SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    299401 4w29:AQ (3.8) BS01 rna ? GO:0003735 ... P0DOY7 25190797
    299402 4w29:AR (3.8) BS01 rna ? GO:0003735 ... P62659 25190797
    299403 4w29:AS (3.8) BS01 rna ? GO:0003723 ... P62660 25190797
    299404 4w29:AT (3.8) BS01 rna ? GO:0003723 ... P80380 25190797
    299405 4w29:AY (3.8) BS01 rna ? GO:0003746 ... Q72I01 25190797
    299406 4w29:AY (3.8) BS02 rna ? GO:0003746 ... Q72I01 25190797
    299407 4w29:AY (3.8) BS03 rna ? GO:0003746 ... Q72I01 25190797
    299408 4w29:AY (3.8) BS04 GDP ? GO:0003746 ... Q72I01 25190797
    299409 4w29:AY (3.8) BS05 FUA ? GO:0003746 ... Q72I01 25190797
    299410 4w29:B0 (3.8) BS01 rna ? GO:0003735 ... P60493 25190797
    299411 4w29:B0 (3.8) BS02 rna ? GO:0003735 ... P60493 25190797
    299412 4w29:B0 (3.8) BS03 rna ? GO:0003735 ... P60493 25190797
    299413 4w29:B1 (3.8) BS01 rna ? GO:0003735 ... P60494 25190797
    299414 4w29:B1 (3.8) BS02 rna ? GO:0003735 ... P60494 25190797
    299415 4w29:B2 (3.8) BS01 rna ? GO:0003735 ... Q72I12 25190797
    299416 4w29:B3 (3.8) BS01 rna ? GO:0003735 ... Q72I22 25190797
    299417 4w29:B4 (3.8) BS01 rna ? GO:0003735 ... Q72JR0 25190797
    299418 4w29:B5 (3.8) BS01 rna ? GO:0003735 ... P80339 25190797
    299419 4w29:B6 (3.8) BS01 rna ? GO:0003735 ... Q72GW3 25190797
    299420 4w29:B7 (3.8) BS01 rna ? GO:0003735 ... P80340 25190797
    299421 4w29:B8 (3.8) BS01 rna ? GO:0003735 ... Q72L77 25190797
    299422 4w29:B9 (3.8) BS01 rna ? GO:0003735 ... Q72I28 25190797
    299423 4w29:BC (3.8) BS01 rna ? GO:0000049 ... A0A1J1EJ43 25190797
    299424 4w29:BC (3.8) BS02 rna ? GO:0000049 ... A0A1J1EJ43 25190797
    299425 4w29:BD (3.8) BS01 rna ? GO:0002181 ... Q72I07 25190797
    299426 4w29:BE (3.8) BS01 rna ? GO:0003735 ... Q72I04 25190797
    299427 4w29:BF (3.8) BS01 rna ? GO:0003735 ... Q5SHN9 25190797
    299428 4w29:BG (3.8) BS01 rna ? GO:0000049 ... P41201 25190797
    299429 4w29:BG (3.8) BS02 rna ? GO:0000049 ... P41201 25190797
    299430 4w29:BH (3.8) BS01 rna ? GO:0002181 ... Q72I19 25190797
    299431 4w29:BJ (3.8) BS01 rna N/A N/A N/A 25190797
    299432 4w29:BK (3.8) BS01 rna ? GO:0003735 ... P62442 25190797
    299433 4w29:BN (3.8) BS01 rna ? GO:0003729 ... Q72IN1 25190797
    299434 4w29:BO (3.8) BS01 rna ? GO:0003735 ... A0A1J1EU54 25190797
    299435 4w29:BO (3.8) BS02 rna ? GO:0003735 ... A0A1J1EU54 25190797
    299436 4w29:BP (3.8) BS01 rna ? GO:0003735 ... Q72I23 25190797
    299437 4w29:BQ (3.8) BS01 rna ? GO:0000049 ... Q72I11 25190797
    299438 4w29:BQ (3.8) BS02 rna ? GO:0000049 ... Q72I11 25190797
    299439 4w29:BQ (3.8) BS03 rna ? GO:0000049 ... Q72I11 25190797
    299440 4w29:BR (3.8) BS01 rna ? GO:0003735 ... Q72I33 25190797
    299441 4w29:BS (3.8) BS01 rna ? GO:0003735 ... Q72I20 25190797
    299442 4w29:BS (3.8) BS02 rna ? GO:0003735 ... Q72I20 25190797
    299443 4w29:BT (3.8) BS01 rna ? GO:0003735 ... P60490 25190797
    299444 4w29:BT (3.8) BS02 rna ? GO:0003735 ... P60490 25190797
    299445 4w29:BU (3.8) BS01 rna ? GO:0000027 ... Q72L76 25190797
    299446 4w29:BV (3.8) BS01 rna ? GO:0003723 ... Q72HR2 25190797
    299447 4w29:BW (3.8) BS01 rna ? GO:0003735 ... Q72I09 25190797
    299448 4w29:BX (3.8) BS01 rna ? GO:0003735 ... Q72I06 25190797
    299449 4w29:BY (3.8) BS01 rna ? GO:0003723 ... Q72I15 25190797
    299450 4w29:BZ (3.8) BS01 rna ? GO:0003723 ... Q72IA7 25190797
    299451 4w29:BZ (3.8) BS02 rna ? GO:0003723 ... Q72IA7 25190797
