SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    300001 4w2g:BS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25306919
    300002 4w2g:BT (2.55) BS01 rna ? GO:0003735 ... P60490 25306919
    300003 4w2g:BT (2.55) BS02 rna ? GO:0003735 ... P60490 25306919
    300004 4w2g:BU (2.55) BS01 rna ? GO:0000027 ... P60491 25306919
    300005 4w2g:BU (2.55) BS02 MG ? GO:0000027 ... P60491 25306919
    300006 4w2g:BU (2.55) BS03 MG ? GO:0000027 ... P60491 25306919
    300007 4w2g:BU (2.55) BS04 MG ? GO:0000027 ... P60491 25306919
    300008 4w2g:BU (2.55) BS05 MG ? GO:0000027 ... P60491 25306919
    300009 4w2g:BU (2.55) BS06 MG ? GO:0000027 ... P60491 25306919
    300010 4w2g:BU (2.55) BS07 MG ? GO:0000027 ... P60491 25306919
    300011 4w2g:BU (2.55) BS08 MG ? GO:0000027 ... P60491 25306919
    300012 4w2g:BU (2.55) BS09 MG ? GO:0000027 ... P60491 25306919
    300013 4w2g:BV (2.55) BS01 rna ? GO:0003723 ... P60492 25306919
    300014 4w2g:BV (2.55) BS02 MG ? GO:0003723 ... P60492 25306919
    300015 4w2g:BV (2.55) BS03 MG ? GO:0003723 ... P60492 25306919
    300016 4w2g:BV (2.55) BS04 MG ? GO:0003723 ... P60492 25306919
    300017 4w2g:BV (2.55) BS05 MG ? GO:0003723 ... P60492 25306919
    300018 4w2g:BW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25306919
    300019 4w2g:BW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25306919
    300020 4w2g:BW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25306919
    300021 4w2g:BX (2.55) BS01 rna ? GO:0003735 ... Q5SHP0 25306919
    300022 4w2g:BX (2.55) BS02 MG ? GO:0003735 ... Q5SHP0 25306919
    300023 4w2g:BX (2.55) BS03 MG ? GO:0003735 ... Q5SHP0 25306919
    300024 4w2g:BY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25306919
    300025 4w2g:BY (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 25306919
    300026 4w2g:BY (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 25306919
    300027 4w2g:BZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25306919
    300028 4w2g:BZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25306919
    300029 4w2g:CB (2.55) BS01 rna ? GO:0003735 ... P80371 25306919
    300030 4w2g:CC (2.55) BS01 rna ? GO:0003676 ... P80372 25306919
    300031 4w2g:CD (2.55) BS01 rna ? GO:0003723 ... P80373 25306919
    300032 4w2g:CD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25306919
    300033 4w2g:CE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    300034 4w2g:CE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    300035 4w2g:CF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    300036 4w2g:CF (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 25306919
    300037 4w2g:CG (2.55) BS01 rna ? GO:0000049 ... P17291 25306919
    300038 4w2g:CG (2.55) BS02 rna ? GO:0000049 ... P17291 25306919
    300039 4w2g:CH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    300040 4w2g:CI (2.55) BS01 rna ? GO:0000049 ... P80374 25306919
    300041 4w2g:CI (2.55) BS02 rna ? GO:0000049 ... P80374 25306919
    300042 4w2g:CJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    300043 4w2g:CK (2.55) BS01 rna ? GO:0003735 ... P80376 25306919
    300044 4w2g:CK (2.55) BS02 MG ? GO:0003735 ... P80376 25306919
    300045 4w2g:CL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    300046 4w2g:CL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25306919
    300047 4w2g:CM (2.55) BS01 rna ? GO:0000049 ... P80377 25306919
    300048 4w2g:CM (2.55) BS02 rna ? GO:0000049 ... P80377 25306919
    300049 4w2g:CM (2.55) BS03 rna ? GO:0000049 ... P80377 25306919
    300050 4w2g:CN (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    300051 4w2g:CN (2.55) BS02 ZN N/A GO:0003735 ... N/A 25306919
    300052 4w2g:CO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    300053 4w2g:CO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    300054 4w2g:CP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    300055 4w2g:CQ (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    300056 4w2g:CR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    300057 4w2g:CS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    300058 4w2g:CT (2.55) BS01 rna ? GO:0003723 ... P80380 25306919
    300059 4w2g:CT (2.55) BS02 MG ? GO:0003723 ... P80380 25306919
    300060 4w2g:D0 (2.55) BS01 rna ? GO:0003735 ... P60493 25306919
    300061 4w2g:D0 (2.55) BS02 rna ? GO:0003735 ... P60493 25306919
    300062 4w2g:D1 (2.55) BS01 rna ? GO:0003735 ... P60494 25306919
    300063 4w2g:D1 (2.55) BS02 rna ? GO:0003735 ... P60494 25306919
    300064 4w2g:D2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    300065 4w2g:D3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    300066 4w2g:D3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    300067 4w2g:D3 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 25306919
