SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    302601 4woi:CP (3.0) BS01 rna ? GO:0000027 ... P0A7K6 26224058
    302602 4woi:CP (3.0) BS02 rna ? GO:0000027 ... P0A7K6 26224058
    302603 4woi:CQ (3.0) BS01 rna ? GO:0000027 ... P0A7L3 26224058
    302604 4woi:CR (3.0) BS01 rna ? GO:0002181 ... P0AG48 26224058
    302605 4woi:CS (3.0) BS01 rna ? GO:0002181 ... P61175 26224058
    302606 4woi:CT (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 26224058
    302607 4woi:CU (3.0) BS01 rna ? GO:0000027 ... P60624 26224058
    302608 4woi:CV (3.0) BS01 rna ? GO:0000027 ... P68919 26224058
    302609 4woi:CV (3.0) BS02 rna ? GO:0000027 ... P68919 26224058
    302610 4woi:CW (3.0) BS01 rna ? GO:0000027 ... P0A7L8 26224058
    302611 4woi:CW (3.0) BS02 rna ? GO:0000027 ... P0A7L8 26224058
    302612 4woi:CX (3.0) BS01 rna ? GO:0000027 ... P0A7M2 26224058
    302613 4woi:CY (3.0) BS01 rna ? GO:0000027 ... P0A7M6 26224058
    302614 4woi:CZ (3.0) BS01 rna ? GO:0000027 ... P0AG51 26224058
    302615 4woi:CZ (3.0) BS02 rna ? GO:0000027 ... P0AG51 26224058
    302616 4woi:DB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 26224058
    302617 4woi:DB (3.0) BS02 rna ? GO:0000028 ... P0A7V0 26224058
    302618 4woi:DC (3.0) BS01 rna ? GO:0000028 ... P0A7V3 26224058
    302619 4woi:DC (3.0) BS02 rna ? GO:0000028 ... P0A7V3 26224058
    302620 4woi:DD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 26224058
    302621 4woi:DE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 26224058
    302622 4woi:DF (3.0) BS01 rna ? GO:0002181 ... P02358 26224058
    302623 4woi:DG (3.0) BS01 rna ? GO:0000028 ... P02359 26224058
    302624 4woi:DH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 26224058
    302625 4woi:DI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 26224058
    302626 4woi:DI (3.0) BS02 rna ? GO:0000049 ... P0A7X3 26224058
    302627 4woi:DJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 26224058
    302628 4woi:DK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 26224058
    302629 4woi:DL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 26224058
    302630 4woi:DM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 26224058
    302631 4woi:DN (3.0) BS01 rna ? GO:0000028 ... P0AG59 26224058
    302632 4woi:DO (3.0) BS01 rna N/A GO:0003735 ... N/A 26224058
    302633 4woi:DO (3.0) BS02 rna N/A GO:0003735 ... N/A 26224058
    302634 4woi:DP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 26224058
    302635 4woi:DQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 26224058
    302636 4woi:DR (3.0) BS01 rna ? GO:0002181 ... P0A7T7 26224058
    302637 4woi:DS (3.0) BS01 rna ? GO:0000028 ... P0A7U3 26224058
    302638 4woi:DT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 26224058
    302639 4woi:DU (3.0) BS01 rna ? GO:0000028 ... P68679 26224058
    302640 4woi:DU (3.0) BS02 rna ? GO:0000028 ... P68679 26224058
    302641 4wok:A (1.85) BS01 NAD 5.1.3.2 GO:0000166 ... A0A0H3ASR6 N/A
    302642 4wok:A (1.85) BS02 ZN 5.1.3.2 GO:0000166 ... A0A0H3ASR6 N/A
    302643 4wop:A (2.393) BS01 CTP 6.3.3.3 GO:0000287 ... P9WPQ5 25801336 MOAD: Kd=17.2uM
    302644 4wop:C (2.393) BS01 CTP 6.3.3.3 GO:0000287 ... P9WPQ5 25801336 MOAD: Kd=17.2uM
    302645 4wop:D (2.393) BS01 CTP 6.3.3.3 GO:0000287 ... P9WPQ5 25801336 MOAD: Kd=17.2uM
    302646 4woq:C (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    302647 4woq:D (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    302648 4woq:E (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    302649 4woq:F (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    302650 4woq:H (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    302651 4wor:A (1.596) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9177191
    302652 4wor:A (1.596) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9177191
    302653 4wot:A (2.93) BS01 3SG 2.7.11.1 GO:0004672 ... O75116 25898023 BindingDB: IC50=1.6nM
    302654 4wot:B (2.93) BS01 3SG 2.7.11.1 GO:0004672 ... O75116 25898023 BindingDB: IC50=1.6nM
    302655 4wot:C (2.93) BS01 3SG 2.7.11.1 GO:0004672 ... O75116 25898023 BindingDB: IC50=1.6nM
    302656 4wot:D (2.93) BS01 3SG 2.7.11.1 GO:0004672 ... O75116 25898023 BindingDB: IC50=1.6nM
    302657 4wou:A (2.122) BS01 GDP 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    302658 4wou:A (2.122) BS02 ZN 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    302659 4wov:A (1.8) BS01 3SM 2.7.10.2 GO:0004672 ... P29597 25762719 MOAD: ic50=72nM
    302660 4wov:B (1.8) BS01 3SM 2.7.10.2 GO:0004672 ... P29597 25762719 MOAD: ic50=72nM
    302661 4woz:B (1.96) BS01 MN9 4.1.3.3 GO:0005737 ... D5Q364 N/A
    302662 4woz:F (1.96) BS01 MN9 4.1.3.3 GO:0005737 ... D5Q364 N/A
    302663 4wp4:A (1.43) BS01 TOU ? GO:0008061 ... P02877 25700348
    302664 4wp7:A (1.8) BS01 3SR 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36
    GO:0000166 ... P00352 25634381 MOAD: ic50=0.8uM
    BindingDB: IC50=800nM, Ki=720nM
