SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    299601 4w2e:m (2.9) BS03 MG ? GO:0000049 ... P80377 25104389
    299602 4w2e:n (2.9) BS01 rna N/A GO:0003735 ... N/A 25104389
    299603 4w2e:n (2.9) BS02 ZN N/A GO:0003735 ... N/A 25104389
    299604 4w2e:o (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25104389
    299605 4w2e:o (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 25104389
    299606 4w2e:p (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 25104389
    299607 4w2e:q (2.9) BS01 rna N/A GO:0003735 ... N/A 25104389
    299608 4w2e:r (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25104389
    299609 4w2e:s (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 25104389
    299610 4w2e:t (2.9) BS01 rna ? GO:0003723 ... P80380 25104389
    299611 4w2e:y (2.9) BS01 rna ?
    3.6.5.n1
    GO:0003735 ... Q5SKA7
    Q5SLQ1
    25104389
    299612 4w2e:y (2.9) BS02 rna ?
    3.6.5.n1
    GO:0003735 ... Q5SKA7
    Q5SLQ1
    25104389
    299613 4w2e:y (2.9) BS03 MG ?
    3.6.5.n1
    GO:0003735 ... Q5SKA7
    Q5SLQ1
    25104389
    299614 4w2e:y (2.9) BS04 GDP ?
    3.6.5.n1
    GO:0003735 ... Q5SKA7
    Q5SLQ1
    25104389
    299615 4w2f:AB (2.4) BS01 rna ? GO:0003735 ... P80371 25306919
    299616 4w2f:AB (2.4) BS02 MG ? GO:0003735 ... P80371 25306919
    299617 4w2f:AC (2.4) BS01 rna ? GO:0003676 ... P80372 25306919
    299618 4w2f:AD (2.4) BS01 rna ? GO:0003723 ... P80373 25306919
    299619 4w2f:AD (2.4) BS02 SF4 ? GO:0003723 ... P80373 25306919
    299620 4w2f:AE (2.4) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    299621 4w2f:AE (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    299622 4w2f:AE (2.4) BS03 MG ? GO:0003723 ... Q5SHQ5 25306919
    299623 4w2f:AF (2.4) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    299624 4w2f:AF (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 25306919
    299625 4w2f:AG (2.4) BS01 rna ? GO:0000049 ... P17291 25306919
    299626 4w2f:AG (2.4) BS02 rna ? GO:0000049 ... P17291 25306919
    299627 4w2f:AH (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    299628 4w2f:AI (2.4) BS01 rna ? GO:0000049 ... P80374 25306919
    299629 4w2f:AJ (2.4) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    299630 4w2f:AK (2.4) BS01 rna ? GO:0003735 ... P80376 25306919
    299631 4w2f:AK (2.4) BS02 MG ? GO:0003735 ... P80376 25306919
    299632 4w2f:AL (2.4) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    299633 4w2f:AL (2.4) BS02 MG ? GO:0000049 ... Q5SHN3 25306919
    299634 4w2f:AM (2.4) BS01 rna ? GO:0000049 ... P80377 25306919
    299635 4w2f:AM (2.4) BS02 rna ? GO:0000049 ... P80377 25306919
    299636 4w2f:AM (2.4) BS03 rna ? GO:0000049 ... P80377 25306919
    299637 4w2f:AM (2.4) BS04 rna ? GO:0000049 ... P80377 25306919
    299638 4w2f:AM (2.4) BS05 MG ? GO:0000049 ... P80377 25306919
    299639 4w2f:AN (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    299640 4w2f:AN (2.4) BS02 ZN N/A GO:0003735 ... N/A 25306919
    299641 4w2f:AO (2.4) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    299642 4w2f:AO (2.4) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    299643 4w2f:AP (2.4) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    299644 4w2f:AQ (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    299645 4w2f:AR (2.4) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    299646 4w2f:AS (2.4) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    299647 4w2f:AT (2.4) BS01 rna ? GO:0003723 ... P80380 25306919
    299648 4w2f:B0 (2.4) BS01 rna ? GO:0003735 ... P60493 25306919