    299452 4w29:CB (3.8) BS01 rna ? GO:0003735 ... P62662 25190797
    299453 4w29:CC (3.8) BS01 rna ? GO:0003676 ... P62663 25190797
    299454 4w29:CC (3.8) BS02 rna ? GO:0003676 ... P62663 25190797
    299455 4w29:CD (3.8) BS01 rna ? GO:0003723 ... P62664 25190797
    299456 4w29:CD (3.8) BS02 rna ? GO:0003723 ... P62664 25190797
    299457 4w29:CE (3.8) BS01 rna ? GO:0003723 ... P62665 25190797
    299458 4w29:CF (3.8) BS01 rna ? GO:0003735 ... P62666 25190797
    299459 4w29:CG (3.8) BS01 rna ? GO:0000049 ... P62667 25190797
    299460 4w29:CH (3.8) BS01 rna ? GO:0003735 ... P62668 25190797
    299461 4w29:CI (3.8) BS01 rna ? GO:0000049 ... P80374 25190797
    299462 4w29:CI (3.8) BS02 rna ? GO:0000049 ... P80374 25190797
    299463 4w29:CJ (3.8) BS01 rna ? GO:0000049 ... P62653 25190797
    299464 4w29:CK (3.8) BS01 rna ? GO:0003735 ... P62654 25190797
    299465 4w29:CL (3.8) BS01 rna ? GO:0000049 ... P61941 25190797
    299466 4w29:CM (3.8) BS01 rna ? GO:0000049 ... P62655 25190797
    299467 4w29:CM (3.8) BS02 rna ? GO:0000049 ... P62655 25190797
    299468 4w29:CM (3.8) BS03 rna ? GO:0000049 ... P62655 25190797
    299469 4w29:CN (3.8) BS01 rna ? GO:0003735 ... P62656 25190797
    299470 4w29:CO (3.8) BS01 rna ? GO:0003735 ... P62657 25190797
    299471 4w29:CO (3.8) BS02 rna ? GO:0003735 ... P62657 25190797
    299472 4w29:CP (3.8) BS01 rna ? GO:0003735 ... P62238 25190797
    299473 4w29:CQ (3.8) BS01 rna ? GO:0003735 ... P0DOY7 25190797
    299474 4w29:CR (3.8) BS01 rna ? GO:0003735 ... P62659 25190797
    299475 4w29:CS (3.8) BS01 rna ? GO:0003723 ... P62660 25190797
    299476 4w29:CT (3.8) BS01 rna ? GO:0003723 ... P80380 25190797
    299477 4w29:CY (3.8) BS01 rna ? GO:0003746 ... Q72I01 25190797
    299478 4w29:CY (3.8) BS02 rna ? GO:0003746 ... Q72I01 25190797
    299479 4w29:CY (3.8) BS03 rna ? GO:0003746 ... Q72I01 25190797
    299480 4w29:CY (3.8) BS04 GDP ? GO:0003746 ... Q72I01 25190797
    299481 4w29:CY (3.8) BS05 FUA ? GO:0003746 ... Q72I01 25190797
    299482 4w29:D0 (3.8) BS01 rna ? GO:0003735 ... P60493 25190797
    299483 4w29:D0 (3.8) BS02 rna ? GO:0003735 ... P60493 25190797
    299484 4w29:D0 (3.8) BS03 rna ? GO:0003735 ... P60493 25190797
    299485 4w29:D1 (3.8) BS01 rna ? GO:0003735 ... P60494 25190797
    299486 4w29:D1 (3.8) BS02 rna ? GO:0003735 ... P60494 25190797
    299487 4w29:D2 (3.8) BS01 rna ? GO:0003735 ... Q72I12 25190797
    299488 4w29:D3 (3.8) BS01 rna ? GO:0003735 ... Q72I22 25190797
    299489 4w29:D3 (3.8) BS02 rna ? GO:0003735 ... Q72I22 25190797
    299490 4w29:D4 (3.8) BS01 rna ? GO:0003735 ... Q72JR0 25190797
    299491 4w29:D5 (3.8) BS01 rna ? GO:0003735 ... P80339 25190797
    299492 4w29:D6 (3.8) BS01 rna ? GO:0003735 ... Q72GW3 25190797
    299493 4w29:D7 (3.8) BS01 rna ? GO:0003735 ... P80340 25190797
    299494 4w29:D8 (3.8) BS01 rna ? GO:0003735 ... Q72L77 25190797
    299495 4w29:D9 (3.8) BS01 rna ? GO:0003735 ... Q72I28 25190797
    299496 4w29:DC (3.8) BS01 rna ? GO:0000049 ... A0A1J1EJ43 25190797
    299497 4w29:DC (3.8) BS02 rna ? GO:0000049 ... A0A1J1EJ43 25190797
    299498 4w29:DD (3.8) BS01 rna ? GO:0002181 ... Q72I07 25190797
    299499 4w29:DE (3.8) BS01 rna ? GO:0003735 ... Q72I04 25190797
    299500 4w29:DF (3.8) BS01 rna ? GO:0003735 ... Q5SHN9 25190797
    299501 4w29:DG (3.8) BS01 rna ? GO:0000049 ... P41201 25190797
    299502 4w29:DG (3.8) BS02 rna ? GO:0000049 ... P41201 25190797
    299503 4w29:DH (3.8) BS01 rna ? GO:0002181 ... Q72I19 25190797
