SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    300601 4w2i:DW (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 25306922
    300602 4w2i:DX (2.7) BS01 rna ? GO:0005840 ... Q5SHP0 25306922
    300603 4w2i:DY (2.7) BS01 rna ? GO:0005840 ... Q5SHP9 25306922
    300604 4w2i:DY (2.7) BS02 ZN ? GO:0005840 ... Q5SHP9 25306922
    300605 4w2i:DZ (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 25306922
    300606 4w2i:DZ (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 25306922
    300607 4w2r:A (2.81) BS01 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300608 4w2r:A (2.81) BS02 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300609 4w2r:A (2.81) BS03 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300610 4w2r:A (2.81) BS04 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300611 4w2r:A (2.81) BS05 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300612 4w2r:A (2.81) BS06 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300613 4w2r:A (2.81) BS07 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300614 4w2r:A (2.81) BS08 CJD 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300615 4w2r:B (2.81) BS01 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300616 4w2r:B (2.81) BS02 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300617 4w2r:B (2.81) BS03 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300618 4w2r:B (2.81) BS04 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300619 4w2r:B (2.81) BS05 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300620 4w2r:B (2.81) BS06 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300621 4w2r:B (2.81) BS07 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300622 4w2r:B (2.81) BS08 CJD 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    300623 4w4g:QB (3.3) BS01 rna ? GO:0003735 ... P80371 26508639
    300624 4w4g:QC (3.3) BS01 rna ? GO:0003676 ... P80372 26508639
    300625 4w4g:QD (3.3) BS01 rna ? GO:0003723 ... P80373 26508639
    300626 4w4g:QE (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26508639
    300627 4w4g:QF (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26508639
    300628 4w4g:QG (3.3) BS01 rna ? GO:0000049 ... P17291 26508639
    300629 4w4g:QG (3.3) BS02 rna ? GO:0000049 ... P17291 26508639
    300630 4w4g:QH (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    300631 4w4g:QI (3.3) BS01 rna ? GO:0000049 ... P80374 26508639
    300632 4w4g:QI (3.3) BS02 rna ? GO:0000049 ... P80374 26508639
    300633 4w4g:QJ (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26508639
    300634 4w4g:QK (3.3) BS01 rna ? GO:0003735 ... P80376 26508639
    300635 4w4g:QK (3.3) BS02 MG ? GO:0003735 ... P80376 26508639
    300636 4w4g:QL (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26508639
    300637 4w4g:QL (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 26508639
    300638 4w4g:QM (3.3) BS01 rna ? GO:0000049 ... P80377 26508639
    300639 4w4g:QN (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    300640 4w4g:QN (3.3) BS02 ZN N/A GO:0003735 ... N/A 26508639
    300641 4w4g:QO (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26508639
    300642 4w4g:QO (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26508639
    300643 4w4g:QP (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26508639
    300644 4w4g:QQ (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    300645 4w4g:QR (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26508639
    300646 4w4g:QS (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26508639
    300647 4w4g:QT (3.3) BS01 rna ? GO:0003723 ... P80380 26508639
    300648 4w4g:QY (3.3) BS01 rna 3.1.-.- GO:0003723 ... Q7A225 26508639
    300649 4w4g:QY (3.3) BS02 rna 3.1.-.- GO:0003723 ... Q7A225 26508639
    300650 4w4g:R0 (3.3) BS01 rna ? GO:0003735 ... P60493 26508639
    300651 4w4g:R0 (3.3) BS02 rna ? GO:0003735 ... P60493 26508639
    300652 4w4g:R1 (3.3) BS01 rna ? GO:0003735 ... P60494 26508639
    300653 4w4g:R1 (3.3) BS02 rna ? GO:0003735 ... P60494 26508639
    300654 4w4g:R2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26508639
    300655 4w4g:R3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26508639
    300656 4w4g:R3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26508639
    300657 4w4g:R4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26508639
    300658 4w4g:R4 (3.3) BS02 rna ? GO:0003735 ... Q5SJE1 26508639
    300659 4w4g:R5 (3.3) BS01 rna ? GO:0003735 ... P80339 26508639
    300660 4w4g:R5 (3.3) BS02 MG ? GO:0003735 ... P80339 26508639
    300661 4w4g:R6 (3.3) BS01 rna ? GO:0000049 ... P35871 26508639
    300662 4w4g:R7 (3.3) BS01 rna ? GO:0003735 ... P80340 26508639
    300663 4w4g:R8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26508639
    300664 4w4g:R9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 26508639
    300665 4w4g:RD (3.3) BS01 rna ? GO:0002181 ... P60405 26508639
    300666 4w4g:RD (3.3) BS02 rna ? GO:0002181 ... P60405 26508639