    299649 4w2f:B0 (2.4) BS02 rna ? GO:0003735 ... P60493 25306919
    299650 4w2f:B0 (2.4) BS03 rna ? GO:0003735 ... P60493 25306919
    299651 4w2f:B0 (2.4) BS04 MG ? GO:0003735 ... P60493 25306919
    299652 4w2f:B0 (2.4) BS05 MG ? GO:0003735 ... P60493 25306919
    299653 4w2f:B1 (2.4) BS01 rna ? GO:0003735 ... P60494 25306919
    299654 4w2f:B1 (2.4) BS02 rna ? GO:0003735 ... P60494 25306919
    299655 4w2f:B1 (2.4) BS03 MG ? GO:0003735 ... P60494 25306919
    299656 4w2f:B2 (2.4) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    299657 4w2f:B2 (2.4) BS02 MG ? GO:0003735 ... Q5SHP6 25306919
    299658 4w2f:B2 (2.4) BS03 MG ? GO:0003735 ... Q5SHP6 25306919
    299659 4w2f:B3 (2.4) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    299660 4w2f:B3 (2.4) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    299661 4w2f:B3 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 25306919
    299662 4w2f:B3 (2.4) BS04 MG ? GO:0003735 ... Q5SHQ6 25306919
    299663 4w2f:B3 (2.4) BS05 MG ? GO:0003735 ... Q5SHQ6 25306919
    299664 4w2f:B4 (2.4) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    299665 4w2f:B4 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    299666 4w2f:B5 (2.4) BS01 rna ? GO:0003735 ... P80339 25306919
    299667 4w2f:B5 (2.4) BS02 ZN ? GO:0003735 ... P80339 25306919
    299668 4w2f:B5 (2.4) BS03 MG ? GO:0003735 ... P80339 25306919
    299669 4w2f:B6 (2.4) BS01 rna ? GO:0000049 ... P35871 25306919
    299670 4w2f:B6 (2.4) BS02 MG ? GO:0000049 ... P35871 25306919
    299671 4w2f:B6 (2.4) BS03 ZN ? GO:0000049 ... P35871 25306919
    299672 4w2f:B6 (2.4) BS04 MG ? GO:0000049 ... P35871 25306919
    299673 4w2f:B7 (2.4) BS01 rna ? GO:0003735 ... P80340 25306919
    299674 4w2f:B7 (2.4) BS02 MG ? GO:0003735 ... P80340 25306919
    299675 4w2f:B7 (2.4) BS03 MG ? GO:0003735 ... P80340 25306919
    299676 4w2f:B7 (2.4) BS04 MG ? GO:0003735 ... P80340 25306919
    299677 4w2f:B8 (2.4) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    299678 4w2f:B8 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 25306919
    299679 4w2f:B8 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 25306919
    299680 4w2f:B9 (2.4) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    299681 4w2f:B9 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    299682 4w2f:BD (2.4) BS01 rna ? GO:0002181 ... P60405 25306919
    299683 4w2f:BD (2.4) BS02 MG ? GO:0002181 ... P60405 25306919
    299684 4w2f:BD (2.4) BS03 MG ? GO:0002181 ... P60405 25306919
    299685 4w2f:BD (2.4) BS04 MG ? GO:0002181 ... P60405 25306919
    299686 4w2f:BD (2.4) BS05 MG ? GO:0002181 ... P60405 25306919
    299687 4w2f:BD (2.4) BS06 MG ? GO:0002181 ... P60405 25306919
    299688 4w2f:BD (2.4) BS07 MG ? GO:0002181 ... P60405 25306919
    299689 4w2f:BD (2.4) BS08 MG ? GO:0002181 ... P60405 25306919
    299690 4w2f:BD (2.4) BS09 MG ? GO:0002181 ... P60405 25306919
    299691 4w2f:BD (2.4) BS10 MG ? GO:0002181 ... P60405 25306919
    299692 4w2f:BD (2.4) BS11 MG ? GO:0002181 ... P60405 25306919
    299693 4w2f:BE (2.4) BS01 rna ? GO:0003735 ... Q5SHN8 25306919
    299694 4w2f:BE (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 25306919
    299695 4w2f:BE (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 25306919
    299696 4w2f:BE (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 25306919
    299697 4w2f:BE (2.4) BS05 MG ? GO:0003735 ... Q5SHN8 25306919
    299698 4w2f:BF (2.4) BS01 rna ? GO:0003735 ... Q5SHN9 25306919
    299699 4w2f:BF (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 25306919
