SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    299801 4w2f:CM (2.4) BS01 rna ? GO:0000049 ... P80377 25306919
    299802 4w2f:CM (2.4) BS02 rna ? GO:0000049 ... P80377 25306919
    299803 4w2f:CM (2.4) BS03 rna ? GO:0000049 ... P80377 25306919
    299804 4w2f:CN (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    299805 4w2f:CN (2.4) BS02 ZN N/A GO:0003735 ... N/A 25306919
    299806 4w2f:CO (2.4) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    299807 4w2f:CO (2.4) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    299808 4w2f:CP (2.4) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    299809 4w2f:CQ (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    299810 4w2f:CQ (2.4) BS02 MG N/A GO:0003735 ... N/A 25306919
    299811 4w2f:CQ (2.4) BS03 MG N/A GO:0003735 ... N/A 25306919
    299812 4w2f:CR (2.4) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    299813 4w2f:CR (2.4) BS02 MG ? GO:0003735 ... Q5SLQ0 25306919
    299814 4w2f:CS (2.4) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    299815 4w2f:CT (2.4) BS01 rna ? GO:0003723 ... P80380 25306919
    299816 4w2f:CT (2.4) BS02 MG ? GO:0003723 ... P80380 25306919
    299817 4w2f:D0 (2.4) BS01 rna ? GO:0003735 ... P60493 25306919
    299818 4w2f:D0 (2.4) BS02 rna ? GO:0003735 ... P60493 25306919
    299819 4w2f:D1 (2.4) BS01 rna ? GO:0003735 ... P60494 25306919
    299820 4w2f:D1 (2.4) BS02 rna ? GO:0003735 ... P60494 25306919
    299821 4w2f:D1 (2.4) BS03 MG ? GO:0003735 ... P60494 25306919
    299822 4w2f:D2 (2.4) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    299823 4w2f:D3 (2.4) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    299824 4w2f:D3 (2.4) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    299825 4w2f:D3 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 25306919
    299826 4w2f:D4 (2.4) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    299827 4w2f:D4 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    299828 4w2f:D5 (2.4) BS01 rna ? GO:0003735 ... P80339 25306919
    299829 4w2f:D5 (2.4) BS02 MG ? GO:0003735 ... P80339 25306919
    299830 4w2f:D5 (2.4) BS03 ZN ? GO:0003735 ... P80339 25306919
    299831 4w2f:D6 (2.4) BS01 rna ? GO:0000049 ... P35871 25306919
    299832 4w2f:D6 (2.4) BS02 ZN ? GO:0000049 ... P35871 25306919
    299833 4w2f:D7 (2.4) BS01 rna ? GO:0003735 ... P80340 25306919
    299834 4w2f:D7 (2.4) BS02 MG ? GO:0003735 ... P80340 25306919
    299835 4w2f:D7 (2.4) BS03 MG ? GO:0003735 ... P80340 25306919
    299836 4w2f:D8 (2.4) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    299837 4w2f:D9 (2.4) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    299838 4w2f:D9 (2.4) BS02 MG ? GO:0003735 ... Q5SHR2 25306919
    299839 4w2f:D9 (2.4) BS03 ZN ? GO:0003735 ... Q5SHR2 25306919
    299840 4w2f:DD (2.4) BS01 rna ? GO:0002181 ... P60405 25306919
    299841 4w2f:DD (2.4) BS02 rna ? GO:0002181 ... P60405 25306919
    299842 4w2f:DD (2.4) BS03 MG ? GO:0002181 ... P60405 25306919
    299843 4w2f:DD (2.4) BS04 MG ? GO:0002181 ... P60405 25306919
    299844 4w2f:DD (2.4) BS05 MG ? GO:0002181 ... P60405 25306919
    299845 4w2f:DE (2.4) BS01 rna ? GO:0003735 ... Q5SHN8 25306919
    299846 4w2f:DE (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 25306919
    299847 4w2f:DF (2.4) BS01 rna ? GO:0003735 ... Q5SHN9 25306919
    299848 4w2f:DF (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 25306919
    299849 4w2f:DF (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 25306919
    299850 4w2f:DF (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 25306919
