SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    299001 4v9r:BU (3.0) BS01 rna ? GO:0000027 ... P60491 24412368
    299002 4v9r:BU (3.0) BS02 MG ? GO:0000027 ... P60491 24412368
    299003 4v9r:BU (3.0) BS03 MG ? GO:0000027 ... P60491 24412368
    299004 4v9r:BU (3.0) BS04 MG ? GO:0000027 ... P60491 24412368
    299005 4v9r:BU (3.0) BS05 MG ? GO:0000027 ... P60491 24412368
    299006 4v9r:BU (3.0) BS06 MG ? GO:0000027 ... P60491 24412368
    299007 4v9r:BV (3.0) BS01 rna ? GO:0003735 ... P60492 24412368
    299008 4v9r:BV (3.0) BS02 MG ? GO:0003735 ... P60492 24412368
    299009 4v9r:BV (3.0) BS03 MG ? GO:0003735 ... P60492 24412368
    299010 4v9r:BV (3.0) BS04 MG ? GO:0003735 ... P60492 24412368
    299011 4v9r:BV (3.0) BS05 MG ? GO:0003735 ... P60492 24412368
    299012 4v9r:BV (3.0) BS06 MG ? GO:0003735 ... P60492 24412368
    299013 4v9r:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 24412368
    299014 4v9r:BW (3.0) BS02 MG ? GO:0003735 ... Q5SHP3 24412368
    299015 4v9r:BW (3.0) BS03 MG ? GO:0003735 ... Q5SHP3 24412368
    299016 4v9r:BX (3.0) BS01 rna ? GO:0005840 ... Q5SHP0 24412368
    299017 4v9r:BX (3.0) BS02 MG ? GO:0005840 ... Q5SHP0 24412368
    299018 4v9r:BY (3.0) BS01 rna ? GO:0005840 ... Q56435 24412368
    299019 4v9r:BY (3.0) BS02 ZN ? GO:0005840 ... Q56435 24412368
    299020 4v9r:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 24412368
    299021 4v9r:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 24412368
    299022 4v9r:CB (3.0) BS01 rna ? GO:0003735 ... P80371 24412368
    299023 4v9r:CC (3.0) BS01 rna ? GO:0003729 ... P80372 24412368
    299024 4v9r:CD (3.0) BS01 rna ? GO:0003735 ... P80373 24412368
    299025 4v9r:CD (3.0) BS02 SF4 ? GO:0003735 ... P80373 24412368
    299026 4v9r:CE (3.0) BS01 rna ? GO:0005840 ... Q5SHQ5 24412368
    299027 4v9r:CE (3.0) BS02 MG ? GO:0005840 ... Q5SHQ5 24412368
    299028 4v9r:CE (3.0) BS03 MG ? GO:0005840 ... Q5SHQ5 24412368
    299029 4v9r:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 24412368
    299030 4v9r:CF (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 24412368
    299031 4v9r:CG (3.0) BS01 rna ? GO:0000049 ... P17291 24412368
    299032 4v9r:CH (3.0) BS01 rna N/A N/A N/A 24412368
    299033 4v9r:CI (3.0) BS01 rna ? GO:0000049 ... P80374 24412368
    299034 4v9r:CI (3.0) BS02 rna ? GO:0000049 ... P80374 24412368
    299035 4v9r:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 24412368
    299036 4v9r:CK (3.0) BS01 rna ? GO:0005840 ... P80376 24412368
    299037 4v9r:CK (3.0) BS02 MG ? GO:0005840 ... P80376 24412368
    299038 4v9r:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 24412368
    299039 4v9r:CL (3.0) BS02 peptide ? GO:0000049 ... Q5SHN3 24412368
    299040 4v9r:CM (3.0) BS01 rna ? GO:0000049 ... P80377 24412368
    299041 4v9r:CM (3.0) BS02 rna ? GO:0000049 ... P80377 24412368
    299042 4v9r:CN (3.0) BS01 rna N/A N/A N/A 24412368
    299043 4v9r:CN (3.0) BS02 ZN N/A N/A N/A 24412368
    299044 4v9r:CO (3.0) BS01 rna ? GO:0005737 ... Q5SJ76 24412368
    299045 4v9r:CO (3.0) BS02 rna ? GO:0005737 ... Q5SJ76 24412368
    299046 4v9r:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 24412368
    299047 4v9r:CQ (3.0) BS01 rna N/A N/A N/A 24412368
    299048 4v9r:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 24412368
    299049 4v9r:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 24412368
    299050 4v9r:CT (3.0) BS01 rna ? GO:0005840 ... P80380 24412368
    299051 4v9r:CT (3.0) BS02 MG ? GO:0005840 ... P80380 24412368
