SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    297801 4v9l:AR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    297802 4v9l:AS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    297803 4v9l:AS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    297804 4v9l:AT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    297805 4v9l:AY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    297806 4v9l:AY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    297807 4v9l:AY (3.5) BS03 GDP ? GO:0003746 ... Q5SHN5 23812722
    297808 4v9l:B0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    297809 4v9l:B0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    297810 4v9l:B1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    297811 4v9l:B1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    297812 4v9l:B2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    297813 4v9l:B3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    297814 4v9l:B3 (3.5) BS02 rna ? GO:0003735 ... Q72I22 23812722
    297815 4v9l:B4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    297816 4v9l:B5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    297817 4v9l:B6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    297818 4v9l:B7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    297819 4v9l:B8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    297820 4v9l:B9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    297821 4v9l:BC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    297822 4v9l:BC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    297823 4v9l:BD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    297824 4v9l:BE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    297825 4v9l:BF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    297826 4v9l:BG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    297827 4v9l:BG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    297828 4v9l:BH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    297829 4v9l:BJ (3.5) BS01 rna N/A N/A N/A 23812722
    297830 4v9l:BK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    297831 4v9l:BN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    297832 4v9l:BO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    297833 4v9l:BO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    297834 4v9l:BP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    297835 4v9l:BQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    297836 4v9l:BQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    297837 4v9l:BR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    297838 4v9l:BS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    297839 4v9l:BS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    297840 4v9l:BT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    297841 4v9l:BT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    297842 4v9l:BU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    297843 4v9l:BV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    297844 4v9l:BW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    297845 4v9l:BX (3.5) BS01 rna ? GO:0003735 ... Q72I06 23812722
    297846 4v9l:BY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    297847 4v9l:BZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    297848 4v9l:BZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    297849 4v9l:CB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    297850 4v9l:CC (3.5) BS01 rna ? GO:0003676 ... P62663 23812722
    297851 4v9l:CD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    297852 4v9l:CE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    297853 4v9l:CF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    297854 4v9l:CG (3.5) BS01 rna ? GO:0000049 ... P62667 23812722
    297855 4v9l:CH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    297856 4v9l:CI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    297857 4v9l:CI (3.5) BS02 rna ? GO:0000049 ... P62669 23812722
    297858 4v9l:CJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    297859 4v9l:CK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    297860 4v9l:CK (3.5) BS02 rna ? GO:0003735 ... P62654 23812722
    297861 4v9l:CL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    297862 4v9l:CM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    297863 4v9l:CM (3.5) BS02 rna ? GO:0000049 ... P62655 23812722
    297864 4v9l:CN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    297865 4v9l:CO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    297866 4v9l:CO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    297867 4v9l:CP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    297868 4v9l:CQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722