    299851 4w2f:DG (2.4) BS01 rna ? GO:0000049 ... Q5SHQ0 25306919
    299852 4w2f:DG (2.4) BS02 rna ? GO:0000049 ... Q5SHQ0 25306919
    299853 4w2f:DG (2.4) BS03 rna ? GO:0000049 ... Q5SHQ0 25306919
    299854 4w2f:DG (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 25306919
    299855 4w2f:DH (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    299856 4w2f:DI (2.4) BS01 rna ? GO:0003735 ... Q5SLQ1 25306919
    299857 4w2f:DN (2.4) BS01 rna ? GO:0003729 ... P60488 25306919
    299858 4w2f:DO (2.4) BS01 rna ? GO:0003735 ... Q5SHP8 25306919
    299859 4w2f:DO (2.4) BS02 rna ? GO:0003735 ... Q5SHP8 25306919
    299860 4w2f:DP (2.4) BS01 rna ? GO:0003735 ... Q5SHQ7 25306919
    299861 4w2f:DQ (2.4) BS01 rna ? GO:0000049 ... P60489 25306919
    299862 4w2f:DQ (2.4) BS02 rna ? GO:0000049 ... P60489 25306919
    299863 4w2f:DQ (2.4) BS03 rna ? GO:0000049 ... P60489 25306919
    299864 4w2f:DQ (2.4) BS04 MG ? GO:0000049 ... P60489 25306919
    299865 4w2f:DQ (2.4) BS05 MG ? GO:0000049 ... P60489 25306919
    299866 4w2f:DQ (2.4) BS06 MG ? GO:0000049 ... P60489 25306919
    299867 4w2f:DR (2.4) BS01 rna ? GO:0003735 ... Q9Z9H5 25306919
    299868 4w2f:DS (2.4) BS01 rna ? GO:0003735 ... Q5SHQ4 25306919
    299869 4w2f:DS (2.4) BS02 rna ? GO:0003735 ... Q5SHQ4 25306919
    299870 4w2f:DT (2.4) BS01 rna ? GO:0003735 ... P60490 25306919
    299871 4w2f:DT (2.4) BS02 rna ? GO:0003735 ... P60490 25306919
    299872 4w2f:DU (2.4) BS01 rna ? GO:0000027 ... P60491 25306919
    299873 4w2f:DU (2.4) BS02 MG ? GO:0000027 ... P60491 25306919
    299874 4w2f:DU (2.4) BS03 MG ? GO:0000027 ... P60491 25306919
    299875 4w2f:DU (2.4) BS04 MG ? GO:0000027 ... P60491 25306919
    299876 4w2f:DV (2.4) BS01 rna ? GO:0003723 ... P60492 25306919
    299877 4w2f:DV (2.4) BS02 MG ? GO:0003723 ... P60492 25306919
    299878 4w2f:DV (2.4) BS03 MG ? GO:0003723 ... P60492 25306919
    299879 4w2f:DV (2.4) BS04 MG ? GO:0003723 ... P60492 25306919
    299880 4w2f:DW (2.4) BS01 rna ? GO:0003735 ... Q5SHP3 25306919
    299881 4w2f:DW (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 25306919
    299882 4w2f:DX (2.4) BS01 rna ? GO:0003735 ... Q5SHP0 25306919
    299883 4w2f:DX (2.4) BS02 MG ? GO:0003735 ... Q5SHP0 25306919
    299884 4w2f:DY (2.4) BS01 rna ? GO:0003723 ... Q5SHP9 25306919
    299885 4w2f:DY (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 25306919
    299886 4w2f:DZ (2.4) BS01 rna ? GO:0003723 ... Q5SHZ1 25306919
    299887 4w2f:DZ (2.4) BS02 rna ? GO:0003723 ... Q5SHZ1 25306919
    299888 4w2g:AB (2.55) BS01 rna ? GO:0003735 ... P80371 25306919
    299889 4w2g:AC (2.55) BS01 rna ? GO:0003676 ... P80372 25306919
    299890 4w2g:AD (2.55) BS01 rna ? GO:0003723 ... P80373 25306919
    299891 4w2g:AD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25306919
    299892 4w2g:AE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    299893 4w2g:AE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    299894 4w2g:AE (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 25306919
    299895 4w2g:AF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    299896 4w2g:AG (2.55) BS01 rna ? GO:0000049 ... P17291 25306919
    299897 4w2g:AG (2.55) BS02 rna ? GO:0000049 ... P17291 25306919
    299898 4w2g:AH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    299899 4w2g:AI (2.55) BS01 rna ? GO:0000049 ... P80374 25306919
    299900 4w2g:AI (2.55) BS02 rna ? GO:0000049 ... P80374 25306919
    299901 4w2g:AJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    299902 4w2g:AK (2.55) BS01 rna ? GO:0003735 ... P80376 25306919