    299504 4w29:DJ (3.8) BS01 rna N/A N/A N/A 25190797
    299505 4w29:DK (3.8) BS01 rna ? GO:0003735 ... P62442 25190797
    299506 4w29:DN (3.8) BS01 rna ? GO:0003729 ... Q72IN1 25190797
    299507 4w29:DO (3.8) BS01 rna ? GO:0003735 ... A0A1J1EU54 25190797
    299508 4w29:DO (3.8) BS02 rna ? GO:0003735 ... A0A1J1EU54 25190797
    299509 4w29:DP (3.8) BS01 rna ? GO:0003735 ... Q72I23 25190797
    299510 4w29:DQ (3.8) BS01 rna ? GO:0000049 ... Q72I11 25190797
    299511 4w29:DQ (3.8) BS02 rna ? GO:0000049 ... Q72I11 25190797
    299512 4w29:DR (3.8) BS01 rna ? GO:0003735 ... Q72I33 25190797
    299513 4w29:DS (3.8) BS01 rna ? GO:0003735 ... Q72I20 25190797
    299514 4w29:DS (3.8) BS02 rna ? GO:0003735 ... Q72I20 25190797
    299515 4w29:DT (3.8) BS01 rna ? GO:0003735 ... P60490 25190797
    299516 4w29:DT (3.8) BS02 rna ? GO:0003735 ... P60490 25190797
    299517 4w29:DU (3.8) BS01 rna ? GO:0000027 ... Q72L76 25190797
    299518 4w29:DV (3.8) BS01 rna ? GO:0003723 ... Q72HR2 25190797
    299519 4w29:DW (3.8) BS01 rna ? GO:0003735 ... Q72I09 25190797
    299520 4w29:DX (3.8) BS01 rna ? GO:0003735 ... Q72I06 25190797
    299521 4w29:DY (3.8) BS01 rna ? GO:0003723 ... Q72I15 25190797
    299522 4w29:DZ (3.8) BS01 rna ? GO:0003723 ... Q72IA7 25190797
    299523 4w29:DZ (3.8) BS02 rna ? GO:0003723 ... Q72IA7 25190797
    299524 4w2e:0 (2.9) BS01 rna ? GO:0003735 ... P60493 25104389
    299525 4w2e:0 (2.9) BS02 rna ? GO:0003735 ... P60493 25104389
    299526 4w2e:1 (2.9) BS01 rna ? GO:0003735 ... P60494 25104389
    299527 4w2e:1 (2.9) BS02 rna ? GO:0003735 ... P60494 25104389
    299528 4w2e:1 (2.9) BS03 MG ? GO:0003735 ... P60494 25104389
    299529 4w2e:2 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 25104389
    299530 4w2e:3 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25104389
    299531 4w2e:4 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 25104389
    299532 4w2e:4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25104389
    299533 4w2e:5 (2.9) BS01 rna ? GO:0003735 ... P80339 25104389
    299534 4w2e:5 (2.9) BS02 ZN ? GO:0003735 ... P80339 25104389
    299535 4w2e:6 (2.9) BS01 rna ? GO:0000049 ... P35871 25104389
    299536 4w2e:6 (2.9) BS02 ZN ? GO:0000049 ... P35871 25104389
    299537 4w2e:7 (2.9) BS01 rna ? GO:0003735 ... P80340 25104389
    299538 4w2e:7 (2.9) BS02 MG ? GO:0003735 ... P80340 25104389
    299539 4w2e:8 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 25104389
    299540 4w2e:9 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 25104389
    299541 4w2e:9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25104389
    299542 4w2e:D (2.9) BS01 rna ? GO:0002181 ... P60405 25104389
    299543 4w2e:D (2.9) BS02 rna ? GO:0002181 ... P60405 25104389
    299544 4w2e:D (2.9) BS03 MG ? GO:0002181 ... P60405 25104389
    299545 4w2e:D (2.9) BS04 MG ? GO:0002181 ... P60405 25104389
    299546 4w2e:D (2.9) BS05 MG ? GO:0002181 ... P60405 25104389
    299547 4w2e:E (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 25104389
    299548 4w2e:E (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25104389
    299549 4w2e:E (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 25104389
    299550 4w2e:F (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 25104389
    299551 4w2e:F (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25104389
    299552 4w2e:G (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25104389