    300667 4w4g:RE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26508639
    300668 4w4g:RF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26508639
    300669 4w4g:RG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26508639
    300670 4w4g:RG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26508639
    300671 4w4g:RG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26508639
    300672 4w4g:RH (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    300673 4w4g:RI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26508639
    300674 4w4g:RN (3.3) BS01 rna ? GO:0003729 ... P60488 26508639
    300675 4w4g:RO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26508639
    300676 4w4g:RO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26508639
    300677 4w4g:RP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26508639
    300678 4w4g:RP (3.3) BS02 MG ? GO:0003735 ... Q5SHQ7 26508639
    300679 4w4g:RQ (3.3) BS01 rna ? GO:0000049 ... P60489 26508639
    300680 4w4g:RQ (3.3) BS02 rna ? GO:0000049 ... P60489 26508639
    300681 4w4g:RQ (3.3) BS03 MG ? GO:0000049 ... P60489 26508639
    300682 4w4g:RR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26508639
    300683 4w4g:RS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26508639
    300684 4w4g:RS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26508639
    300685 4w4g:RT (3.3) BS01 rna ? GO:0003735 ... P60490 26508639
    300686 4w4g:RT (3.3) BS02 rna ? GO:0003735 ... P60490 26508639
    300687 4w4g:RU (3.3) BS01 rna ? GO:0000027 ... P60491 26508639
    300688 4w4g:RV (3.3) BS01 rna ? GO:0003723 ... P60492 26508639
    300689 4w4g:RW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26508639
    300690 4w4g:RX (3.3) BS01 rna ? GO:0003735 ... Q5SHP0 26508639
    300691 4w4g:RY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26508639
    300692 4w4g:RZ (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26508639
    300693 4w4g:RZ (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 26508639
    300694 4w4g:XB (3.3) BS01 rna ? GO:0003735 ... P80371 26508639
    300695 4w4g:XC (3.3) BS01 rna ? GO:0003676 ... P80372 26508639
    300696 4w4g:XD (3.3) BS01 rna ? GO:0003723 ... P80373 26508639
    300697 4w4g:XD (3.3) BS02 MG ? GO:0003723 ... P80373 26508639
    300698 4w4g:XE (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26508639
    300699 4w4g:XF (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26508639
    300700 4w4g:XF (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 26508639
    300701 4w4g:XG (3.3) BS01 rna ? GO:0000049 ... P17291 26508639
    300702 4w4g:XG (3.3) BS02 rna ? GO:0000049 ... P17291 26508639
    300703 4w4g:XH (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    300704 4w4g:XI (3.3) BS01 rna ? GO:0000049 ... P80374 26508639
    300705 4w4g:XI (3.3) BS02 rna ? GO:0000049 ... P80374 26508639
    300706 4w4g:XJ (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26508639
    300707 4w4g:XK (3.3) BS01 rna ? GO:0003735 ... P80376 26508639
    300708 4w4g:XK (3.3) BS02 MG ? GO:0003735 ... P80376 26508639
    300709 4w4g:XL (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26508639
    300710 4w4g:XL (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 26508639
    300711 4w4g:XM (3.3) BS01 rna ? GO:0000049 ... P80377 26508639
    300712 4w4g:XM (3.3) BS02 MG ? GO:0000049 ... P80377 26508639
    300713 4w4g:XN (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    300714 4w4g:XN (3.3) BS02 ZN N/A GO:0003735 ... N/A 26508639
    300715 4w4g:XN (3.3) BS03 MG N/A GO:0003735 ... N/A 26508639
    300716 4w4g:XO (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26508639
    300717 4w4g:XO (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26508639
    300718 4w4g:XP (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26508639
    300719 4w4g:XQ (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    300720 4w4g:XR (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26508639
    300721 4w4g:XS (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26508639
    300722 4w4g:XT (3.3) BS01 rna ? GO:0003723 ... P80380 26508639
    300723 4w4g:XY (3.3) BS01 rna 3.1.-.- GO:0003723 ... Q7A225 26508639
    300724 4w4g:XY (3.3) BS02 rna 3.1.-.- GO:0003723 ... Q7A225 26508639
    300725 4w4g:Y0 (3.3) BS01 rna ? GO:0003735 ... P60493 26508639
    300726 4w4g:Y0 (3.3) BS02 rna ? GO:0003735 ... P60493 26508639
    300727 4w4g:Y0 (3.3) BS03 rna ? GO:0003735 ... P60493 26508639
    300728 4w4g:Y1 (3.3) BS01 rna ? GO:0003735 ... P60494 26508639
    300729 4w4g:Y2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26508639
    300730 4w4g:Y3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26508639
    300731 4w4g:Y3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26508639
    300732 4w4g:Y4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26508639
    300733 4w4g:Y4 (3.3) BS02 rna ? GO:0003735 ... Q5SJE1 26508639