    299903 4w2g:AK (2.55) BS02 MG ? GO:0003735 ... P80376 25306919
    299904 4w2g:AL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    299905 4w2g:AL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25306919
    299906 4w2g:AM (2.55) BS01 rna ? GO:0000049 ... P80377 25306919
    299907 4w2g:AM (2.55) BS02 rna ? GO:0000049 ... P80377 25306919
    299908 4w2g:AM (2.55) BS03 rna ? GO:0000049 ... P80377 25306919
    299909 4w2g:AM (2.55) BS04 rna ? GO:0000049 ... P80377 25306919
    299910 4w2g:AM (2.55) BS05 MG ? GO:0000049 ... P80377 25306919
    299911 4w2g:AN (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    299912 4w2g:AN (2.55) BS02 ZN N/A GO:0003735 ... N/A 25306919
    299913 4w2g:AO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    299914 4w2g:AO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    299915 4w2g:AP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    299916 4w2g:AQ (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    299917 4w2g:AR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    299918 4w2g:AS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    299919 4w2g:AS (2.55) BS02 MG ? GO:0000028 ... Q5SHP2 25306919
    299920 4w2g:AT (2.55) BS01 rna ? GO:0003723 ... P80380 25306919
    299921 4w2g:B0 (2.55) BS01 rna ? GO:0003735 ... P60493 25306919
    299922 4w2g:B0 (2.55) BS02 rna ? GO:0003735 ... P60493 25306919
    299923 4w2g:B0 (2.55) BS03 MG ? GO:0003735 ... P60493 25306919
    299924 4w2g:B1 (2.55) BS01 rna ? GO:0003735 ... P60494 25306919
    299925 4w2g:B1 (2.55) BS02 rna ? GO:0003735 ... P60494 25306919
    299926 4w2g:B1 (2.55) BS03 MG ? GO:0003735 ... P60494 25306919
    299927 4w2g:B2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    299928 4w2g:B3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    299929 4w2g:B3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    299930 4w2g:B4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    299931 4w2g:B4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    299932 4w2g:B5 (2.55) BS01 rna ? GO:0003735 ... P80339 25306919
    299933 4w2g:B5 (2.55) BS02 MG ? GO:0003735 ... P80339 25306919
    299934 4w2g:B5 (2.55) BS03 ZN ? GO:0003735 ... P80339 25306919
    299935 4w2g:B6 (2.55) BS01 rna ? GO:0000049 ... P35871 25306919
    299936 4w2g:B6 (2.55) BS02 MG ? GO:0000049 ... P35871 25306919
    299937 4w2g:B6 (2.55) BS03 MG ? GO:0000049 ... P35871 25306919
    299938 4w2g:B6 (2.55) BS04 ZN ? GO:0000049 ... P35871 25306919
    299939 4w2g:B7 (2.55) BS01 rna ? GO:0003735 ... P80340 25306919
    299940 4w2g:B7 (2.55) BS02 MG ? GO:0003735 ... P80340 25306919
    299941 4w2g:B7 (2.55) BS03 MG ? GO:0003735 ... P80340 25306919
    299942 4w2g:B8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    299943 4w2g:B8 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 25306919
    299944 4w2g:B9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    299945 4w2g:B9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    299946 4w2g:BD (2.55) BS01 rna ? GO:0002181 ... P60405 25306919
    299947 4w2g:BD (2.55) BS02 rna ? GO:0002181 ... P60405 25306919
    299948 4w2g:BD (2.55) BS03 MG ? GO:0002181 ... P60405 25306919
    299949 4w2g:BD (2.55) BS04 MG ? GO:0002181 ... P60405 25306919
    299950 4w2g:BD (2.55) BS05 MG ? GO:0002181 ... P60405 25306919
    299951 4w2g:BD (2.55) BS06 MG ? GO:0002181 ... P60405 25306919
    299952 4w2g:BD (2.55) BS07 MG ? GO:0002181 ... P60405 25306919
    299953 4w2g:BD (2.55) BS08 MG ? GO:0002181 ... P60405 25306919
    299954 4w2g:BD (2.55) BS09 MG ? GO:0002181 ... P60405 25306919