    300068 4w2g:D4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    300069 4w2g:D4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    300070 4w2g:D5 (2.55) BS01 rna ? GO:0003735 ... P80339 25306919
    300071 4w2g:D5 (2.55) BS02 ZN ? GO:0003735 ... P80339 25306919
    300072 4w2g:D6 (2.55) BS01 rna ? GO:0000049 ... P35871 25306919
    300073 4w2g:D6 (2.55) BS02 ZN ? GO:0000049 ... P35871 25306919
    300074 4w2g:D7 (2.55) BS01 rna ? GO:0003735 ... P80340 25306919
    300075 4w2g:D7 (2.55) BS02 MG ? GO:0003735 ... P80340 25306919
    300076 4w2g:D7 (2.55) BS03 MG ? GO:0003735 ... P80340 25306919
    300077 4w2g:D8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    300078 4w2g:D9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    300079 4w2g:D9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    300080 4w2g:DD (2.55) BS01 rna ? GO:0002181 ... P60405 25306919
    300081 4w2g:DD (2.55) BS02 rna ? GO:0002181 ... P60405 25306919
    300082 4w2g:DD (2.55) BS03 MG ? GO:0002181 ... P60405 25306919
    300083 4w2g:DD (2.55) BS04 MG ? GO:0002181 ... P60405 25306919
    300084 4w2g:DD (2.55) BS05 MG ? GO:0002181 ... P60405 25306919
    300085 4w2g:DD (2.55) BS06 MG ? GO:0002181 ... P60405 25306919
    300086 4w2g:DD (2.55) BS07 MG ? GO:0002181 ... P60405 25306919
    300087 4w2g:DD (2.55) BS08 MG ? GO:0002181 ... P60405 25306919
    300088 4w2g:DE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25306919
    300089 4w2g:DE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25306919
    300090 4w2g:DE (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 25306919
    300091 4w2g:DF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25306919
    300092 4w2g:DF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25306919
    300093 4w2g:DF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25306919
    300094 4w2g:DF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25306919
    300095 4w2g:DF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25306919
    300096 4w2g:DG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25306919
    300097 4w2g:DG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25306919
    300098 4w2g:DG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25306919
    300099 4w2g:DG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25306919
    300100 4w2g:DH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    300101 4w2g:DI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25306919
    300102 4w2g:DN (2.55) BS01 rna ? GO:0003729 ... P60488 25306919
    300103 4w2g:DO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25306919
    300104 4w2g:DO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25306919
    300105 4w2g:DP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25306919
    300106 4w2g:DQ (2.55) BS01 rna ? GO:0000049 ... P60489 25306919
    300107 4w2g:DQ (2.55) BS02 rna ? GO:0000049 ... P60489 25306919
    300108 4w2g:DQ (2.55) BS03 rna ? GO:0000049 ... P60489 25306919
    300109 4w2g:DQ (2.55) BS04 MG ? GO:0000049 ... P60489 25306919
    300110 4w2g:DQ (2.55) BS05 MG ? GO:0000049 ... P60489 25306919
    300111 4w2g:DQ (2.55) BS06 MG ? GO:0000049 ... P60489 25306919
    300112 4w2g:DR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25306919
    300113 4w2g:DS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25306919
    300114 4w2g:DS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25306919
    300115 4w2g:DT (2.55) BS01 rna ? GO:0003735 ... P60490 25306919
    300116 4w2g:DT (2.55) BS02 rna ? GO:0003735 ... P60490 25306919
    300117 4w2g:DU (2.55) BS01 rna ? GO:0000027 ... P60491 25306919
    300118 4w2g:DU (2.55) BS02 MG ? GO:0000027 ... P60491 25306919
    300119 4w2g:DU (2.55) BS03 MG ? GO:0000027 ... P60491 25306919
    300120 4w2g:DU (2.55) BS04 MG ? GO:0000027 ... P60491 25306919
    300121 4w2g:DV (2.55) BS01 rna ? GO:0003723 ... P60492 25306919
    300122 4w2g:DV (2.55) BS02 MG ? GO:0003723 ... P60492 25306919
    300123 4w2g:DV (2.55) BS03 MG ? GO:0003723 ... P60492 25306919
    300124 4w2g:DV (2.55) BS04 MG ? GO:0003723 ... P60492 25306919
    300125 4w2g:DW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25306919
    300126 4w2g:DW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25306919
    300127 4w2g:DW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25306919
    300128 4w2g:DX (2.55) BS01 rna ? GO:0003735 ... Q5SHP0 25306919
    300129 4w2g:DY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25306919
    300130 4w2g:DY (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 25306919
    300131 4w2g:DZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25306919
    300132 4w2g:DZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25306919