    299700 4w2f:BF (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 25306919
    299701 4w2f:BF (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 25306919
    299702 4w2f:BF (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 25306919
    299703 4w2f:BF (2.4) BS06 MG ? GO:0003735 ... Q5SHN9 25306919
    299704 4w2f:BF (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 25306919
    299705 4w2f:BF (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 25306919
    299706 4w2f:BF (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 25306919
    299707 4w2f:BF (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 25306919
    299708 4w2f:BF (2.4) BS11 MG ? GO:0003735 ... Q5SHN9 25306919
    299709 4w2f:BF (2.4) BS12 MG ? GO:0003735 ... Q5SHN9 25306919
    299710 4w2f:BG (2.4) BS01 rna ? GO:0000049 ... Q5SHQ0 25306919
    299711 4w2f:BG (2.4) BS02 rna ? GO:0000049 ... Q5SHQ0 25306919
    299712 4w2f:BG (2.4) BS03 rna ? GO:0000049 ... Q5SHQ0 25306919
    299713 4w2f:BG (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 25306919
    299714 4w2f:BG (2.4) BS05 MG ? GO:0000049 ... Q5SHQ0 25306919
    299715 4w2f:BH (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    299716 4w2f:BI (2.4) BS01 rna ? GO:0003735 ... Q5SLQ1 25306919
    299717 4w2f:BI (2.4) BS02 MG ? GO:0003735 ... Q5SLQ1 25306919
    299718 4w2f:BN (2.4) BS01 rna ? GO:0003729 ... P60488 25306919
    299719 4w2f:BN (2.4) BS02 MG ? GO:0003729 ... P60488 25306919
    299720 4w2f:BN (2.4) BS03 MG ? GO:0003729 ... P60488 25306919
    299721 4w2f:BO (2.4) BS01 rna ? GO:0003735 ... Q5SHP8 25306919
    299722 4w2f:BO (2.4) BS02 rna ? GO:0003735 ... Q5SHP8 25306919
    299723 4w2f:BO (2.4) BS03 MG ? GO:0003735 ... Q5SHP8 25306919
    299724 4w2f:BO (2.4) BS04 MG ? GO:0003735 ... Q5SHP8 25306919
    299725 4w2f:BP (2.4) BS01 rna ? GO:0003735 ... Q5SHQ7 25306919
    299726 4w2f:BP (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 25306919
    299727 4w2f:BP (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 25306919
    299728 4w2f:BP (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 25306919
    299729 4w2f:BP (2.4) BS05 MG ? GO:0003735 ... Q5SHQ7 25306919
    299730 4w2f:BP (2.4) BS06 MG ? GO:0003735 ... Q5SHQ7 25306919
    299731 4w2f:BQ (2.4) BS01 rna ? GO:0000049 ... P60489 25306919
    299732 4w2f:BQ (2.4) BS02 rna ? GO:0000049 ... P60489 25306919
    299733 4w2f:BQ (2.4) BS03 rna ? GO:0000049 ... P60489 25306919
    299734 4w2f:BQ (2.4) BS04 MG ? GO:0000049 ... P60489 25306919
    299735 4w2f:BQ (2.4) BS05 MG ? GO:0000049 ... P60489 25306919
    299736 4w2f:BQ (2.4) BS06 MG ? GO:0000049 ... P60489 25306919
    299737 4w2f:BQ (2.4) BS07 MG ? GO:0000049 ... P60489 25306919
    299738 4w2f:BQ (2.4) BS08 MG ? GO:0000049 ... P60489 25306919
    299739 4w2f:BR (2.4) BS01 rna ? GO:0003735 ... Q9Z9H5 25306919
    299740 4w2f:BR (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 25306919
    299741 4w2f:BR (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 25306919
    299742 4w2f:BR (2.4) BS04 MG ? GO:0003735 ... Q9Z9H5 25306919
    299743 4w2f:BS (2.4) BS01 rna ? GO:0003735 ... Q5SHQ4 25306919
    299744 4w2f:BS (2.4) BS02 rna ? GO:0003735 ... Q5SHQ4 25306919
    299745 4w2f:BS (2.4) BS03 MG ? GO:0003735 ... Q5SHQ4 25306919
    299746 4w2f:BS (2.4) BS04 MG ? GO:0003735 ... Q5SHQ4 25306919
    299747 4w2f:BT (2.4) BS01 rna ? GO:0003735 ... P60490 25306919
    299748 4w2f:BT (2.4) BS02 rna ? GO:0003735 ... P60490 25306919
    299749 4w2f:BT (2.4) BS03 MG ? GO:0003735 ... P60490 25306919