    300734 4w4g:Y5 (3.3) BS01 rna ? GO:0003735 ... P80339 26508639
    300735 4w4g:Y6 (3.3) BS01 rna ? GO:0000049 ... P35871 26508639
    300736 4w4g:Y7 (3.3) BS01 rna ? GO:0003735 ... P80340 26508639
    300737 4w4g:Y8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26508639
    300738 4w4g:Y9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 26508639
    300739 4w4g:YD (3.3) BS01 rna ? GO:0002181 ... P60405 26508639
    300740 4w4g:YE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26508639
    300741 4w4g:YF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26508639
    300742 4w4g:YF (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 26508639
    300743 4w4g:YG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26508639
    300744 4w4g:YG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26508639
    300745 4w4g:YG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26508639
    300746 4w4g:YG (3.3) BS04 MG ? GO:0000049 ... Q5SHQ0 26508639
    300747 4w4g:YH (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    300748 4w4g:YH (3.3) BS02 MG N/A GO:0003735 ... N/A 26508639
    300749 4w4g:YI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26508639
    300750 4w4g:YI (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 26508639
    300751 4w4g:YN (3.3) BS01 rna ? GO:0003729 ... P60488 26508639
    300752 4w4g:YN (3.3) BS02 MG ? GO:0003729 ... P60488 26508639
    300753 4w4g:YO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26508639
    300754 4w4g:YO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26508639
    300755 4w4g:YP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26508639
    300756 4w4g:YQ (3.3) BS01 rna ? GO:0000049 ... P60489 26508639
    300757 4w4g:YQ (3.3) BS02 rna ? GO:0000049 ... P60489 26508639
    300758 4w4g:YR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26508639
    300759 4w4g:YS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26508639
    300760 4w4g:YS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26508639
    300761 4w4g:YT (3.3) BS01 rna ? GO:0003735 ... P60490 26508639
    300762 4w4g:YT (3.3) BS02 rna ? GO:0003735 ... P60490 26508639
    300763 4w4g:YU (3.3) BS01 rna ? GO:0000027 ... P60491 26508639
    300764 4w4g:YV (3.3) BS01 rna ? GO:0003723 ... P60492 26508639
    300765 4w4g:YW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26508639
    300766 4w4g:YX (3.3) BS01 rna ? GO:0003735 ... Q5SHP0 26508639
    300767 4w4g:YY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26508639
    300768 4w4g:YZ (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26508639
    300769 4w4g:YZ (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 26508639
    300770 4w4n:B (1.8) BS01 BMA ? N/A P01857 25925696
    300771 4w4o:A (1.8) BS01 BMA ? N/A P01857 25925696
    300772 4w4o:A (1.8) BS02 GAL ? N/A P01857 25925696
    300773 4w4o:A (1.8) BS03 ZN ? N/A P01857 25925696
    300774 4w4o:B (1.8) BS01 BMA ? N/A P01857 25925696
    300775 4w4o:B (1.8) BS02 GAL ? N/A P01857 25925696
    300776 4w4o:B (1.8) BS03 ZN ? N/A P01857 25925696
    300777 4w4q:A (2.0) BS01 CA 5.3.1.5 GO:0000287 ... P24300 25384243
    300778 4w4s:A (2.0) BS01 B29 ? N/A Q45222 25269599 MOAD: ic50=9.5uM
    300779 4w4u:A (2.8) BS01 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300780 4w4u:A (2.8) BS02 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300781 4w4u:A (2.8) BS03 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300782 4w4u:A (2.8) BS04 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300783 4w4u:A (2.8) BS05 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300784 4w4u:A (2.8) BS06 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300785 4w4u:D (2.8) BS01 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300786 4w4u:D (2.8) BS02 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300787 4w4u:D (2.8) BS03 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300788 4w4u:D (2.8) BS04 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300789 4w4u:D (2.8) BS05 ZN 3.4.19.12 GO:0004843 ... N1P0J5 25526805
    300790 4w4u:E (2.8) BS01 ZN ? N/A P53165 25526805
    300791 4w4u:H (2.8) BS01 ZN ? N/A P53165 25526805
    300792 4w4v:A (2.01) BS01 3H8 2.7.11.24 GO:0004672 ... P53779 25623238 MOAD: ic50=866nM
    BindingDB: IC50=866nM
    300793 4w4w:A (1.9) BS01 3HJ 2.7.11.24 GO:0004672 ... P53779 25623238 MOAD: ic50=6630nM
    300794 4w4x:A (2.65) BS01 3HN 2.7.11.24 GO:0004672 ... P53779 25623238
    300795 4w4y:A (2.3) BS01 3HQ 2.7.11.24 GO:0004672 ... P53779 25623238 MOAD: ic50=3034nM
    300796 4w4z:A (2.41) BS01 peptide 2.7.10.1 N/A P54764 25268696
    300797 4w4z:B (2.41) BS01 peptide 2.7.10.1 N/A P54764 25268696
    300798 4w4z:C (2.41) BS01 peptide 2.7.10.1 N/A P54764 25268696
    300799 4w4z:D (2.41) BS01 peptide 2.7.10.1 N/A P54764 25268696
    300800 4w50:A (2.42) BS01 peptide 2.7.10.1 N/A P54764 25268696

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).