v9k:B0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    297673 4v9k:B1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    297674 4v9k:B1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    297675 4v9k:B2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    297676 4v9k:B3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    297677 4v9k:B3 (3.5) BS02 rna ? GO:0003735 ... Q72I22 23812722
    297678 4v9k:B4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    297679 4v9k:B5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    297680 4v9k:B6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    297681 4v9k:B7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    297682 4v9k:B8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    297683 4v9k:B9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    297684 4v9k:BC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    297685 4v9k:BC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    297686 4v9k:BD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    297687 4v9k:BD (3.5) BS02 rna ? GO:0002181 ... Q72I07 23812722
    297688 4v9k:BE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    297689 4v9k:BF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    297690 4v9k:BG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    297691 4v9k:BG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    297692 4v9k:BH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    297693 4v9k:BJ (3.5) BS01 rna N/A N/A N/A 23812722
    297694 4v9k:BK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    297695 4v9k:BN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    297696 4v9k:BO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    297697 4v9k:BO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    297698 4v9k:BP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    297699 4v9k:BQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    297700 4v9k:BQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    297701 4v9k:BR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    297702 4v9k:BS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    297703 4v9k:BS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    297704 4v9k:BT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    297705 4v9k:BT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    297706 4v9k:BU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    297707 4v9k:BV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    297708 4v9k:BW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    297709 4v9k:BX (3.5) BS01 rna ? GO:0003735 ... Q72I06 23812722
    297710 4v9k:BY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    297711 4v9k:BZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    297712 4v9k:BZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    297713 4v9k:CB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    297714 4v9k:CC (3.5) BS01 rna ? GO:0003676 ... P62663 23812722
    297715 4v9k:CC (3.5) BS02 rna ? GO:0003676 ... P62663 23812722
    297716 4v9k:CD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    297717 4v9k:CE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    297718 4v9k:CF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    297719 4v9k:CG (3.5) BS01 rna ? GO:0000049 ... P62667 23812722
    297720 4v9k:CH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    297721 4v9k:CI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    297722 4v9k:CI (3.5) BS02 rna ? GO:0000049 ... P62669 23812722
    297723 4v9k:CJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    297724 4v9k:CK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    297725 4v9k:CK (3.5) BS02 rna ? GO:0003735 ... P62654 23812722
    297726 4v9k:CL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    297727 4v9k:CM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    297728 4v9k:CM (3.5) BS02 rna ? GO:0000049 ... P62655 23812722
    297729 4v9k:CN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    297730 4v9k:CO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    297731 4v9k:CO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    297732 4v9k:CP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    297733 4v9k:CQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722
    297734 4v9k:CR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    297735 4v9k:CS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    297736 4v9k:CS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    297737 4v9k:CT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    297738 4v9k:CY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    297739 4v9k:CY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    297740 4v9k:CY (3.5) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    297741 4v9k:CY (3.5) BS04 MG ? GO:0003746 ... Q5SHN5 23812722
    297742 4v9k:D0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    297743 4v9k:D0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    297744 4v9k:D1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    297745 4v9k:D1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    297746 4v9k:D2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    297747 4v9k:D3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    297748 4v9k:D4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    297749 4v9k:D5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    297750 4v9k:D6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    297751 4v9k:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    297752 4v9k:D8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    297753 4v9k:D9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    297754 4v9k:DC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    297755 4v9k:DC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    297756 4v9k:DD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    297757 4v9k:DE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    297758 4v9k:DF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    297759 4v9k:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    297760 4v9k:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    297761 4v9k:DH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    297762 4v9k:DJ (3.5) BS01 rna N/A N/A N/A 23812722
    297763 4v9k:DK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    297764 4v9k:DN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    297765 4v9k:DO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    297766 4v9k:DO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    297767 4v9k:DP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    297768 4v9k:DQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    297769 4v9k:DQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    297770 4v9k:DR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    297771 4v9k:DS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    297772 4v9k:DS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    297773 4v9k:DT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    297774 4v9k:DT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    297775 4v9k:DU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    297776 4v9k:DV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    297777 4v9k:DW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    297778 4v9k:DX (3.5) BS01 rna ? GO:0003735 ... Q72I06 23812722
    297779 4v9k:DY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    297780 4v9k:DZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    297781 4v9k:DZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    297782 4v9l:AB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    297783 4v9l:AC (3.5) BS01 rna ? GO:0003676 ... P62663 23812722
    297784 4v9l:AC (3.5) BS02 rna ? GO:0003676 ... P62663 23812722
    297785 4v9l:AD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    297786 4v9l:AE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    297787 4v9l:AF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    297788 4v9l:AG (3.5) BS01 rna ? GO:0000049 ... P62667 23812722
    297789 4v9l:AH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    297790 4v9l:AI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    297791 4v9l:AJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    297792 4v9l:AK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    297793 4v9l:AK (3.5) BS02 rna ? GO:0003735 ... P62654 23812722
    297794 4v9l:AL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    297795 4v9l:AM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    297796 4v9l:AN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    297797 4v9l:AO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    297798 4v9l:AO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    297799 4v9l:AP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    297800 4v9l:AQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).