SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    303401 4wqr:3E (3.15) BS01 rna ? GO:0003735 ... P80373 26037619
    303402 4wqr:3E (3.15) BS02 MG ? GO:0003735 ... P80373 26037619
    303403 4wqr:3I (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    303404 4wqr:41 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    303405 4wqr:41 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    303406 4wqr:41 (3.15) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    303407 4wqr:41 (3.15) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    303408 4wqr:41 (3.15) BS05 MG ? GO:0000049 ... Q5SHQ0 26037619
    303409 4wqr:42 (3.15) BS01 rna ? GO:0005840 ... Q5SHQ5 26037619
    303410 4wqr:45 (3.15) BS01 rna ? GO:0000049 ... P60489 26037619
    303411 4wqr:45 (3.15) BS02 rna ? GO:0000049 ... P60489 26037619
    303412 4wqr:45 (3.15) BS03 rna ? GO:0000049 ... P60489 26037619
    303413 4wqr:45 (3.15) BS04 rna ? GO:0000049 ... P60489 26037619
    303414 4wqr:49 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    303415 4wqr:49 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    303416 4wqr:49 (3.15) BS03 MG ? GO:0000049 ... Q5SHQ0 26037619
    303417 4wqr:4A (3.15) BS01 rna ? GO:0000049 ... P80377 26037619
    303418 4wqr:4E (3.15) BS01 rna ? GO:0005840 ... Q5SHQ5 26037619
    303419 4wqr:4E (3.15) BS02 rna ? GO:0005840 ... Q5SHQ5 26037619
    303420 4wqr:4I (3.15) BS01 rna ? GO:0000049 ... P80377 26037619
    303421 4wqr:4I (3.15) BS02 rna ? GO:0000049 ... P80377 26037619
    303422 4wqr:4I (3.15) BS03 rna ? GO:0000049 ... P80377 26037619
    303423 4wqr:51 (3.15) BS01 rna N/A N/A N/A 26037619
    303424 4wqr:52 (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    303425 4wqr:55 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    303426 4wqr:58 (3.15) BS01 rna ? GO:0003729 ... P60488 26037619
    303427 4wqr:59 (3.15) BS01 rna N/A N/A N/A 26037619
    303428 4wqr:5A (3.15) BS01 rna N/A N/A N/A 26037619
    303429 4wqr:5A (3.15) BS02 ZN N/A N/A N/A 26037619
    303430 4wqr:5E (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    303431 4wqr:5E (3.15) BS02 MG ? GO:0003735 ... Q5SLP8 26037619
    303432 4wqr:5I (3.15) BS01 rna N/A N/A N/A 26037619
    303433 4wqr:5I (3.15) BS02 ZN N/A N/A N/A 26037619
    303434 4wqr:61 (3.15) BS01 rna ? GO:0005840 ... Q5SLQ1 26037619
    303435 4wqr:62 (3.15) BS01 rna ? GO:0000049 ... P17291 26037619
    303436 4wqr:62 (3.15) BS02 rna ? GO:0000049 ... P17291 26037619
    303437 4wqr:65 (3.15) BS01 rna ? GO:0005737 ... Q5SHQ4 26037619
    303438 4wqr:65 (3.15) BS02 rna ? GO:0005737 ... Q5SHQ4 26037619
    303439 4wqr:68 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    303440 4wqr:68 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    303441 4wqr:69 (3.15) BS01 rna ? GO:0005840 ... Q5SLQ1 26037619
    303442 4wqr:69 (3.15) BS02 rna ? GO:0005840 ... Q5SLQ1 26037619
    303443 4wqr:6A (3.15) BS01 rna ? GO:0005737 ... Q5SJ76 26037619
    303444 4wqr:6A (3.15) BS02 rna ? GO:0005737 ... Q5SJ76 26037619
    303445 4wqr:6E (3.15) BS01 rna ? GO:0000049 ... P17291 26037619
    303446 4wqr:6E (3.15) BS02 rna ? GO:0000049 ... P17291 26037619
    303447 4wqr:6I (3.15) BS01 rna ? GO:0005737 ... Q5SJ76 26037619
    303448 4wqr:6I (3.15) BS02 rna ? GO:0005737 ... Q5SJ76 26037619
    303449 4wqr:72 (3.15) BS01 rna N/A N/A N/A 26037619
    303450 4wqr:75 (3.15) BS01 rna ? GO:0003735 ... P60490 26037619
    303451 4wqr:75 (3.15) BS02 rna ? GO:0003735 ... P60490 26037619
    303452 4wqr:78 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    303453 4wqr:7A (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    303454 4wqr:7E (3.15) BS01 rna N/A N/A N/A 26037619
    303455 4wqr:7I (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    303456 4wqr:82 (3.15) BS01 rna ? GO:0000049 ... P80374 26037619
    303457 4wqr:82 (3.15) BS02 rna ? GO:0000049 ... P80374 26037619
    303458 4wqr:85 (3.15) BS01 rna ? GO:0000027 ... P60491 26037619
    303459 4wqr:88 (3.15) BS01 rna ? GO:0000049 ... P60489 26037619
    303460 4wqr:88 (3.15) BS02 rna ? GO:0000049 ... P60489 26037619
    303461 4wqr:88 (3.15) BS03 rna ? GO:0000049 ... P60489 26037619
    303462 4wqr:8A (3.15) BS01 rna N/A N/A N/A 26037619
    303463 4wqr:8E (3.15) BS01 rna ? GO:0000049 ... P80374 26037619
    303464 4wqr:8E (3.15) BS02 rna ? GO:0000049 ... P80374 26037619
    303465 4wqr:8I (3.15) BS01 rna N/A N/A N/A 26037619
    303466 4wqr:95 (3.15) BS01 rna ? GO:0003735 ... P60492 26037619
    303467 4wqr:98 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    303468 4wqr:9A (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    303469 4wqr:9I (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    303470 4wqr:A5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    303471 4wqr:A8 (3.15) BS01 rna ? GO:0005737 ... Q5SHQ4 26037619