    299052 4v9r:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 24412368
    299053 4v9r:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 24412368
    299054 4v9r:D1 (3.0) BS01 rna ? GO:0005840 ... P60494 24412368
    299055 4v9r:D2 (3.0) BS01 rna ? GO:0005840 ... Q5SHP6 24412368
    299056 4v9r:D3 (3.0) BS01 rna ? GO:0005840 ... Q5SHQ6 24412368
    299057 4v9r:D3 (3.0) BS02 rna ? GO:0005840 ... Q5SHQ6 24412368
    299058 4v9r:D3 (3.0) BS03 MG ? GO:0005840 ... Q5SHQ6 24412368
    299059 4v9r:D4 (3.0) BS01 rna ? GO:0005840 ... Q5SJE1 24412368
    299060 4v9r:D4 (3.0) BS02 ZN ? GO:0005840 ... Q5SJE1 24412368
    299061 4v9r:D5 (3.0) BS01 rna ? GO:0005840 ... P80339 24412368
    299062 4v9r:D5 (3.0) BS02 ZN ? GO:0005840 ... P80339 24412368
    299063 4v9r:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 24412368
    299064 4v9r:D6 (3.0) BS02 ZN ? GO:0000049 ... P35871 24412368
    299065 4v9r:D7 (3.0) BS01 rna ? GO:0005840 ... P80340 24412368
    299066 4v9r:D7 (3.0) BS02 MG ? GO:0005840 ... P80340 24412368
    299067 4v9r:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 24412368
    299068 4v9r:D9 (3.0) BS01 rna ? GO:0005737 ... P80256 24412368
    299069 4v9r:D9 (3.0) BS02 ZN ? GO:0005737 ... P80256 24412368
    299070 4v9r:DD (3.0) BS01 rna ? GO:0002181 ... P60405 24412368
    299071 4v9r:DD (3.0) BS02 rna ? GO:0002181 ... P60405 24412368
    299072 4v9r:DD (3.0) BS03 MG ? GO:0002181 ... P60405 24412368
    299073 4v9r:DD (3.0) BS04 MG ? GO:0002181 ... P60405 24412368
    299074 4v9r:DD (3.0) BS05 MG ? GO:0002181 ... P60405 24412368
    299075 4v9r:DD (3.0) BS06 MG ? GO:0002181 ... P60405 24412368
    299076 4v9r:DD (3.0) BS07 MG ? GO:0002181 ... P60405 24412368
    299077 4v9r:DD (3.0) BS08 MG ? GO:0002181 ... P60405 24412368
    299078 4v9r:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 24412368
    299079 4v9r:DE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 24412368
    299080 4v9r:DE (3.0) BS03 MG ? GO:0003735 ... Q5SHN8 24412368
    299081 4v9r:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 24412368
    299082 4v9r:DF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 24412368
    299083 4v9r:DF (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 24412368
    299084 4v9r:DF (3.0) BS04 MG ? GO:0003735 ... Q5SHN9 24412368
    299085 4v9r:DF (3.0) BS05 MG ? GO:0003735 ... Q5SHN9 24412368
    299086 4v9r:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 24412368
    299087 4v9r:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 24412368
    299088 4v9r:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 24412368
    299089 4v9r:DG (3.0) BS04 MG ? GO:0000049 ... Q5SHQ0 24412368
    299090 4v9r:DH (3.0) BS01 rna N/A N/A N/A 24412368
    299091 4v9r:DI (3.0) BS01 rna ? GO:0005840 ... Q5SLQ1 24412368
    299092 4v9r:DN (3.0) BS01 rna ? GO:0003729 ... P60488 24412368
    299093 4v9r:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 24412368
    299094 4v9r:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 24412368
    299095 4v9r:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 24412368
    299096 4v9r:DP (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 24412368
    299097 4v9r:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 24412368
    299098 4v9r:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 24412368
    299099 4v9r:DQ (3.0) BS03 MG ? GO:0000049 ... P60489 24412368
    299100 4v9r:DQ (3.0) BS04 MG ? GO:0000049 ... P60489 24412368
    299101 4v9r:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 24412368
    299102 4v9r:DS (3.0) BS01 rna ? GO:0005737 ... Q5SHQ4 24412368