    299955 4w2g:BD (2.55) BS10 MG ? GO:0002181 ... P60405 25306919
    299956 4w2g:BD (2.55) BS11 MG ? GO:0002181 ... P60405 25306919
    299957 4w2g:BD (2.55) BS12 MG ? GO:0002181 ... P60405 25306919
    299958 4w2g:BD (2.55) BS13 MG ? GO:0002181 ... P60405 25306919
    299959 4w2g:BE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25306919
    299960 4w2g:BE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25306919
    299961 4w2g:BE (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 25306919
    299962 4w2g:BE (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 25306919
    299963 4w2g:BE (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 25306919
    299964 4w2g:BF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25306919
    299965 4w2g:BF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25306919
    299966 4w2g:BF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25306919
    299967 4w2g:BF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25306919
    299968 4w2g:BF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25306919
    299969 4w2g:BF (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 25306919
    299970 4w2g:BF (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 25306919
    299971 4w2g:BF (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 25306919
    299972 4w2g:BF (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 25306919
    299973 4w2g:BF (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 25306919
    299974 4w2g:BG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25306919
    299975 4w2g:BG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25306919
    299976 4w2g:BG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25306919
    299977 4w2g:BG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25306919
    299978 4w2g:BH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    299979 4w2g:BI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25306919
    299980 4w2g:BN (2.55) BS01 rna ? GO:0003729 ... P60488 25306919
    299981 4w2g:BN (2.55) BS02 MG ? GO:0003729 ... P60488 25306919
    299982 4w2g:BN (2.55) BS03 MG ? GO:0003729 ... P60488 25306919
    299983 4w2g:BN (2.55) BS04 MG ? GO:0003729 ... P60488 25306919
    299984 4w2g:BN (2.55) BS05 MG ? GO:0003729 ... P60488 25306919
    299985 4w2g:BO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25306919
    299986 4w2g:BO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25306919
    299987 4w2g:BP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25306919
    299988 4w2g:BP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25306919
    299989 4w2g:BP (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 25306919
    299990 4w2g:BQ (2.55) BS01 rna ? GO:0000049 ... P60489 25306919
    299991 4w2g:BQ (2.55) BS02 rna ? GO:0000049 ... P60489 25306919
    299992 4w2g:BQ (2.55) BS03 rna ? GO:0000049 ... P60489 25306919
    299993 4w2g:BQ (2.55) BS04 MG ? GO:0000049 ... P60489 25306919
    299994 4w2g:BQ (2.55) BS05 MG ? GO:0000049 ... P60489 25306919
    299995 4w2g:BQ (2.55) BS06 MG ? GO:0000049 ... P60489 25306919
    299996 4w2g:BQ (2.55) BS07 MG ? GO:0000049 ... P60489 25306919
    299997 4w2g:BR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25306919
    299998 4w2g:BR (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 25306919
    299999 4w2g:BR (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 25306919
    300000 4w2g:BS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25306919

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).