    303472 4wqr:A8 (3.15) BS02 rna ? GO:0005737 ... Q5SHQ4 26037619
    303473 4wqr:AA (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    303474 4wqr:AI (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    303475 4wqr:B5 (3.15) BS01 rna ? GO:0005840 ... Q5SHP0 26037619
    303476 4wqr:B8 (3.15) BS01 rna ? GO:0003735 ... P60490 26037619
    303477 4wqr:B8 (3.15) BS02 rna ? GO:0003735 ... P60490 26037619
    303478 4wqr:BA (3.15) BS01 rna ? GO:0005840 ... P80380 26037619
    303479 4wqr:BI (3.15) BS01 rna ? GO:0005840 ... P80380 26037619
    303480 4wqr:C5 (3.15) BS01 rna ? GO:0005840 ... Q5SHP9 26037619
    303481 4wqr:C5 (3.15) BS02 ZN ? GO:0005840 ... Q5SHP9 26037619
    303482 4wqr:C8 (3.15) BS01 rna ? GO:0000027 ... P60491 26037619
    303483 4wqr:D5 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    303484 4wqr:D5 (3.15) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    303485 4wqr:D8 (3.15) BS01 rna ? GO:0003735 ... P60492 26037619
    303486 4wqr:E5 (3.15) BS01 rna ? GO:0003735 ... P60493 26037619
    303487 4wqr:E5 (3.15) BS02 rna ? GO:0003735 ... P60493 26037619
    303488 4wqr:E8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    303489 4wqr:E8 (3.15) BS02 MG ? GO:0003735 ... Q5SHP3 26037619
    303490 4wqr:F5 (3.15) BS01 rna ? GO:0005840 ... P60494 26037619
    303491 4wqr:F8 (3.15) BS01 rna ? GO:0005840 ... Q5SHP0 26037619
    303492 4wqr:G5 (3.15) BS01 rna ? GO:0005840 ... Q5SHP6 26037619
    303493 4wqr:G8 (3.15) BS01 rna ? GO:0005840 ... Q5SHP9 26037619
    303494 4wqr:H5 (3.15) BS01 rna ? GO:0005840 ... Q5SHQ6 26037619
    303495 4wqr:H5 (3.15) BS02 rna ? GO:0005840 ... Q5SHQ6 26037619
    303496 4wqr:H8 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    303497 4wqr:H8 (3.15) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    303498 4wqr:I5 (3.15) BS01 rna ? GO:0005840 ... Q5SJE1 26037619
    303499 4wqr:I8 (3.15) BS01 rna ? GO:0003735 ... P60493 26037619
    303500 4wqr:I8 (3.15) BS02 rna ? GO:0003735 ... P60493 26037619
    303501 4wqr:I8 (3.15) BS03 rna ? GO:0003735 ... P60493 26037619
    303502 4wqr:J5 (3.15) BS01 rna ? GO:0005840 ... P80339 26037619
    303503 4wqr:J8 (3.15) BS01 rna ? GO:0005840 ... P60494 26037619
    303504 4wqr:J8 (3.15) BS02 rna ? GO:0005840 ... P60494 26037619
    303505 4wqr:K5 (3.15) BS01 rna ? GO:0000049 ... P35871 26037619
    303506 4wqr:K8 (3.15) BS01 rna ? GO:0005840 ... Q5SHP6 26037619
    303507 4wqr:L5 (3.15) BS01 rna ? GO:0005840 ... P80340 26037619
    303508 4wqr:L8 (3.15) BS01 rna ? GO:0005840 ... Q5SHQ6 26037619
    303509 4wqr:L8 (3.15) BS02 rna ? GO:0005840 ... Q5SHQ6 26037619
    303510 4wqr:M5 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    303511 4wqr:M8 (3.15) BS01 rna ? GO:0005840 ... Q5SJE1 26037619
    303512 4wqr:N8 (3.15) BS01 rna ? GO:0005840 ... P80339 26037619
    303513 4wqr:O8 (3.15) BS01 rna ? GO:0000049 ... P35871 26037619
    303514 4wqr:P8 (3.15) BS01 rna ? GO:0005840 ... P80340 26037619
    303515 4wqr:Q8 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    303516 4wqs:C (4.306) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    303517 4wqs:C (4.306) BS02 rna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    303518 4wqs:C (4.306) BS03 dna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    303519 4wqs:D (4.306) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303520 4wqs:D (4.306) BS02 rna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303521 4wqs:D (4.306) BS03 dna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303522 4wqs:D (4.306) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303523 4wqs:D (4.306) BS05 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303524 4wqs:M (4.306) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    303525 4wqs:M (4.306) BS02 rna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    303526 4wqs:M (4.306) BS03 dna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    303527 4wqs:N (4.306) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303528 4wqs:N (4.306) BS02 rna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303529 4wqs:N (4.306) BS03 dna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303530 4wqs:N (4.306) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303531 4wqt:D (4.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303532 4wqt:D (4.4) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303533 4wqt:I (4.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303534 4wqt:I (4.4) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303535 4wqt:N (4.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303536 4wqt:N (4.4) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    303537 4wqu:A0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    303538 4wqu:A0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    303539 4wqu:A0 (2.8) BS03 MG ? GO:0003735 ... P60493 25594181