    300133 4w2h:AB (2.7) BS01 rna ? GO:0003735 ... P80371 25306919
    300134 4w2h:AC (2.7) BS01 rna ? GO:0003676 ... P80372 25306919
    300135 4w2h:AD (2.7) BS01 rna ? GO:0003723 ... P80373 25306919
    300136 4w2h:AD (2.7) BS02 SF4 ? GO:0003723 ... P80373 25306919
    300137 4w2h:AE (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    300138 4w2h:AE (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    300139 4w2h:AE (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 25306919
    300140 4w2h:AF (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    300141 4w2h:AG (2.7) BS01 rna ? GO:0000049 ... P17291 25306919
    300142 4w2h:AH (2.7) BS01 rna N/A GO:0003735 ... N/A 25306919
    300143 4w2h:AI (2.7) BS01 rna ? GO:0000049 ... P80374 25306919
    300144 4w2h:AI (2.7) BS02 rna ? GO:0000049 ... P80374 25306919
    300145 4w2h:AJ (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    300146 4w2h:AK (2.7) BS01 rna ? GO:0003735 ... P80376 25306919
    300147 4w2h:AK (2.7) BS02 MG ? GO:0003735 ... P80376 25306919
    300148 4w2h:AL (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    300149 4w2h:AM (2.7) BS01 rna ? GO:0000049 ... P80377 25306919
    300150 4w2h:AM (2.7) BS02 rna ? GO:0000049 ... P80377 25306919
    300151 4w2h:AM (2.7) BS03 MG ? GO:0000049 ... P80377 25306919
    300152 4w2h:AN (2.7) BS01 rna N/A GO:0003735 ... N/A 25306919
    300153 4w2h:AN (2.7) BS02 ZN N/A GO:0003735 ... N/A 25306919
    300154 4w2h:AO (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    300155 4w2h:AO (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    300156 4w2h:AP (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    300157 4w2h:AQ (2.7) BS01 rna N/A GO:0003735 ... N/A 25306919
    300158 4w2h:AR (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    300159 4w2h:AS (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    300160 4w2h:AT (2.7) BS01 rna ? GO:0003723 ... P80380 25306919
    300161 4w2h:B0 (2.7) BS01 rna ? GO:0003735 ... P60493 25306919
    300162 4w2h:B0 (2.7) BS02 rna ? GO:0003735 ... P60493 25306919
    300163 4w2h:B0 (2.7) BS03 MG ? GO:0003735 ... P60493 25306919
    300164 4w2h:B1 (2.7) BS01 rna ? GO:0003735 ... P60494 25306919
    300165 4w2h:B2 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    300166 4w2h:B3 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    300167 4w2h:B3 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    300168 4w2h:B3 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 25306919
    300169 4w2h:B3 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 25306919
    300170 4w2h:B4 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    300171 4w2h:B4 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    300172 4w2h:B5 (2.7) BS01 rna ? GO:0003735 ... P80339 25306919
    300173 4w2h:B5 (2.7) BS02 MG ? GO:0003735 ... P80339 25306919
    300174 4w2h:B5 (2.7) BS03 MG ? GO:0003735 ... P80339 25306919
    300175 4w2h:B5 (2.7) BS04 MG ? GO:0003735 ... P80339 25306919
    300176 4w2h:B5 (2.7) BS05 ZN ? GO:0003735 ... P80339 25306919
    300177 4w2h:B6 (2.7) BS01 rna ? GO:0000049 ... P35871 25306919
    300178 4w2h:B6 (2.7) BS02 MG ? GO:0000049 ... P35871 25306919
    300179 4w2h:B6 (2.7) BS03 ZN ? GO:0000049 ... P35871 25306919
    300180 4w2h:B7 (2.7) BS01 rna ? GO:0003735 ... P80340 25306919
    300181 4w2h:B7 (2.7) BS02 MG ? GO:0003735 ... P80340 25306919
    300182 4w2h:B7 (2.7) BS03 MG ? GO:0003735 ... P80340 25306919
    300183 4w2h:B7 (2.7) BS04 MG ? GO:0003735 ... P80340 25306919
    300184 4w2h:B8 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    300185 4w2h:B8 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 25306919
    300186 4w2h:B9 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    300187 4w2h:B9 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    300188 4w2h:BD (2.7) BS01 rna ? GO:0002181 ... P60405 25306919
    300189 4w2h:BD (2.7) BS02 rna ? GO:0002181 ... P60405 25306919
    300190 4w2h:BD (2.7) BS03 MG ? GO:0002181 ... P60405 25306919
    300191 4w2h:BD (2.7) BS04 MG ? GO:0002181 ... P60405 25306919
    300192 4w2h:BD (2.7) BS05 MG ? GO:0002181 ... P60405 25306919
    300193 4w2h:BD (2.7) BS06 MG ? GO:0002181 ... P60405 25306919
    300194 4w2h:BD (2.7) BS07 MG ? GO:0002181 ... P60405 25306919
    300195 4w2h:BD (2.7) BS08 MG ? GO:0002181 ... P60405 25306919
    300196 4w2h:BD (2.7) BS09 MG ? GO:0002181 ... P60405 25306919
    300197 4w2h:BD (2.7) BS10 MG ? GO:0002181 ... P60405 25306919
    300198 4w2h:BD (2.7) BS11 MG ? GO:0002181 ... P60405 25306919
    300199 4w2h:BD (2.7) BS12 MG ? GO:0002181 ... P60405 25306919
    300200 4w2h:BE (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 25306919

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).