    299103 4v9r:DS (3.0) BS02 rna ? GO:0005737 ... Q5SHQ4 24412368
    299104 4v9r:DT (3.0) BS01 rna ? GO:0003735 ... P60490 24412368
    299105 4v9r:DT (3.0) BS02 rna ? GO:0003735 ... P60490 24412368
    299106 4v9r:DU (3.0) BS01 rna ? GO:0000027 ... P60491 24412368
    299107 4v9r:DU (3.0) BS02 MG ? GO:0000027 ... P60491 24412368
    299108 4v9r:DU (3.0) BS03 MG ? GO:0000027 ... P60491 24412368
    299109 4v9r:DV (3.0) BS01 rna ? GO:0003735 ... P60492 24412368
    299110 4v9r:DV (3.0) BS02 MG ? GO:0003735 ... P60492 24412368
    299111 4v9r:DV (3.0) BS03 MG ? GO:0003735 ... P60492 24412368
    299112 4v9r:DV (3.0) BS04 MG ? GO:0003735 ... P60492 24412368
    299113 4v9r:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 24412368
    299114 4v9r:DW (3.0) BS02 MG ? GO:0003735 ... Q5SHP3 24412368
    299115 4v9r:DW (3.0) BS03 MG ? GO:0003735 ... Q5SHP3 24412368
    299116 4v9r:DX (3.0) BS01 rna ? GO:0005840 ... Q5SHP0 24412368
    299117 4v9r:DY (3.0) BS01 rna ? GO:0005840 ... Q56435 24412368
    299118 4v9r:DY (3.0) BS02 ZN ? GO:0005840 ... Q56435 24412368
    299119 4v9r:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 24412368
    299120 4v9r:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 24412368
    299121 4v9s:AB (3.1) BS01 rna ? GO:0003735 ... P80371 24412368
    299122 4v9s:AC (3.1) BS01 rna ? GO:0003676 ... P80372 24412368
    299123 4v9s:AD (3.1) BS01 rna ? GO:0003723 ... P80373 24412368
    299124 4v9s:AD (3.1) BS02 SF4 ? GO:0003723 ... P80373 24412368
    299125 4v9s:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 24412368
    299126 4v9s:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 24412368
    299127 4v9s:AG (3.1) BS01 rna ? GO:0000049 ... P17291 24412368
    299128 4v9s:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    299129 4v9s:AI (3.1) BS01 rna ? GO:0000049 ... P80374 24412368
    299130 4v9s:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 24412368
    299131 4v9s:AK (3.1) BS01 rna ? GO:0003735 ... P80376 24412368
    299132 4v9s:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 24412368
    299133 4v9s:AL (3.1) BS02 peptide ? GO:0000049 ... Q5SHN3 24412368
    299134 4v9s:AL (3.1) BS03 MG ? GO:0000049 ... Q5SHN3 24412368
    299135 4v9s:AM (3.1) BS01 rna ? GO:0000049 ... P80377 24412368
    299136 4v9s:AM (3.1) BS02 rna ? GO:0000049 ... P80377 24412368
    299137 4v9s:AM (3.1) BS03 MG ? GO:0000049 ... P80377 24412368
    299138 4v9s:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    299139 4v9s:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 24412368
    299140 4v9s:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 24412368
    299141 4v9s:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 24412368
    299142 4v9s:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 24412368
    299143 4v9s:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    299144 4v9s:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 24412368
    299145 4v9s:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 24412368
    299146 4v9s:AT (3.1) BS01 rna ? GO:0003723 ... P80380 24412368
    299147 4v9s:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 24412368
    299148 4v9s:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 24412368
    299149 4v9s:B0 (3.1) BS03 MG ? GO:0003735 ... P60493 24412368
    299150 4v9s:B0 (3.1) BS04 MG ? GO:0003735 ... P60493 24412368
    299151 4v9s:B0 (3.1) BS05 MG ? GO:0003735 ... P60493 24412368
    299152 4v9s:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 24412368