    299750 4w2f:BU (2.4) BS01 rna ? GO:0000027 ... P60491 25306919
    299751 4w2f:BU (2.4) BS02 MG ? GO:0000027 ... P60491 25306919
    299752 4w2f:BU (2.4) BS03 MG ? GO:0000027 ... P60491 25306919
    299753 4w2f:BU (2.4) BS04 MG ? GO:0000027 ... P60491 25306919
    299754 4w2f:BU (2.4) BS05 MG ? GO:0000027 ... P60491 25306919
    299755 4w2f:BU (2.4) BS06 MG ? GO:0000027 ... P60491 25306919
    299756 4w2f:BU (2.4) BS07 MG ? GO:0000027 ... P60491 25306919
    299757 4w2f:BU (2.4) BS08 MG ? GO:0000027 ... P60491 25306919
    299758 4w2f:BU (2.4) BS09 MG ? GO:0000027 ... P60491 25306919
    299759 4w2f:BV (2.4) BS01 rna ? GO:0003723 ... P60492 25306919
    299760 4w2f:BV (2.4) BS02 MG ? GO:0003723 ... P60492 25306919
    299761 4w2f:BV (2.4) BS03 MG ? GO:0003723 ... P60492 25306919
    299762 4w2f:BV (2.4) BS04 MG ? GO:0003723 ... P60492 25306919
    299763 4w2f:BV (2.4) BS05 MG ? GO:0003723 ... P60492 25306919
    299764 4w2f:BV (2.4) BS06 MG ? GO:0003723 ... P60492 25306919
    299765 4w2f:BW (2.4) BS01 rna ? GO:0003735 ... Q5SHP3 25306919
    299766 4w2f:BW (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 25306919
    299767 4w2f:BW (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 25306919
    299768 4w2f:BW (2.4) BS04 MG ? GO:0003735 ... Q5SHP3 25306919
    299769 4w2f:BW (2.4) BS05 MG ? GO:0003735 ... Q5SHP3 25306919
    299770 4w2f:BX (2.4) BS01 rna ? GO:0003735 ... Q5SHP0 25306919
    299771 4w2f:BX (2.4) BS02 MG ? GO:0003735 ... Q5SHP0 25306919
    299772 4w2f:BX (2.4) BS03 MG ? GO:0003735 ... Q5SHP0 25306919
    299773 4w2f:BX (2.4) BS04 MG ? GO:0003735 ... Q5SHP0 25306919
    299774 4w2f:BX (2.4) BS05 MG ? GO:0003735 ... Q5SHP0 25306919
    299775 4w2f:BX (2.4) BS06 MG ? GO:0003735 ... Q5SHP0 25306919
    299776 4w2f:BY (2.4) BS01 rna ? GO:0003723 ... Q5SHP9 25306919
    299777 4w2f:BY (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 25306919
    299778 4w2f:BY (2.4) BS03 MG ? GO:0003723 ... Q5SHP9 25306919
    299779 4w2f:BZ (2.4) BS01 rna ? GO:0003723 ... Q5SHZ1 25306919
    299780 4w2f:BZ (2.4) BS02 rna ? GO:0003723 ... Q5SHZ1 25306919
    299781 4w2f:BZ (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 25306919
    299782 4w2f:CB (2.4) BS01 rna ? GO:0003735 ... P80371 25306919
    299783 4w2f:CC (2.4) BS01 rna ? GO:0003676 ... P80372 25306919
    299784 4w2f:CD (2.4) BS01 rna ? GO:0003723 ... P80373 25306919
    299785 4w2f:CD (2.4) BS02 SF4 ? GO:0003723 ... P80373 25306919
    299786 4w2f:CD (2.4) BS03 MG ? GO:0003723 ... P80373 25306919
    299787 4w2f:CE (2.4) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    299788 4w2f:CE (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    299789 4w2f:CF (2.4) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    299790 4w2f:CF (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 25306919
    299791 4w2f:CG (2.4) BS01 rna ? GO:0000049 ... P17291 25306919
    299792 4w2f:CG (2.4) BS02 rna ? GO:0000049 ... P17291 25306919
    299793 4w2f:CH (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    299794 4w2f:CI (2.4) BS01 rna ? GO:0000049 ... P80374 25306919
    299795 4w2f:CI (2.4) BS02 rna ? GO:0000049 ... P80374 25306919
    299796 4w2f:CJ (2.4) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    299797 4w2f:CK (2.4) BS01 rna ? GO:0003735 ... P80376 25306919
    299798 4w2f:CK (2.4) BS02 MG ? GO:0003735 ... P80376 25306919
    299799 4w2f:CL (2.4) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    299800 4w2f:CL (2.4) BS02 MG ? GO:0000049 ... Q5SHN3 25306919

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).