    303540 4wqu:A1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    303541 4wqu:A2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    303542 4wqu:A3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    303543 4wqu:A3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    303544 4wqu:A3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    303545 4wqu:A4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    303546 4wqu:A4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    303547 4wqu:A5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    303548 4wqu:A5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    303549 4wqu:A6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    303550 4wqu:A6 (2.8) BS02 MG ? GO:0000049 ... P35871 25594181
    303551 4wqu:A6 (2.8) BS03 ZN ? GO:0000049 ... P35871 25594181
    303552 4wqu:A7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    303553 4wqu:A7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    303554 4wqu:A7 (2.8) BS03 MG ? GO:0003735 ... P80340 25594181
    303555 4wqu:A7 (2.8) BS04 MG ? GO:0003735 ... P80340 25594181
    303556 4wqu:A8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    303557 4wqu:A8 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 25594181
    303558 4wqu:A9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    303559 4wqu:A9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    303560 4wqu:AC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    303561 4wqu:AD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    303562 4wqu:AD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    303563 4wqu:AD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    303564 4wqu:AD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    303565 4wqu:AD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    303566 4wqu:AD (2.8) BS06 MG ? GO:0002181 ... P60405 25594181
    303567 4wqu:AD (2.8) BS07 MG ? GO:0002181 ... P60405 25594181
    303568 4wqu:AD (2.8) BS08 MG ? GO:0002181 ... P60405 25594181
    303569 4wqu:AD (2.8) BS09 MG ? GO:0002181 ... P60405 25594181
    303570 4wqu:AD (2.8) BS10 MG ? GO:0002181 ... P60405 25594181
    303571 4wqu:AD (2.8) BS11 MG ? GO:0002181 ... P60405 25594181
    303572 4wqu:AE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    303573 4wqu:AF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    303574 4wqu:AF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    303575 4wqu:AF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    303576 4wqu:AF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    303577 4wqu:AF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25594181
    303578 4wqu:AF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25594181
    303579 4wqu:AF (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 25594181
    303580 4wqu:AF (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 25594181
    303581 4wqu:AG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    303582 4wqu:AG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    303583 4wqu:AG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 25594181
    303584 4wqu:AG (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 25594181
    303585 4wqu:AG (2.8) BS05 MG ? GO:0000049 ... Q5SHQ0 25594181
    303586 4wqu:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    303587 4wqu:AH (2.8) BS02 MG N/A GO:0003735 ... N/A 25594181
    303588 4wqu:AK (2.8) BS01 rna ? GO:0005840 ... Q8VVE3 25594181
    303589 4wqu:AL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    303590 4wqu:AN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    303591 4wqu:AN (2.8) BS02 MG ? GO:0003729 ... P60488 25594181
    303592 4wqu:AO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    303593 4wqu:AO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    303594 4wqu:AP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    303595 4wqu:AP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25594181
    303596 4wqu:AP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25594181
    303597 4wqu:AP (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 25594181
    303598 4wqu:AQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    303599 4wqu:AQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    303600 4wqu:AQ (2.8) BS03 MG ? GO:0000049 ... P60489 25594181

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).