    299553 4w2e:G (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25104389
    299554 4w2e:G (2.9) BS03 rna ? GO:0000049 ... Q5SHQ0 25104389
    299555 4w2e:H (2.9) BS01 rna N/A GO:0003735 ... N/A 25104389
    299556 4w2e:J (2.9) BS01 rna ? GO:0005840 ... Q8VVE3 25104389
    299557 4w2e:K (2.9) BS01 rna ? GO:0003735 ... Q5SLP6 25104389
    299558 4w2e:N (2.9) BS01 rna ? GO:0003729 ... P60488 25104389
    299559 4w2e:N (2.9) BS02 MG ? GO:0003729 ... P60488 25104389
    299560 4w2e:O (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 25104389
    299561 4w2e:O (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 25104389
    299562 4w2e:P (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25104389
    299563 4w2e:P (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25104389
    299564 4w2e:Q (2.9) BS01 rna ? GO:0000049 ... P60489 25104389
    299565 4w2e:Q (2.9) BS02 rna ? GO:0000049 ... P60489 25104389
    299566 4w2e:Q (2.9) BS03 MG ? GO:0000049 ... P60489 25104389
    299567 4w2e:Q (2.9) BS04 MG ? GO:0000049 ... P60489 25104389
    299568 4w2e:R (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25104389
    299569 4w2e:R (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 25104389
    299570 4w2e:S (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25104389
    299571 4w2e:S (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25104389
    299572 4w2e:T (2.9) BS01 rna ? GO:0003735 ... P60490 25104389
    299573 4w2e:T (2.9) BS02 rna ? GO:0003735 ... P60490 25104389
    299574 4w2e:U (2.9) BS01 rna ? GO:0000027 ... P60491 25104389
    299575 4w2e:U (2.9) BS02 MG ? GO:0000027 ... P60491 25104389
    299576 4w2e:V (2.9) BS01 rna ? GO:0003723 ... P60492 25104389
    299577 4w2e:V (2.9) BS02 MG ? GO:0003723 ... P60492 25104389
    299578 4w2e:W (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 25104389
    299579 4w2e:X (2.9) BS01 rna ? GO:0003735 ... Q5SHP0 25104389
    299580 4w2e:Y (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 25104389
    299581 4w2e:Y (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25104389
    299582 4w2e:Z (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25104389
    299583 4w2e:Z (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25104389
    299584 4w2e:b (2.9) BS01 rna ? GO:0003735 ... P80371 25104389
    299585 4w2e:c (2.9) BS01 rna ? GO:0003676 ... P80372 25104389
    299586 4w2e:d (2.9) BS01 rna ? GO:0003723 ... P80373 25104389
    299587 4w2e:d (2.9) BS02 SF4 ? GO:0003723 ... P80373 25104389
    299588 4w2e:e (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25104389
    299589 4w2e:f (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25104389
    299590 4w2e:g (2.9) BS01 rna ? GO:0000049 ... P17291 25104389
    299591 4w2e:g (2.9) BS02 rna ? GO:0000049 ... P17291 25104389
    299592 4w2e:h (2.9) BS01 rna N/A GO:0003735 ... N/A 25104389
    299593 4w2e:i (2.9) BS01 rna ? GO:0000049 ... P80374 25104389
    299594 4w2e:j (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25104389
    299595 4w2e:k (2.9) BS01 rna ? GO:0003735 ... P80376 25104389
    299596 4w2e:k (2.9) BS02 MG ? GO:0003735 ... P80376 25104389
    299597 4w2e:l (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25104389
    299598 4w2e:l (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 25104389
    299599 4w2e:m (2.9) BS01 rna ? GO:0000049 ... P80377 25104389
    299600 4w2e:m (2.9) BS02 rna ? GO:0000049 ... P80377 25104389

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).