SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    303601 4wqu:AR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    303602 4wqu:AR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25594181
    303603 4wqu:AS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    303604 4wqu:AS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    303605 4wqu:AT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    303606 4wqu:AT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    303607 4wqu:AU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    303608 4wqu:AU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    303609 4wqu:AU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    303610 4wqu:AU (2.8) BS04 MG ? GO:0000027 ... P60491 25594181
    303611 4wqu:AU (2.8) BS05 MG ? GO:0000027 ... P60491 25594181
    303612 4wqu:AU (2.8) BS06 MG ? GO:0000027 ... P60491 25594181
    303613 4wqu:AV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    303614 4wqu:AV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    303615 4wqu:AV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    303616 4wqu:AV (2.8) BS04 MG ? GO:0003723 ... P60492 25594181
    303617 4wqu:AV (2.8) BS05 MG ? GO:0003723 ... P60492 25594181
    303618 4wqu:AV (2.8) BS06 MG ? GO:0003723 ... P60492 25594181
    303619 4wqu:AV (2.8) BS07 MG ? GO:0003723 ... P60492 25594181
    303620 4wqu:AW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    303621 4wqu:AW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    303622 4wqu:AX (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 25594181
    303623 4wqu:AX (2.8) BS02 MG ? GO:0003735 ... Q5SHP0 25594181
    303624 4wqu:AY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    303625 4wqu:AY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    303626 4wqu:AZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    303627 4wqu:AZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    303628 4wqu:BB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    303629 4wqu:BB (2.8) BS02 MG ? GO:0003735 ... P80371 25594181
    303630 4wqu:BC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    303631 4wqu:BD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    303632 4wqu:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    303633 4wqu:BE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    303634 4wqu:BE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    303635 4wqu:BF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    303636 4wqu:BG (2.8) BS01 rna ? GO:0000049 ... P17291 25594181
    303637 4wqu:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    303638 4wqu:BI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    303639 4wqu:BI (2.8) BS02 rna ? GO:0000049 ... P80374 25594181
    303640 4wqu:BJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    303641 4wqu:BK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    303642 4wqu:BK (2.8) BS02 MG ? GO:0003735 ... P80376 25594181
    303643 4wqu:BL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    303644 4wqu:BL (2.8) BS02 peptide ? GO:0000049 ... Q5SHN3 25594181
    303645 4wqu:BL (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 25594181
    303646 4wqu:BM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    303647 4wqu:BM (2.8) BS02 rna ? GO:0000049 ... P80377 25594181
    303648 4wqu:BM (2.8) BS03 MG ? GO:0000049 ... P80377 25594181
    303649 4wqu:BN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    303650 4wqu:BN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    303651 4wqu:BN (2.8) BS03 MG N/A GO:0003735 ... N/A 25594181
    303652 4wqu:BO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    303653 4wqu:BO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    303654 4wqu:BP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    303655 4wqu:BQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    303656 4wqu:BR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    303657 4wqu:BS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    303658 4wqu:BT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    303659 4wqu:BT (2.8) BS02 MG ? GO:0003723 ... P80380 25594181
    303660 4wqu:BZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    303661 4wqu:BZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    303662 4wqu:BZ (2.8) BS03 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    303663 4wqu:C0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    303664 4wqu:C1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    303665 4wqu:C2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    303666 4wqu:C3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    303667 4wqu:C3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    303668 4wqu:C3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    303669 4wqu:C4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    303670 4wqu:C4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    303671 4wqu:C5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    303672 4wqu:C5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    303673 4wqu:C6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    303674 4wqu:C6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25594181
    303675 4wqu:C7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    303676 4wqu:C8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    303677 4wqu:C9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    303678 4wqu:C9 (2.8) BS02 MG ? GO:0003735 ... Q5SHR2 25594181
    303679 4wqu:C9 (2.8) BS03 ZN ? GO:0003735 ... Q5SHR2 25594181
    303680 4wqu:CC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    303681 4wqu:CD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    303682 4wqu:CD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    303683 4wqu:CD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    303684 4wqu:CD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    303685 4wqu:CD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    303686 4wqu:CE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    303687 4wqu:CE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    303688 4wqu:CE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25594181
    303689 4wqu:CF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    303690 4wqu:CF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    303691 4wqu:CF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    303692 4wqu:CF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    303693 4wqu:CG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    303694 4wqu:CG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    303695 4wqu:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    303696 4wqu:CK (2.8) BS01 rna ? GO:0005840 ... Q8VVE3 25594181