    297869 4v9l:CR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    297870 4v9l:CS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    297871 4v9l:CS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    297872 4v9l:CT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    297873 4v9l:CY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    297874 4v9l:CY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    297875 4v9l:CY (3.5) BS03 FUA ? GO:0003746 ... Q5SHN5 23812722
    297876 4v9l:CY (3.5) BS04 GDP ? GO:0003746 ... Q5SHN5 23812722
    297877 4v9l:D0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    297878 4v9l:D0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    297879 4v9l:D1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    297880 4v9l:D1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    297881 4v9l:D2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    297882 4v9l:D3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    297883 4v9l:D3 (3.5) BS02 rna ? GO:0003735 ... Q72I22 23812722
    297884 4v9l:D4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    297885 4v9l:D5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    297886 4v9l:D6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    297887 4v9l:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    297888 4v9l:D8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    297889 4v9l:D9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    297890 4v9l:DC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    297891 4v9l:DC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    297892 4v9l:DD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    297893 4v9l:DD (3.5) BS02 rna ? GO:0002181 ... Q72I07 23812722
    297894 4v9l:DE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    297895 4v9l:DF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    297896 4v9l:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    297897 4v9l:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    297898 4v9l:DH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    297899 4v9l:DJ (3.5) BS01 rna N/A N/A N/A 23812722
    297900 4v9l:DK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    297901 4v9l:DN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    297902 4v9l:DO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    297903 4v9l:DO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    297904 4v9l:DP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    297905 4v9l:DQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    297906 4v9l:DQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    297907 4v9l:DR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    297908 4v9l:DS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    297909 4v9l:DS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    297910 4v9l:DT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    297911 4v9l:DT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    297912 4v9l:DU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    297913 4v9l:DV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    297914 4v9l:DW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    297915 4v9l:DX (3.5) BS01 rna ? GO:0003735 ... Q72I06 23812722
    297916 4v9l:DY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    297917 4v9l:DZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    297918 4v9l:DZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    297919 4v9m:AB (4.0) BS01 rna ? GO:0003735 ... P62662 23812722
    297920 4v9m:AC (4.0) BS01 rna ? GO:0003676 ... P62663 23812722
    297921 4v9m:AC (4.0) BS02 rna ? GO:0003676 ... P62663 23812722
    297922 4v9m:AD (4.0) BS01 rna ? GO:0003723 ... P62664 23812722
    297923 4v9m:AE (4.0) BS01 rna ? GO:0003723 ... P62665 23812722
    297924 4v9m:AF (4.0) BS01 rna ? GO:0003735 ... P62666 23812722
    297925 4v9m:AF (4.0) BS02 rna ? GO:0003735 ... P62666 23812722
    297926 4v9m:AG (4.0) BS01 rna ? GO:0000049 ... P62667 23812722
    297927 4v9m:AH (4.0) BS01 rna ? GO:0003735 ... P62668 23812722
    297928 4v9m:AI (4.0) BS01 rna ? GO:0000049 ... P62669 23812722
    297929 4v9m:AI (4.0) BS02 rna ? GO:0000049 ... P62669 23812722
    297930 4v9m:AJ (4.0) BS01 rna ? GO:0000049 ... P62653 23812722
    297931 4v9m:AK (4.0) BS01 rna ? GO:0003735 ... P62654 23812722
    297932 4v9m:AK (4.0) BS02 rna ? GO:0003735 ... P62654 23812722
    297933 4v9m:AL (4.0) BS01 rna ? GO:0000049 ... P61941 23812722