    302665 4wp8:A (1.65) BS01 MN 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302666 4wp8:A (1.65) BS02 ZDA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302667 4wp8:A (1.65) BS03 ZDA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302668 4wp8:B (1.65) BS01 ZDA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302669 4wp8:B (1.65) BS02 MN 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302670 4wp8:B (1.65) BS03 ZDA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302671 4wp9:A (1.382) BS01 MG 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302672 4wp9:A (1.382) BS02 MG 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302673 4wp9:A (1.382) BS03 ZDA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302674 4wp9:A (1.382) BS04 CA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302675 4wp9:A (1.382) BS05 CA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302676 4wp9:A (1.382) BS06 ZDA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302677 4wp9:B (1.382) BS01 ZDA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302678 4wp9:B (1.382) BS02 ZDA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302679 4wp9:B (1.382) BS03 CA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302680 4wpa:A (1.7) BS01 CA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302681 4wpa:A (1.7) BS02 PPV 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302682 4wpa:B (1.7) BS01 CA 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302683 4wpa:B (1.7) BS02 PPV 4.6.1.1 GO:0009190 ... Q5UFR5 25916753
    302684 4wpc:A (3.34) BS01 IHP ? N/A P38339 25620000
    302685 4wpc:B (3.34) BS01 IHP ? N/A P38339 25620000
    302686 4wpd:A (2.001) BS01 3SQ 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 N/A
    302687 4wpd:A (2.001) BS02 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 N/A
    302688 4wpd:B (2.001) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 N/A
    302689 4wpd:B (2.001) BS02 3SQ 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 N/A
    302690 4wpf:A (2.202) BS01 peptide ? GO:0003677 ... P51449 25815138
    302691 4wpf:A (2.202) BS02 3SN ? GO:0003677 ... P51449 25815138 MOAD: ic50=0.25uM
    BindingDB: EC50=69nM, IC50=249nM
    302692 4wpf:D (2.202) BS01 peptide ? GO:0003677 ... P51449 25815138
    302693 4wpf:D (2.202) BS02 3SN ? GO:0003677 ... P51449 25815138 MOAD: ic50=0.25uM
    BindingDB: EC50=69nM, IC50=249nM
    302694 4wph:A (2.92) BS01 peptide 3.4.19.12 N/A Q93009 26046769
    302695 4wph:B (2.92) BS01 peptide 3.4.19.12 N/A Q93009 26046769
    302696 4wpi:A (3.4) BS01 peptide 3.4.19.12 N/A Q93009 26046769
    302697 4wpi:B (3.4) BS01 peptide 3.4.19.12 N/A Q93009 26046769
    302698 4wpl:A (1.15) BS01 URA 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    302699 4wpn:A (1.95) BS01 3ST 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36
    GO:0000166 ... P00352 25634381 MOAD: ic50=0.21uM
    BindingDB: IC50=210nM, Ki=96nM
    302700 4wpo:A0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    302701 4wpo:A0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    302702 4wpo:A1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    302703 4wpo:A1 (2.8) BS02 rna ? GO:0003735 ... P60494 25594181
    302704 4wpo:A2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    302705 4wpo:A2 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 25594181
    302706 4wpo:A3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    302707 4wpo:A3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    302708 4wpo:A3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    302709 4wpo:A4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    302710 4wpo:A4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    302711 4wpo:A5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    302712 4wpo:A5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    302713 4wpo:A6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    302714 4wpo:A6 (2.8) BS02 MG ? GO:0000049 ... P35871 25594181
    302715 4wpo:A6 (2.8) BS03 ZN ? GO:0000049 ... P35871 25594181
    302716 4wpo:A7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    302717 4wpo:A7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    302718 4wpo:A7 (2.8) BS03 MG ? GO:0003735 ... P80340 25594181
    302719 4wpo:A7 (2.8) BS04 MG ? GO:0003735 ... P80340 25594181
    302720 4wpo:A7 (2.8) BS05 MG ? GO:0003735 ... P80340 25594181
    302721 4wpo:A8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    302722 4wpo:A8 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 25594181
    302723 4wpo:A9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    302724 4wpo:A9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    302725 4wpo:AC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    302726 4wpo:AD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    302727 4wpo:AD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    302728 4wpo:AD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    302729 4wpo:AD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    302730 4wpo:AD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    302731 4wpo:AD (2.8) BS06 MG ? GO:0002181 ... P60405 25594181