    299153 4v9s:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 24412368
    299154 4v9s:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 24412368
    299155 4v9s:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 24412368
    299156 4v9s:B3 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 24412368
    299157 4v9s:B4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 24412368
    299158 4v9s:B4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 24412368
    299159 4v9s:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 24412368
    299160 4v9s:B5 (3.1) BS02 ZN ? GO:0003735 ... P80339 24412368
    299161 4v9s:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 24412368
    299162 4v9s:B6 (3.1) BS02 ZN ? GO:0000049 ... P35871 24412368
    299163 4v9s:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 24412368
    299164 4v9s:B7 (3.1) BS02 MG ? GO:0003735 ... P80340 24412368
    299165 4v9s:B7 (3.1) BS03 MG ? GO:0003735 ... P80340 24412368
    299166 4v9s:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 24412368
    299167 4v9s:B8 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 24412368
    299168 4v9s:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 24412368
    299169 4v9s:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 24412368
    299170 4v9s:BD (3.1) BS01 rna ? GO:0002181 ... P60405 24412368
    299171 4v9s:BD (3.1) BS02 rna ? GO:0002181 ... P60405 24412368
    299172 4v9s:BD (3.1) BS03 MG ? GO:0002181 ... P60405 24412368
    299173 4v9s:BD (3.1) BS04 MG ? GO:0002181 ... P60405 24412368
    299174 4v9s:BD (3.1) BS05 MG ? GO:0002181 ... P60405 24412368
    299175 4v9s:BD (3.1) BS06 MG ? GO:0002181 ... P60405 24412368
    299176 4v9s:BD (3.1) BS07 MG ? GO:0002181 ... P60405 24412368
    299177 4v9s:BD (3.1) BS08 MG ? GO:0002181 ... P60405 24412368
    299178 4v9s:BD (3.1) BS09 MG ? GO:0002181 ... P60405 24412368
    299179 4v9s:BD (3.1) BS10 MG ? GO:0002181 ... P60405 24412368
    299180 4v9s:BD (3.1) BS11 MG ? GO:0002181 ... P60405 24412368
    299181 4v9s:BD (3.1) BS12 MG ? GO:0002181 ... P60405 24412368
    299182 4v9s:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 24412368
    299183 4v9s:BE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 24412368
    299184 4v9s:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 24412368
    299185 4v9s:BF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 24412368
    299186 4v9s:BF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 24412368
    299187 4v9s:BF (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 24412368
    299188 4v9s:BF (3.1) BS05 MG ? GO:0003735 ... Q5SHN9 24412368
    299189 4v9s:BF (3.1) BS06 MG ? GO:0003735 ... Q5SHN9 24412368
    299190 4v9s:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 24412368
    299191 4v9s:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 24412368
    299192 4v9s:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 24412368
    299193 4v9s:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    299194 4v9s:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 24412368
    299195 4v9s:BN (3.1) BS01 rna ? GO:0003729 ... P60488 24412368
    299196 4v9s:BN (3.1) BS02 MG ? GO:0003729 ... P60488 24412368
    299197 4v9s:BN (3.1) BS03 MG ? GO:0003729 ... P60488 24412368
    299198 4v9s:BN (3.1) BS04 MG ? GO:0003729 ... P60488 24412368
    299199 4v9s:BN (3.1) BS05 MG ? GO:0003729 ... P60488 24412368
    299200 4v9s:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 24412368

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).