    297934 4v9m:AM (4.0) BS01 rna ? GO:0000049 ... P62655 23812722
    297935 4v9m:AN (4.0) BS01 rna ? GO:0003735 ... P62656 23812722
    297936 4v9m:AO (4.0) BS01 rna ? GO:0003735 ... P62657 23812722
    297937 4v9m:AO (4.0) BS02 rna ? GO:0003735 ... P62657 23812722
    297938 4v9m:AP (4.0) BS01 rna ? GO:0003735 ... P62238 23812722
    297939 4v9m:AQ (4.0) BS01 rna ? GO:0003735 ... P62658 23812722
    297940 4v9m:AR (4.0) BS01 rna ? GO:0003735 ... P62659 23812722
    297941 4v9m:AS (4.0) BS01 rna ? GO:0003723 ... P62660 23812722
    297942 4v9m:AS (4.0) BS02 rna ? GO:0003723 ... P62660 23812722
    297943 4v9m:AT (4.0) BS01 rna ? GO:0003723 ... P62661 23812722
    297944 4v9m:AY (4.0) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    297945 4v9m:AY (4.0) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    297946 4v9m:AY (4.0) BS03 FUA ? GO:0003746 ... Q5SHN5 23812722
    297947 4v9m:AY (4.0) BS04 GDP ? GO:0003746 ... Q5SHN5 23812722
    297948 4v9m:B0 (4.0) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    297949 4v9m:B0 (4.0) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    297950 4v9m:B1 (4.0) BS01 rna ? GO:0003735 ... Q72G84 23812722
    297951 4v9m:B1 (4.0) BS02 rna ? GO:0003735 ... Q72G84 23812722
    297952 4v9m:B2 (4.0) BS01 rna ? GO:0003735 ... Q72I12 23812722
    297953 4v9m:B3 (4.0) BS01 rna ? GO:0003735 ... Q72I22 23812722
    297954 4v9m:B3 (4.0) BS02 rna ? GO:0003735 ... Q72I22 23812722
    297955 4v9m:B4 (4.0) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    297956 4v9m:B5 (4.0) BS01 rna ? GO:0003735 ... P62652 23812722
    297957 4v9m:B6 (4.0) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    297958 4v9m:B7 (4.0) BS01 rna ? GO:0003735 ... P80340 23812722
    297959 4v9m:B8 (4.0) BS01 rna ? GO:0003735 ... Q72L77 23812722
    297960 4v9m:B9 (4.0) BS01 rna ? GO:0003735 ... Q72I28 23812722
    297961 4v9m:BC (4.0) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    297962 4v9m:BC (4.0) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    297963 4v9m:BD (4.0) BS01 rna ? GO:0002181 ... Q72I07 23812722
    297964 4v9m:BD (4.0) BS02 rna ? GO:0002181 ... Q72I07 23812722
    297965 4v9m:BE (4.0) BS01 rna ? GO:0003735 ... Q72I04 23812722
    297966 4v9m:BF (4.0) BS01 rna ? GO:0003735 ... Q72I05 23812722
    297967 4v9m:BG (4.0) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    297968 4v9m:BG (4.0) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    297969 4v9m:BH (4.0) BS01 rna ? GO:0002181 ... Q72I19 23812722
    297970 4v9m:BJ (4.0) BS01 rna N/A N/A N/A 23812722
    297971 4v9m:BK (4.0) BS01 rna ? GO:0003735 ... P62442 23812722
    297972 4v9m:BN (4.0) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    297973 4v9m:BO (4.0) BS01 rna ? GO:0003735 ... Q72I14 23812722
    297974 4v9m:BO (4.0) BS02 rna ? GO:0003735 ... Q72I14 23812722
    297975 4v9m:BP (4.0) BS01 rna ? GO:0003735 ... Q72I23 23812722
    297976 4v9m:BQ (4.0) BS01 rna ? GO:0000049 ... Q72I11 23812722
    297977 4v9m:BQ (4.0) BS02 rna ? GO:0000049 ... Q72I11 23812722
    297978 4v9m:BR (4.0) BS01 rna ? GO:0003735 ... Q72I33 23812722
    297979 4v9m:BS (4.0) BS01 rna ? GO:0003735 ... Q72I20 23812722
    297980 4v9m:BS (4.0) BS02 rna ? GO:0003735 ... Q72I20 23812722
    297981 4v9m:BT (4.0) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    297982 4v9m:BT (4.0) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    297983 4v9m:BU (4.0) BS01 rna ? GO:0000027 ... Q72L76 23812722
    297984 4v9m:BV (4.0) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    297985 4v9m:BW (4.0) BS01 rna ? GO:0003735 ... Q72I09 23812722
    297986 4v9m:BX (4.0) BS01 rna ? GO:0003735 ... Q72I06 23812722
    297987 4v9m:BY (4.0) BS01 rna ? GO:0003723 ... Q72I15 23812722
    297988 4v9m:BZ (4.0) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    297989 4v9m:BZ (4.0) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    297990 4v9m:CB (4.0) BS01 rna ? GO:0003735 ... P62662 23812722
    297991 4v9m:CC (4.0) BS01 rna ? GO:0003676 ... P62663 23812722
    297992 4v9m:CD (4.0) BS01 rna ? GO:0003723 ... P62664 23812722
    297993 4v9m:CE (4.0) BS01 rna ? GO:0003723 ... P62665 23812722
    297994 4v9m:CF (4.0) BS01 rna ? GO:0003735 ... P62666 23812722
    297995 4v9m:CG (4.0) BS01 rna ? GO:0000049 ... P62667 23812722
    297996 4v9m:CH (4.0) BS01 rna ? GO:0003735 ... P62668 23812722
    297997 4v9m:CI (4.0) BS01 rna ? GO:0000049 ... P62669 23812722
    297998 4v9m:CI (4.0) BS02 rna ? GO:0000049 ... P62669 23812722
    297999 4v9m:CJ (4.0) BS01 rna ? GO:0000049 ... P62653 23812722
    298000 4v9m:CK (4.0) BS01 rna ? GO:0003735 ... P62654 23812722

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).