    302732 4wpo:AD (2.8) BS07 MG ? GO:0002181 ... P60405 25594181
    302733 4wpo:AD (2.8) BS08 MG ? GO:0002181 ... P60405 25594181
    302734 4wpo:AD (2.8) BS09 MG ? GO:0002181 ... P60405 25594181
    302735 4wpo:AD (2.8) BS10 MG ? GO:0002181 ... P60405 25594181
    302736 4wpo:AD (2.8) BS11 MG ? GO:0002181 ... P60405 25594181
    302737 4wpo:AE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    302738 4wpo:AE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    302739 4wpo:AF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    302740 4wpo:AF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    302741 4wpo:AF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    302742 4wpo:AF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    302743 4wpo:AF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25594181
    302744 4wpo:AF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25594181
    302745 4wpo:AF (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 25594181
    302746 4wpo:AF (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 25594181
    302747 4wpo:AG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    302748 4wpo:AG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    302749 4wpo:AG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25594181
    302750 4wpo:AG (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 25594181
    302751 4wpo:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    302752 4wpo:AH (2.8) BS02 MG N/A GO:0003735 ... N/A 25594181
    302753 4wpo:AK (2.8) BS01 rna ? GO:0005840 ... Q8VVE3 25594181
    302754 4wpo:AL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    302755 4wpo:AN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    302756 4wpo:AN (2.8) BS02 MG ? GO:0003729 ... P60488 25594181
    302757 4wpo:AO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    302758 4wpo:AO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    302759 4wpo:AP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    302760 4wpo:AP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25594181
    302761 4wpo:AP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25594181
    302762 4wpo:AP (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 25594181
    302763 4wpo:AQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    302764 4wpo:AQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    302765 4wpo:AQ (2.8) BS03 rna ? GO:0000049 ... P60489 25594181
    302766 4wpo:AQ (2.8) BS04 MG ? GO:0000049 ... P60489 25594181
    302767 4wpo:AR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    302768 4wpo:AR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25594181
    302769 4wpo:AR (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 25594181
    302770 4wpo:AR (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 25594181
    302771 4wpo:AS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    302772 4wpo:AS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    302773 4wpo:AT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    302774 4wpo:AT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    302775 4wpo:AU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    302776 4wpo:AU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    302777 4wpo:AU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    302778 4wpo:AU (2.8) BS04 MG ? GO:0000027 ... P60491 25594181
    302779 4wpo:AU (2.8) BS05 MG ? GO:0000027 ... P60491 25594181
    302780 4wpo:AU (2.8) BS06 MG ? GO:0000027 ... P60491 25594181
    302781 4wpo:AV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    302782 4wpo:AV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    302783 4wpo:AV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    302784 4wpo:AV (2.8) BS04 MG ? GO:0003723 ... P60492 25594181
    302785 4wpo:AV (2.8) BS05 MG ? GO:0003723 ... P60492 25594181
    302786 4wpo:AW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    302787 4wpo:AW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    302788 4wpo:AX (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 25594181
    302789 4wpo:AY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    302790 4wpo:AY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    302791 4wpo:AZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    302792 4wpo:AZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    302793 4wpo:BB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    302794 4wpo:BC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    302795 4wpo:BD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    302796 4wpo:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    302797 4wpo:BE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    302798 4wpo:BE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    302799 4wpo:BF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    302800 4wpo:BG (2.8) BS01 rna ? GO:0000049 ... P17291 25594181

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).