    303697 4wqu:CL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    303698 4wqu:CN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    303699 4wqu:CO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    303700 4wqu:CO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    303701 4wqu:CP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    303702 4wqu:CQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    303703 4wqu:CQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    303704 4wqu:CQ (2.8) BS03 MG ? GO:0000049 ... P60489 25594181
    303705 4wqu:CR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    303706 4wqu:CS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    303707 4wqu:CS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    303708 4wqu:CT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    303709 4wqu:CT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    303710 4wqu:CU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    303711 4wqu:CU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    303712 4wqu:CU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    303713 4wqu:CV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    303714 4wqu:CV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    303715 4wqu:CV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    303716 4wqu:CW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    303717 4wqu:CW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    303718 4wqu:CX (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 25594181
    303719 4wqu:CY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    303720 4wqu:CY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    303721 4wqu:CZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    303722 4wqu:CZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    303723 4wqu:DB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    303724 4wqu:DC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    303725 4wqu:DD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    303726 4wqu:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    303727 4wqu:DE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    303728 4wqu:DE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    303729 4wqu:DF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    303730 4wqu:DF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25594181
    303731 4wqu:DG (2.8) BS01 rna ? GO:0000049 ... P17291 25594181
    303732 4wqu:DH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    303733 4wqu:DI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    303734 4wqu:DJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    303735 4wqu:DJ (2.8) BS02 MG ? GO:0000049 ... Q5SHN7 25594181
    303736 4wqu:DK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    303737 4wqu:DL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    303738 4wqu:DL (2.8) BS02 peptide ? GO:0000049 ... Q5SHN3 25594181
    303739 4wqu:DL (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 25594181
    303740 4wqu:DM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    303741 4wqu:DN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    303742 4wqu:DN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    303743 4wqu:DO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    303744 4wqu:DO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    303745 4wqu:DP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    303746 4wqu:DQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    303747 4wqu:DR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    303748 4wqu:DS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    303749 4wqu:DT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    303750 4wqu:DZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    303751 4wqu:DZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    303752 4wqu:DZ (2.8) BS03 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1
    25594181
    303753 4wqy:A0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    303754 4wqy:A0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    303755 4wqy:A0 (2.8) BS03 MG ? GO:0003735 ... P60493 25594181
    303756 4wqy:A1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    303757 4wqy:A2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    303758 4wqy:A3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    303759 4wqy:A3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    303760 4wqy:A4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    303761 4wqy:A4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    303762 4wqy:A4 (2.8) BS03 MG ? GO:0003735 ... Q5SJE1 25594181
    303763 4wqy:A5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    303764 4wqy:A5 (2.8) BS02 MG ? GO:0003735 ... P80339 25594181
    303765 4wqy:A5 (2.8) BS03 ZN ? GO:0003735 ... P80339 25594181
    303766 4wqy:A6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    303767 4wqy:A6 (2.8) BS02 MG ? GO:0000049 ... P35871 25594181
    303768 4wqy:A6 (2.8) BS03 MG ? GO:0000049 ... P35871 25594181
    303769 4wqy:A6 (2.8) BS04 ZN ? GO:0000049 ... P35871 25594181
    303770 4wqy:A7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    303771 4wqy:A7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    303772 4wqy:A7 (2.8) BS03 MG ? GO:0003735 ... P80340 25594181
    303773 4wqy:A7 (2.8) BS04 MG ? GO:0003735 ... P80340 25594181
    303774 4wqy:A7 (2.8) BS05 MG ? GO:0003735 ... P80340 25594181
    303775 4wqy:A8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    303776 4wqy:A9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    303777 4wqy:A9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    303778 4wqy:AC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    303779 4wqy:AD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    303780 4wqy:AD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    303781 4wqy:AD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    303782 4wqy:AD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    303783 4wqy:AD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    303784 4wqy:AD (2.8) BS06 MG ? GO:0002181 ... P60405 25594181
    303785 4wqy:AD (2.8) BS07 MG ? GO:0002181 ... P60405 25594181
    303786 4wqy:AD (2.8) BS08 MG ? GO:0002181 ... P60405 25594181
    303787 4wqy:AD (2.8) BS09 MG ? GO:0002181 ... P60405 25594181
    303788 4wqy:AD (2.8) BS10 MG ? GO:0002181 ... P60405 25594181
    303789 4wqy:AD (2.8) BS11 MG ? GO:0002181 ... P60405 25594181
    303790 4wqy:AE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    303791 4wqy:AE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    303792 4wqy:AF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    303793 4wqy:AF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    303794 4wqy:AF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    303795 4wqy:AF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    303796 4wqy:AF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25594181
    303797 4wqy:AF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25594181
    303798 4wqy:AF (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 25594181
    303799 4wqy:AF (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 25594181
    303800 4wqy:AG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).